Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003651

Physical Location & Seq

Genomic Coordinates Reverse (-)

1271534 .. 1273592

Gene Structure 2059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCAAGAGTCAGGCCCCGGTTTCGTAGGAACTATCTGGTTGGGGAAACTCTTTCAGGATGTTGGGCAACTGTTGGAGTGTTGACTGAGAAGGGGATTAAAAGAATTAGTTCTACGGGGAAGAGCTATGCGATATACAAATTTGGGTGTTTGGATGAAGATACTGTTTCTGTTTTCTTGTTTGGTGATGCTTATGAGAGGAACTGCAATGAGCCAGCTGGAATGGTGTTTGCGCTGTTTGATTGTAGCGTACGCAAGGATGCTAAGGGTGCTGGTTTTTCTTTGAGTGTGTTTTCAGCCAATCATATTGTGAAGATCGGAACTTCTGTTGATTATGGAGTTTGCAGAGGGAAAAGGAAGGGATTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-primase

Protein Analysis

124

Amino Acids

13.58

Weight (kDa)

9.6

Isoelectric Point (pI)

25.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_MCM10	PF22379	10 - 104	8.4e-35	MCM10 OB-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20980
fragaria_vesca	FvH4_1g02330 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g01260 FvH4_2g23470 FvH4_3g06660 FvH4_5g37420
malus_domestica	MD10G1095100.v1.1
prunus_persica	Prupe.8G164900_v2.0.a1 Prupe.8G164900_v2.0.a1 Prupe.8G164900_v2.0.a1
pyrus_communis	pycom10g10650
rosa_chinensis	RchiOBHm_Chr5g0048301 RchiOBHm_Chr6g0251921
rosa_laevigata	RLG00000015419
rosa_multiflora	Rmu_co8059040.1_g000001 Rmu_ssc0000303.1_g000014
rosa_roxburghii	Rroxscaffold_7G00216300
rosa_rugosa	Rorug04G0092900 Rorug04G0092900 Rorug05G0504900 Rorug05G0505000 Rorug05G0505000 Rorug05G0505000 Rorug05G0505000 Rorug05G0505100
rosa_samantha	Rh6AG016300 Rh6BG014300 Rh6CG011100 Rh6DG012400
rosa_wichuraiana	Rw6G001560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	140
AfaI	GTAC	1 cut(s)	252
AluBI	AGCT	2 cut(s)	126, 218
AluI	AGCT	2 cut(s)	126, 218
AoxI	GGCC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	140
Asp700I	GAANNNNTTC	1 cut(s)	109
AspLEI	GCGC	1 cut(s)	235
AspS9I	GGNCC	1 cut(s)	15
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	197
BcnI	CCSGG	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	15
BmiI	GGNNCC	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	2 cut(s)	178, 250
Bpu10I	CCTNAGC	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	17
Bse3DI	GCAATG	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	3 cut(s)	65, 160, 265
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	19
BsiWI	CGTACG	1 cut(s)	250
BsnI	GGCC	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	315
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	17
BspQI	GCTCTTC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	73, 166
Bst6I	CTCTTC	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	2 cut(s)	87, 264
BstF5I	GGATG	3 cut(s)	65, 160, 265
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	1 cut(s)	318
BstMBI	GATC	1 cut(s)	315
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	16
BtsCI	GGATG	3 cut(s)	65, 160, 265
Cac8I	GCNNGC	1 cut(s)	216
CfoI	GCGC	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	15
Csp6I	GTAC	1 cut(s)	251
CviJI	RGCY	5 cut(s)	16, 126, 214, 218, 299
CviKI_1	RGCY	5 cut(s)	16, 126, 214, 218, 299
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	2 cut(s)	87, 264
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	15
FaiI	YATR	5 cut(s)	129, 136, 195, 306, 336
FokI	GGATG	3 cut(s)	72, 167, 272
GlaI	GCGC	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	16
HapII	CCGG	1 cut(s)	19
HhaI	GCGC	1 cut(s)	235
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HinfI	GANTC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	19
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	84
Hpy188I	TCNGA	1 cut(s)	320
Hpy188III	TCNNGA	1 cut(s)	57
Hpy8I	GTNNAC	1 cut(s)	84
HpyAV	CCTTC	2 cut(s)	85, 352
HpyCH4III	ACNGT	2 cut(s)	73, 166
HpyCH4V	TGCA	2 cut(s)	207, 345
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	2 cut(s)	87, 264
HspAI	GCGC	1 cut(s)	233
Kzo9I	GATC	1 cut(s)	315
LguI	GCTCTTC	1 cut(s)	116
LpnPI	CCDG	6 cut(s)	23, 32, 42, 204, 228, 258
LweI	GCATC	2 cut(s)	178, 250
MalI	GATC	1 cut(s)	317
MboI	GATC	1 cut(s)	315
MboII	GAAGA	3 cut(s)	133, 170, 325
MluCI	AATT	2 cut(s)	105, 140
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	2 cut(s)	192, 341
MroXI	GAANNNNTTC	1 cut(s)	109
MseI	TTAA	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	1 cut(s)	19
MspR9I	CCNGG	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	269
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	1 cut(s)	315
NlaIV	GGNNCC	1 cut(s)	17
PciSI	GCTCTTC	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	109
Pfl23II	CGTACG	1 cut(s)	250
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
PspLI	CGTACG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	15
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	99
Sau3AI	GATC	1 cut(s)	315
Sau96I	GGNCC	1 cut(s)	15
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	19
SetI	ASST	2 cut(s)	128, 220
SfaNI	GCATC	2 cut(s)	178, 250
Sse9I	AATT	2 cut(s)	105, 140
StyD4I	CCNGG	1 cut(s)	17
TaaI	ACNGT	2 cut(s)	73, 166
TasI	AATT	2 cut(s)	105, 140
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TspDTI	ATGAA	1 cut(s)	171
XapI	RAATTY	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.