Rh6BG143500

Belongs to the plant dehydrin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0014045
Physical Location & Seq
Forward (+)
22986107 .. 22987329
1223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG143500.1

Sequence Viewer

Length: 876 bp
ATGGAAGCCACACCCTTCTCTCCACCGTTATTTTTGCCCTTTAAAAAGAAGTTACAAGCCCCAAACCTCATCAAACTTGCTCATTTTCGATTTATCTCCCACATTTTCACACTTTCAAATCCAAAAATGGCTGAAATTCGCGACGAGTTCGGCAACCCCATCCCGCTCACCGACCAGTATGGCAACCCAGTTCAGCTGACAGACGAGCAAGGCCGCCCCATGCACCTCACTGGTATCGCCACCACCGAGGGCGGCCAAAGCCAAGCCATCCGTACTGGAGAGCAGCAGACCGGTATCGGAACCAGAGGCATCGGTACACACGTCCCTGGCACCGGTCTCCACGTTCCGGGCACGGGCACACACGTTCCGGGCACCGGTGCCCACATCCCCGGGACTGGCATACACATCCCCGGCACAGGTTCTCATGTTCCGGGGACAGGTGCACATGTTCCGGGCACCGGTGAGCACATGCCAGGAACCGGAGCCGGTAGCTACCCGTCAGGTACGGGGACGACCGGTGGTGTTGCTGAAGTGAAGGCTGATGAAGTTATCACCGAGCATGCCGTGCATGGTATTGGAAAACCCAAAACTGTAGGTGAACATTTACAACAGGAGCGCCACACCGGTGAGGCCGGTGAACACCGTCGCAGCTCGAGCTCTAGTTCTTCGGAGGAGGATGATGGGAAAGGAGGGAGGATCAGGAAGAAGAAGGGACTGAAGGAGAAGATAAAGGAAACCTTTAGCGGTAAACATAAGGATGAGCATCCGGAGGGGGGGCCGGCCTTCAAGACCCCCACGATGACTCCTCAGGAGCATGAGAAGAAAGGCATGATGGAGAAGATCAAGGAGAAGTTACCTGGTCACCATCCCCACTGA

Protein Analysis

291

Amino Acids

30.85

Weight (kDa)

8.65

Isoelectric Point (pI)

32.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dehydrin PF00257 64 - 289 1.8e-29 Dehydrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21490 AT4G39130
fragaria_vesca FvH4_2g09610
malus_domestica MD10G1069000.v1.1
prunus_persica Prupe.8G091000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0265971
rosa_laevigata RLG00000014143
rosa_multiflora Rmu_co8443205.1_g000001 Rmu_sc0013338.1_g000002
rosa_roxburghii Rroxscaffold_7G00202180
rosa_rugosa Rorug06G0021900
rosa_samantha Rh6AG143200 Rh6BG143500 Rh6CG140100 Rh6DG127800
rosa_wichuraiana Rw0G015570 Rw6G012380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 329, 371, 377, 455
AccBSI CCGCTC 1 cut(s) 166
AccII CGCG 1 cut(s) 141
AccIII TCCGGA 1 cut(s) 766
AciI CCGC 4 cut(s) 164, 214, 252, 744
AclWI GGATC 1 cut(s) 704
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 1 cut(s) 135
AcuI CTGAAG 2 cut(s) 549, 737
AfaI GTAC 3 cut(s) 274, 316, 505
AflIII ACRYGT 3 cut(s) 319, 361, 445
AgeI ACCGGT 6 cut(s) 290, 332, 374, 458, 515, 623
AgsI TTSAA 2 cut(s) 117, 787
AjiI CACGTC 1 cut(s) 322
AjnI CCWGG 3 cut(s) 325, 472, 856
AleI CACNNNNGTG 1 cut(s) 624
AluBI AGCT 4 cut(s) 196, 492, 651, 657
AluI AGCT 4 cut(s) 196, 492, 651, 657
Alw21I GWGCWC 3 cut(s) 445, 468, 659
Alw26I GTCTC 1 cut(s) 341
Alw44I GTGCAC 1 cut(s) 441
AlwI GGATC 1 cut(s) 704
Ama87I CYCGRG 2 cut(s) 389, 652
Aor13HI TCCGGA 1 cut(s) 766
AoxI GGCC 5 cut(s) 211, 253, 630, 776, 780
ApaLI GTGCAC 1 cut(s) 441
ApeKI GCWGC 2 cut(s) 283, 648
ApoI RAATTY 1 cut(s) 135
AsiGI ACCGGT 6 cut(s) 290, 332, 374, 458, 515, 623
AspLEI GCGC 1 cut(s) 618
AspS9I GGNCC 1 cut(s) 776
AsuC2I CCSGG 7 cut(s) 348, 369, 390, 391, 411, 432, 453
AsuHPI GGTGA 7 cut(s) 160, 473, 544, 608, 638, 647, 854
AvaI CYCGRG 2 cut(s) 389, 652
AxyI CCTNAGG 1 cut(s) 807
BaeGI GKGCMC 6 cut(s) 353, 359, 374, 382, 445, 458
BaeI ACNNNNGTAYC 2 cut(s) 306, 339
BanI GGYRCC 4 cut(s) 329, 371, 377, 455
BanII GRGCYC 1 cut(s) 659
Bbv12I GWGCWC 3 cut(s) 445, 468, 659
BbvI GCAGC 2 cut(s) 295, 660
BccI CCATC 5 cut(s) 167, 275, 674, 826, 873
BceAI ACGGC 1 cut(s) 548
BciT130I CCWGG 3 cut(s) 327, 474, 858
BcnI CCSGG 7 cut(s) 348, 369, 390, 391, 411, 432, 453
BcoDI GTCTC 1 cut(s) 341
BfaI CTAG 1 cut(s) 660
BfmI CTRYAG 1 cut(s) 591
BfoI RGCGCY 1 cut(s) 619
BisI GCNGC 4 cut(s) 214, 253, 284, 649
BlsI GCNGC 4 cut(s) 215, 254, 285, 650
BmeT110I CYCGRG 2 cut(s) 389, 652
BmgBI CACGTC 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 776
BmiI GGNNCC 8 cut(s) 301, 331, 373, 379, 457, 478, 484, 777
BmrI ACTGGG 1 cut(s) 182
BmsI GCATC 2 cut(s) 318, 772
BmuI ACTGGG 1 cut(s) 182
BpmI CTGGAG 1 cut(s) 297
BpuMI CCSGG 7 cut(s) 348, 369, 390, 391, 411, 432, 453
BsaBI GATNNNNATC 1 cut(s) 762
BsaI GGTCTC 1 cut(s) 341
BsaJI CCNNGG 6 cut(s) 246, 325, 388, 389, 409, 431
BsaWI WCCGGW 8 cut(s) 290, 332, 374, 458, 479, 515, 623, 766
BsaXI ACNNNNNCTCC 2 cut(s) 787, 817
Bse118I RCCGGY 9 cut(s) 290, 332, 374, 458, 485, 515, 623, 632, 778
Bse1I ACTGG 5 cut(s) 175, 188, 235, 280, 400
Bse21I CCTNAGG 1 cut(s) 807
Bse8I GATNNNNATC 1 cut(s) 762
BseAI TCCGGA 1 cut(s) 766
BseBI CCWGG 3 cut(s) 327, 474, 858
BseDI CCNNGG 6 cut(s) 246, 325, 388, 389, 409, 431
BseGI GGATG 8 cut(s) 159, 267, 384, 405, 682, 763, 763, 865
BseJI GATNNNNATC 1 cut(s) 762
BseMII CTCAG 1 cut(s) 821
BseNI ACTGG 5 cut(s) 175, 188, 235, 280, 400
BseRI GAGGAG 2 cut(s) 686, 795
BseSI GKGCMC 6 cut(s) 353, 359, 374, 382, 445, 458
BseXI GCAGC 2 cut(s) 295, 660
Bsh1236I CGCG 1 cut(s) 141
Bsh1285I CGRYCG 1 cut(s) 516
BshFI GGCC 5 cut(s) 213, 255, 632, 778, 782
BshNI GGYRCC 4 cut(s) 329, 371, 377, 455
BshTI ACCGGT 6 cut(s) 290, 332, 374, 458, 515, 623
BsiEI CGRYCG 1 cut(s) 516
BsiHKAI GWGCWC 3 cut(s) 445, 468, 659
BsiHKCI CYCGRG 2 cut(s) 389, 652
BslFI GGGAC 5 cut(s) 308, 406, 448, 523, 726
BsmAI GTCTC 1 cut(s) 341
BsmFI GGGAC 5 cut(s) 308, 406, 448, 523, 726
BsnI GGCC 5 cut(s) 213, 255, 632, 778, 782
Bso31I GGTCTC 1 cut(s) 341
BsoBI CYCGRG 2 cut(s) 389, 652
Bsp1286I GDGCHC 8 cut(s) 353, 359, 374, 382, 445, 458, 468, 659
Bsp13I TCCGGA 1 cut(s) 766
Bsp143I GATC 2 cut(s) 696, 840
Bsp68I TCGCGA 1 cut(s) 141
BspACI CCGC 4 cut(s) 164, 214, 252, 744
BspANI GGCC 5 cut(s) 213, 255, 632, 778, 782
BspCNI CTCAG 1 cut(s) 820
BspEI TCCGGA 1 cut(s) 766
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 8 cut(s) 301, 331, 373, 379, 457, 478, 484, 777
BspPI GGATC 1 cut(s) 704
BspT107I GGYRCC 4 cut(s) 329, 371, 377, 455
BspTNI GGTCTC 1 cut(s) 341
BsrBI CCGCTC 1 cut(s) 166
BsrFI RCCGGY 9 cut(s) 290, 332, 374, 458, 485, 515, 623, 632, 778
BsrI ACTGG 5 cut(s) 175, 188, 235, 280, 400
BssAI RCCGGY 9 cut(s) 290, 332, 374, 458, 485, 515, 623, 632, 778
BssECI CCNNGG 6 cut(s) 246, 325, 388, 389, 409, 431
BssMI GATC 2 cut(s) 696, 840
Bst2UI CCWGG 3 cut(s) 327, 474, 858
Bst4CI ACNGT 3 cut(s) 27, 592, 644
BstAPI GCANNNNNTGC 1 cut(s) 565
BstC8I GCNNGC 2 cut(s) 561, 780
BstDEI CTNAG 1 cut(s) 807
BstEII GGTNACC 1 cut(s) 860
BstF5I GGATG 8 cut(s) 159, 267, 384, 405, 682, 763, 763, 865
BstFNI CGCG 1 cut(s) 141
BstH2I RGCGCY 1 cut(s) 619
BstHHI GCGC 1 cut(s) 618
BstKTI GATC 2 cut(s) 699, 843
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 2 cut(s) 696, 840
BstMCI CGRYCG 1 cut(s) 516
BstMWI GCNNNNNNNGC 3 cut(s) 258, 565, 654
BstNI CCWGG 3 cut(s) 327, 474, 858
BstNSI RCATGY 3 cut(s) 449, 472, 563
BstPI GGTNACC 1 cut(s) 860
BstSFI CTRYAG 1 cut(s) 591
BstSLI GKGCMC 6 cut(s) 353, 359, 374, 382, 445, 458
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 2 cut(s) 295, 660
Bsu36I CCTNAGG 1 cut(s) 807
BsuRI GGCC 5 cut(s) 213, 255, 632, 778, 782
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 8 cut(s) 159, 267, 384, 405, 682, 763, 763, 865
BtsIMutI CAGTG 2 cut(s) 228, 871
BtuMI TCGCGA 1 cut(s) 141
Cac8I GCNNGC 2 cut(s) 561, 780
CfoI GCGC 1 cut(s) 618
Cfr10I RCCGGY 9 cut(s) 290, 332, 374, 458, 485, 515, 623, 632, 778
Cfr13I GGNCC 1 cut(s) 776
Cfr9I CCCGGG 1 cut(s) 389
CsiI ACCWGGT 1 cut(s) 856
Csp6I GTAC 3 cut(s) 273, 315, 504
CspAI ACCGGT 6 cut(s) 290, 332, 374, 458, 515, 623
CviAII CATG 8 cut(s) 220, 425, 446, 469, 560, 569, 815, 829
CviQI GTAC 3 cut(s) 273, 315, 504
DdeI CTNAG 1 cut(s) 807
DpnI GATC 2 cut(s) 698, 842
DpnII GATC 2 cut(s) 696, 840
DraI TTTAAA 1 cut(s) 43
EaeI YGGCCR 1 cut(s) 253
Ecl136II GAGCTC 1 cut(s) 657
Eco24I GRGCYC 1 cut(s) 659
Eco31I GGTCTC 1 cut(s) 341
Eco53kI GAGCTC 1 cut(s) 657
Eco57I CTGAAG 2 cut(s) 549, 737
Eco81I CCTNAGG 1 cut(s) 807
Eco88I CYCGRG 2 cut(s) 389, 652
Eco91I GGTNACC 1 cut(s) 860
EcoICRI GAGCTC 1 cut(s) 657
EcoO65I GGTNACC 1 cut(s) 860
EcoRII CCWGG 3 cut(s) 325, 472, 856
EcoT38I GRGCYC 1 cut(s) 659
FaeI CATG 8 cut(s) 223, 428, 449, 472, 563, 572, 818, 832
FalI AAGNNNNNCTT 2 cut(s) 722, 754
FaqI GGGAC 5 cut(s) 308, 406, 448, 523, 726
FatI CATG 8 cut(s) 219, 424, 445, 468, 559, 568, 814, 828
FauI CCCGC 1 cut(s) 171
Fnu4HI GCNGC 4 cut(s) 214, 253, 284, 649
FokI GGATG 8 cut(s) 146, 254, 371, 392, 689, 750, 770, 852
FriOI GRGCYC 1 cut(s) 659
FseI GGCCGGCC 1 cut(s) 782
Fsp4HI GCNGC 4 cut(s) 214, 253, 284, 649
FspBI CTAG 1 cut(s) 660
GlaI GCGC 1 cut(s) 617
GluI GCNGC 4 cut(s) 214, 253, 284, 649
GsuI CTGGAG 1 cut(s) 297
HaeII RGCGCY 1 cut(s) 619
HaeIII GGCC 5 cut(s) 213, 255, 632, 778, 782
HhaI GCGC 1 cut(s) 618
Hin1II CATG 8 cut(s) 223, 428, 449, 472, 563, 572, 818, 832
Hin6I GCGC 1 cut(s) 616
HinP1I GCGC 1 cut(s) 616
HinfI GANTC 1 cut(s) 802
HphI GGTGA 7 cut(s) 160, 473, 544, 608, 638, 647, 854
Hpy166II GTNNAC 5 cut(s) 317, 443, 599, 638, 749
Hpy188I TCNGA 2 cut(s) 299, 670
Hpy188III TCNNGA 5 cut(s) 140, 700, 767, 787, 809
Hpy8I GTNNAC 5 cut(s) 317, 443, 599, 638, 749
Hpy99I CGWCG 2 cut(s) 146, 648
HpyAV CCTTC 5 cut(s) 25, 529, 703, 712, 793
HpyCH4III ACNGT 3 cut(s) 27, 592, 644
HpyCH4IV ACGT 3 cut(s) 321, 342, 363
HpyCH4V TGCA 3 cut(s) 223, 443, 568
HpyF10VI GCNNNNNNNGC 3 cut(s) 258, 565, 654
HpyF3I CTNAG 1 cut(s) 807
HpySE526I ACGT 3 cut(s) 321, 342, 363
Hsp92II CATG 8 cut(s) 223, 428, 449, 472, 563, 572, 818, 832
HspAI GCGC 1 cut(s) 616
Kpn2I TCCGGA 1 cut(s) 766
KroI GCCGGC 1 cut(s) 778
KroNI GCCGGC 1 cut(s) 780
Kzo9I GATC 2 cut(s) 696, 840
LmnI GCTCC 3 cut(s) 482, 613, 811
Lsp1109I GCAGC 2 cut(s) 295, 660
LweI GCATC 2 cut(s) 318, 772
MabI ACCWGGT 1 cut(s) 856
MaeI CTAG 1 cut(s) 660
MaeII ACGT 3 cut(s) 321, 342, 363
MaeIII GTNAC 3 cut(s) 51, 852, 860
MalI GATC 2 cut(s) 698, 842
MbiI CCGCTC 1 cut(s) 166
MboI GATC 2 cut(s) 696, 840
MboII GAAGA 6 cut(s) 657, 715, 718, 736, 832, 850
MhlI GDGCHC 8 cut(s) 353, 359, 374, 382, 445, 458, 468, 659
MluCI AATT 1 cut(s) 135
MlyI GAGTC 1 cut(s) 796
MroI TCCGGA 1 cut(s) 766
MroNI GCCGGC 1 cut(s) 778
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 2 cut(s) 624, 756
MspA1I CMGCKG 1 cut(s) 196
MvaI CCWGG 3 cut(s) 327, 474, 858
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 3 cut(s) 258, 565, 654
NaeI GCCGGC 1 cut(s) 780
NciI CCSGG 7 cut(s) 348, 369, 390, 391, 411, 432, 453
NdeII GATC 2 cut(s) 696, 840
NgoMIV GCCGGC 1 cut(s) 778
NlaIII CATG 8 cut(s) 223, 428, 449, 472, 563, 572, 818, 832
NlaIV GGNNCC 8 cut(s) 301, 331, 373, 379, 457, 478, 484, 777
NmuCI GTSAC 1 cut(s) 860
NruI TCGCGA 1 cut(s) 141
NspI RCATGY 3 cut(s) 449, 472, 563
OliI CACNNNNGTG 1 cut(s) 624
PaeI GCATGC 1 cut(s) 563
PaeR7I CTCGAG 1 cut(s) 652
PciI ACATGT 1 cut(s) 445
PcsI WCGNNNNNNNCGW 2 cut(s) 243, 318
PdiI GCCGGC 1 cut(s) 780
PinAI ACCGGT 6 cut(s) 290, 332, 374, 458, 515, 623
PkrI GCNGC 4 cut(s) 215, 254, 285, 650
PleI GAGTC 1 cut(s) 796
PpsI GAGTC 1 cut(s) 796
PscI ACATGT 1 cut(s) 445
Psp124BI GAGCTC 1 cut(s) 659
Psp6I CCWGG 3 cut(s) 325, 472, 856
PspEI GGTNACC 1 cut(s) 860
PspGI CCWGG 3 cut(s) 325, 472, 856
PspN4I GGNNCC 8 cut(s) 301, 331, 373, 379, 457, 478, 484, 777
PspPI GGNCC 1 cut(s) 776
PspXI VCTCGAGB 1 cut(s) 652
PvuII CAGCTG 1 cut(s) 196
RigI GGCCGGCC 1 cut(s) 782
RruI TCGCGA 1 cut(s) 141
RsaI GTAC 3 cut(s) 274, 316, 505
RsaNI GTAC 3 cut(s) 273, 315, 504
RseI CAYNNNNRTG 2 cut(s) 624, 756
SacI GAGCTC 1 cut(s) 659
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 4 cut(s) 214, 253, 284, 649
Sau3AI GATC 2 cut(s) 696, 840
Sau96I GGNCC 1 cut(s) 776
SchI GAGTC 1 cut(s) 796
SduI GDGCHC 8 cut(s) 353, 359, 374, 382, 445, 458, 468, 659
SexAI ACCWGGT 1 cut(s) 856
SfaNI GCATC 2 cut(s) 318, 772
SfcI CTRYAG 1 cut(s) 591
Sfr274I CTCGAG 1 cut(s) 652
SgrAI CRCCGGYG 3 cut(s) 374, 458, 623
SlaI CTCGAG 1 cut(s) 652
SmaI CCCGGG 1 cut(s) 391
SmiMI CAYNNNNRTG 2 cut(s) 624, 756
SmlI CTYRAG 1 cut(s) 652
SmoI CTYRAG 1 cut(s) 652
SphI GCATGC 1 cut(s) 563
Sse9I AATT 1 cut(s) 135
SsiI CCGC 4 cut(s) 164, 214, 252, 744
SspMI CTAG 1 cut(s) 660
SstI GAGCTC 1 cut(s) 659
TaaI ACNGT 3 cut(s) 27, 592, 644
TaiI ACGT 3 cut(s) 324, 345, 366
TaqI TCGA 2 cut(s) 88, 653
TasI AATT 1 cut(s) 135
TauI GCSGC 2 cut(s) 216, 255
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 1 cut(s) 860
TseI GCWGC 2 cut(s) 283, 648
Tsp45I GTSAC 1 cut(s) 860
TspDTI ATGAA 1 cut(s) 558
TspGWI ACGGA 1 cut(s) 260
TspMI CCCGGG 1 cut(s) 389
TspRI CASTG 1 cut(s) 235
VneI GTGCAC 1 cut(s) 441
XapI RAATTY 1 cut(s) 135
XceI RCATGY 3 cut(s) 449, 472, 563
XhoI CTCGAG 1 cut(s) 652
XmaI CCCGGG 1 cut(s) 389
XspI CTAG 1 cut(s) 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.