AT2G21490

Belongs to the plant dehydrin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014045
Physical Location & Seq
Reverse (-)
9205990 .. 9207125
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G21490.1

Sequence Viewer

Length: 558 bp
ATGGCGGATTTGAGGGACGAAAAAGGTAATCCGATCCATCTAACTGACACACAGGGAAACCCAATTGTCGACCTGACTGATGAGCACGGTAACCCCATGTACCTAACCGGTGTTGTTAGCTCCACTCCTCAGCATAAGGAGAGTACTACCAGCGACATTGCAGAGCACCCTACTAGCACCGTTGGAGAAACACATCCGGCAGCTGCTCCAGCTGGTGCTGGTGCTGCCACCGCTGCCACTGCGACAGGAGTCTCTGCTGGTACTGGAGCAACCACCACAGGGCAGCAACACCATGGGTCGCTTGAAGAGCATCTTCGTCGGTCTGGAAGTTCATCTAGCTCTAGCTCGGAGGATGATGGGCAAGGAGGGAGGAGGAAGAAGAGCATAAAGGAGAAAATTAAAGAGAAGTTCGGTAGCGGCAAACACAAGGACGAACAAACACCAGCGACCGCCACAACAACAGGACCTGCCACTACCGACCAACCTCACGAGAAGAAGGGCATTCTCGAGAAGATCAAGGACAAGCTTCCAGGCCACCATAACCACAACCACCCATGA

Protein Analysis

185

Amino Acids

19.3

Weight (kDa)

6.38

Isoelectric Point (pI)

34.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dehydrin PF00257 23 - 180 1.1e-48 Dehydrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21490 AT4G39130
fragaria_vesca FvH4_2g09610
malus_domestica MD10G1069000.v1.1
prunus_persica Prupe.8G091000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0265971
rosa_laevigata RLG00000014143
rosa_multiflora Rmu_co8443205.1_g000001 Rmu_sc0013338.1_g000002
rosa_roxburghii Rroxscaffold_7G00202180
rosa_rugosa Rorug06G0021900
rosa_samantha Rh6AG143200 Rh6BG143500 Rh6CG140100 Rh6DG127800
rosa_wichuraiana Rw0G015570 Rw6G012380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 475
AccI GTMKAC 1 cut(s) 69
AciI CCGC 4 cut(s) 5, 231, 417, 450
AclWI GGATC 1 cut(s) 28
AfaI GTAC 3 cut(s) 101, 145, 262
AfiI CCNNNNNNNGG 1 cut(s) 279
AgeI ACCGGT 1 cut(s) 107
AgsI TTSAA 1 cut(s) 305
AjnI CCWGG 1 cut(s) 529
AluBI AGCT 6 cut(s) 120, 203, 212, 339, 345, 526
AluI AGCT 6 cut(s) 120, 203, 212, 339, 345, 526
Alw21I GWGCWC 2 cut(s) 87, 168
Alw26I GTCTC 1 cut(s) 256
AlwI GGATC 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 467
Ama87I CYCGRG 1 cut(s) 506
AoxI GGCC 1 cut(s) 532
ApeKI GCWGC 5 cut(s) 200, 203, 224, 233, 283
AsiGI ACCGGT 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 464
AvaI CYCGRG 1 cut(s) 506
AvaII GGWCC 1 cut(s) 464
BauI CACGAG 1 cut(s) 488
Bbv12I GWGCWC 2 cut(s) 87, 168
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 5 cut(s) 190, 211, 212, 220, 295
BccI CCATC 2 cut(s) 45, 350
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BciT130I CCWGG 1 cut(s) 531
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 3 cut(s) 174, 336, 342
BfuAI ACCTGC 1 cut(s) 475
BisI GCNGC 6 cut(s) 201, 204, 225, 234, 284, 418
BlsI GCNGC 6 cut(s) 202, 205, 226, 235, 285, 419
BmcAI AGTACT 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 531
Bme18I GGWCC 1 cut(s) 464
BmeT110I CYCGRG 1 cut(s) 506
BmgT120I GGNCC 1 cut(s) 464
BmrFI CCNGG 1 cut(s) 531
BmsI GCATC 1 cut(s) 319
BoxI GACNNNNGTC 1 cut(s) 248
BpmI CTGGAG 2 cut(s) 192, 285
Bpu10I CCTNAGC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 292
BsaWI WCCGGW 1 cut(s) 107
Bsc4I CCNNNNNNNGG 1 cut(s) 279
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 268
Bse3DI GCAATG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 531
BseDI CCNNGG 1 cut(s) 292
BseGI GGATG 2 cut(s) 193, 358
BseLI CCNNNNNNNGG 1 cut(s) 279
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 268
BseRI GAGGAG 2 cut(s) 117, 385
BseXI GCAGC 5 cut(s) 190, 211, 212, 220, 295
Bsh1285I CGRYCG 1 cut(s) 450
BshFI GGCC 1 cut(s) 534
BshTI ACCGGT 1 cut(s) 107
BsiEI CGRYCG 1 cut(s) 450
BsiHKAI GWGCWC 2 cut(s) 87, 168
BsiHKCI CYCGRG 1 cut(s) 506
BsiSI CCGG 2 cut(s) 108, 197
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 279
BsmAI GTCTC 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 29
BsmI GAATGC 1 cut(s) 501
BsnI GGCC 1 cut(s) 534
BsoBI CYCGRG 1 cut(s) 506
Bsp1286I GDGCHC 2 cut(s) 87, 168
Bsp143I GATC 2 cut(s) 33, 513
Bsp19I CCATGG 1 cut(s) 292
BspACI CCGC 4 cut(s) 5, 231, 417, 450
BspANI GGCC 1 cut(s) 534
BspCNI CTCAG 1 cut(s) 142
BspMI ACCTGC 1 cut(s) 475
BspPI GGATC 1 cut(s) 28
BspQI GCTCTTC 2 cut(s) 300, 374
BsrDI GCAATG 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 1 cut(s) 268
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 292
BssMI GATC 2 cut(s) 33, 513
BssSI CACGAG 1 cut(s) 488
BssT1I CCWWGG 1 cut(s) 292
Bst2BI CACGAG 1 cut(s) 488
Bst2UI CCWGG 1 cut(s) 531
Bst4CI ACNGT 2 cut(s) 89, 181
Bst6I CTCTTC 2 cut(s) 300, 374
BstDEI CTNAG 1 cut(s) 129
BstDSI CCRYGG 1 cut(s) 292
BstEII GGTNACC 1 cut(s) 89
BstF5I GGATG 2 cut(s) 193, 358
BstKTI GATC 2 cut(s) 36, 516
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 2 cut(s) 33, 513
BstMCI CGRYCG 1 cut(s) 450
BstMWI GCNNNNNNNGC 6 cut(s) 209, 224, 230, 233, 239, 307
BstNI CCWGG 1 cut(s) 531
BstPAI GACNNNNGTC 1 cut(s) 248
BstPI GGTNACC 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 529
BstV1I GCAGC 5 cut(s) 190, 211, 212, 220, 295
BsuRI GGCC 1 cut(s) 534
BtgI CCRYGG 1 cut(s) 292
BtsCI GGATG 2 cut(s) 193, 358
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 237
BveI ACCTGC 1 cut(s) 475
CaiI CAGNNNCTG 1 cut(s) 467
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 464
Csp6I GTAC 3 cut(s) 100, 144, 261
CspAI ACCGGT 1 cut(s) 107
CviAII CATG 3 cut(s) 97, 293, 555
CviJI RGCY 7 cut(s) 120, 203, 212, 339, 345, 526, 534
CviKI_1 RGCY 7 cut(s) 120, 203, 212, 339, 345, 526, 534
CviQI GTAC 3 cut(s) 100, 144, 261
DdeI CTNAG 1 cut(s) 129
DpnI GATC 2 cut(s) 35, 515
DpnII GATC 2 cut(s) 33, 513
Eam1104I CTCTTC 2 cut(s) 300, 374
EarI CTCTTC 2 cut(s) 300, 374
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 292
Eco47I GGWCC 1 cut(s) 464
Eco88I CYCGRG 1 cut(s) 506
Eco91I GGTNACC 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 464
EcoO65I GGTNACC 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 529
EcoT14I CCWWGG 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 292
FaeI CATG 3 cut(s) 100, 296, 558
FaiI YATR 6 cut(s) 98, 135, 294, 386, 540, 556
FalI AAGNNNNNCTT 2 cut(s) 297, 329
FaqI GGGAC 1 cut(s) 29
FatI CATG 3 cut(s) 96, 292, 554
FblI GTMKAC 1 cut(s) 69
Fnu4HI GCNGC 6 cut(s) 201, 204, 225, 234, 284, 418
FokI GGATG 2 cut(s) 180, 365
Fsp4HI GCNGC 6 cut(s) 201, 204, 225, 234, 284, 418
FspBI CTAG 3 cut(s) 174, 336, 342
GluI GCNGC 6 cut(s) 201, 204, 225, 234, 284, 418
GsuI CTGGAG 2 cut(s) 192, 285
HaeIII GGCC 1 cut(s) 534
HapII CCGG 2 cut(s) 108, 197
Hin1II CATG 3 cut(s) 100, 296, 558
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 1 cut(s) 249
HpaII CCGG 2 cut(s) 108, 197
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 2 cut(s) 33, 349
Hpy188III TCNNGA 4 cut(s) 324, 488, 506, 508
Hpy8I GTNNAC 1 cut(s) 70
Hpy99I CGWCG 1 cut(s) 321
HpyAV CCTTC 1 cut(s) 490
HpyCH4III ACNGT 2 cut(s) 89, 181
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 6 cut(s) 209, 224, 230, 233, 239, 307
HpyF3I CTNAG 1 cut(s) 129
Hsp92II CATG 3 cut(s) 100, 296, 558
Kzo9I GATC 2 cut(s) 33, 513
LguI GCTCTTC 2 cut(s) 300, 374
LmnI GCTCC 3 cut(s) 125, 211, 266
Lsp1109I GCAGC 5 cut(s) 190, 211, 212, 220, 295
LweI GCATC 1 cut(s) 319
MaeI CTAG 3 cut(s) 174, 336, 342
MaeIII GTNAC 1 cut(s) 89
MalI GATC 2 cut(s) 35, 515
MboI GATC 2 cut(s) 33, 513
MboII GAAGA 6 cut(s) 305, 317, 388, 391, 505, 523
MfeI CAATTG 1 cut(s) 63
MhlI GDGCHC 2 cut(s) 87, 168
MluCI AATT 2 cut(s) 63, 396
MlyI GAGTC 1 cut(s) 258
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 7 cut(s) 6, 138, 343, 359, 363, 366, 495
MseI TTAA 1 cut(s) 399
MspA1I CMGCKG 3 cut(s) 203, 212, 233
MspI CCGG 2 cut(s) 108, 197
MspR9I CCNGG 1 cut(s) 531
MunI CAATTG 1 cut(s) 63
Mva1269I GAATGC 1 cut(s) 501
MvaI CCWGG 1 cut(s) 531
MwoI GCNNNNNNNGC 6 cut(s) 209, 224, 230, 233, 239, 307
NcoI CCATGG 1 cut(s) 292
NdeII GATC 2 cut(s) 33, 513
NlaIII CATG 3 cut(s) 100, 296, 558
PaeR7I CTCGAG 1 cut(s) 506
PciSI GCTCTTC 2 cut(s) 300, 374
PctI GAATGC 1 cut(s) 501
PinAI ACCGGT 1 cut(s) 107
PkrI GCNGC 6 cut(s) 202, 205, 226, 235, 285, 419
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
PpuMI RGGWCCY 1 cut(s) 464
PshAI GACNNNNGTC 1 cut(s) 248
Psp5II RGGWCCY 1 cut(s) 464
Psp6I CCWGG 1 cut(s) 529
PspEI GGTNACC 1 cut(s) 89
PspGI CCWGG 1 cut(s) 529
PspPI GGNCC 1 cut(s) 464
PspPPI RGGWCCY 1 cut(s) 464
PstNI CAGNNNCTG 1 cut(s) 467
PvuII CAGCTG 2 cut(s) 203, 212
RsaI GTAC 3 cut(s) 101, 145, 262
RsaNI GTAC 3 cut(s) 100, 144, 261
SalI GTCGAC 1 cut(s) 68
SapI GCTCTTC 2 cut(s) 300, 374
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 6 cut(s) 201, 204, 225, 234, 284, 418
Sau3AI GATC 2 cut(s) 33, 513
Sau96I GGNCC 1 cut(s) 464
ScaI AGTACT 1 cut(s) 145
SchI GAGTC 1 cut(s) 258
ScrFI CCNGG 1 cut(s) 531
SduI GDGCHC 2 cut(s) 87, 168
SfaNI GCATC 1 cut(s) 319
Sfr274I CTCGAG 1 cut(s) 506
SinI GGWCC 1 cut(s) 464
SlaI CTCGAG 1 cut(s) 506
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 2 cut(s) 63, 396
SsiI CCGC 4 cut(s) 5, 231, 417, 450
SspMI CTAG 3 cut(s) 174, 336, 342
StyD4I CCNGG 1 cut(s) 529
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 2 cut(s) 89, 181
TaqI TCGA 2 cut(s) 69, 507
TaqII GACCGA 1 cut(s) 309
TasI AATT 2 cut(s) 63, 396
TatI WGTACW 1 cut(s) 143
TauI GCSGC 1 cut(s) 420
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 1 cut(s) 244
TseI GCWGC 5 cut(s) 200, 203, 224, 233, 283
TspDTI ATGAA 1 cut(s) 321
TspRI CASTG 1 cut(s) 244
VpaK11BI GGWCC 1 cut(s) 464
XhoI CTCGAG 1 cut(s) 506
XmiI GTMKAC 1 cut(s) 69
XspI CTAG 3 cut(s) 174, 336, 342
ZrmI AGTACT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.