Rw6G012380

Belongs to the plant dehydrin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0014045
Physical Location & Seq
Forward (+)
22550618 .. 22551463
846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G012380.1

Sequence Viewer

Length: 567 bp
ATGGCTGAAATTCGCAACGAGTTCGGCAACCCCATCCCGCTCACCGACCAGTATGGCAACCCAGTTCAGCTGACAGACGAGCAAGGCCGCCCCATGCACCTCACTGGTATCGCCACCACCGAGGGCGGCCAAAGCCAAGCCATCCGTACTGGAGAGCAGCAGACCGGTATCGGAACCAGAGGCATCGGTACACACGTCCCTGGCACCGGTCTCCACGTTCCGGGCACGGGCACACACGTTCCGGGCACCGGTGCCCACATCCCCGGGACCGGCATACACATCCCCGGCACAGGTTCTCATGTTCCGGGGACAGGTGCACATGTTCCGGGCACCGGTGAGCACATGCCAGGAACCGGAGCCGGTAGCCACCCGTCAGGTACGGGGACGACCGGTGGTGAGGATGATGGGAAAGGAGGGAGGATCAGGAAGAAGAAGGGACTGAAGGAGAAGATAAAGGAAACCTTTAGCGGTAAACATAAGGATGAGCATCCGGAGGGGGGGCCGCATGAGAAGAAAGGCATGATGGAGAAGATCAAGGAGAAGTTACCTGGTCACCATCCCCACTGA

Protein Analysis

188

Amino Acids

19.39

Weight (kDa)

8.11

Isoelectric Point (pI)

19.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dehydrin PF00257 22 - 186 1.6e-19 Dehydrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21490 AT4G39130
fragaria_vesca FvH4_2g09610
malus_domestica MD10G1069000.v1.1
prunus_persica Prupe.8G091000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0265971
rosa_laevigata RLG00000014143
rosa_multiflora Rmu_co8443205.1_g000001 Rmu_sc0013338.1_g000002
rosa_roxburghii Rroxscaffold_7G00202180
rosa_rugosa Rorug06G0021900
rosa_samantha Rh6AG143200 Rh6BG143500 Rh6CG140100 Rh6DG127800
rosa_wichuraiana Rw0G015570 Rw6G012380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 203, 245, 251, 329
AccBSI CCGCTC 1 cut(s) 40
AccIII TCCGGA 1 cut(s) 490
AciI CCGC 5 cut(s) 38, 88, 126, 468, 503
AclWI GGATC 1 cut(s) 428
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 1 cut(s) 461
AfaI GTAC 3 cut(s) 148, 190, 379
AflIII ACRYGT 3 cut(s) 193, 235, 319
AgeI ACCGGT 5 cut(s) 164, 206, 248, 332, 389
AjiI CACGTC 1 cut(s) 196
AjnI CCWGG 3 cut(s) 199, 346, 547
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw21I GWGCWC 2 cut(s) 319, 342
Alw26I GTCTC 1 cut(s) 215
Alw44I GTGCAC 1 cut(s) 315
AlwI GGATC 1 cut(s) 428
Ama87I CYCGRG 1 cut(s) 263
Aor13HI TCCGGA 1 cut(s) 490
AoxI GGCC 3 cut(s) 85, 127, 500
ApaLI GTGCAC 1 cut(s) 315
ApeKI GCWGC 1 cut(s) 157
ApoI RAATTY 1 cut(s) 9
AsiGI ACCGGT 5 cut(s) 164, 206, 248, 332, 389
AspS9I GGNCC 2 cut(s) 267, 500
AsuC2I CCSGG 7 cut(s) 222, 243, 264, 265, 285, 306, 327
AsuHPI GGTGA 4 cut(s) 34, 347, 407, 545
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 1 cut(s) 267
BaeGI GKGCMC 6 cut(s) 227, 233, 248, 256, 319, 332
BaeI ACNNNNGTAYC 2 cut(s) 180, 213
BanI GGYRCC 4 cut(s) 203, 245, 251, 329
Bbv12I GWGCWC 2 cut(s) 319, 342
BbvI GCAGC 1 cut(s) 169
BccI CCATC 5 cut(s) 41, 149, 398, 517, 564
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BciT130I CCWGG 3 cut(s) 201, 348, 549
BcnI CCSGG 7 cut(s) 222, 243, 264, 265, 285, 306, 327
BcoDI GTCTC 1 cut(s) 215
BisI GCNGC 4 cut(s) 88, 127, 158, 503
BlsI GCNGC 4 cut(s) 89, 128, 159, 504
Bme18I GGWCC 1 cut(s) 267
BmeT110I CYCGRG 1 cut(s) 263
BmgBI CACGTC 1 cut(s) 196
BmgT120I GGNCC 2 cut(s) 267, 500
BmiI GGNNCC 9 cut(s) 175, 205, 247, 253, 268, 331, 352, 358, 501
BmrI ACTGGG 1 cut(s) 56
BmsI GCATC 2 cut(s) 192, 496
BmuI ACTGGG 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 171
BpuMI CCSGG 7 cut(s) 222, 243, 264, 265, 285, 306, 327
BsaBI GATNNNNATC 1 cut(s) 486
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 6 cut(s) 120, 199, 262, 263, 283, 305
BsaWI WCCGGW 7 cut(s) 164, 206, 248, 332, 353, 389, 490
Bse118I RCCGGY 7 cut(s) 164, 206, 248, 269, 332, 359, 389
Bse1I ACTGG 4 cut(s) 49, 62, 109, 154
Bse8I GATNNNNATC 1 cut(s) 486
BseAI TCCGGA 1 cut(s) 490
BseBI CCWGG 3 cut(s) 201, 348, 549
BseDI CCNNGG 6 cut(s) 120, 199, 262, 263, 283, 305
BseGI GGATG 8 cut(s) 33, 141, 258, 279, 406, 487, 487, 556
BseJI GATNNNNATC 1 cut(s) 486
BseNI ACTGG 4 cut(s) 49, 62, 109, 154
BseSI GKGCMC 6 cut(s) 227, 233, 248, 256, 319, 332
BseXI GCAGC 1 cut(s) 169
Bsh1285I CGRYCG 1 cut(s) 390
BshFI GGCC 3 cut(s) 87, 129, 502
BshNI GGYRCC 4 cut(s) 203, 245, 251, 329
BshTI ACCGGT 5 cut(s) 164, 206, 248, 332, 389
BsiEI CGRYCG 1 cut(s) 390
BsiHKAI GWGCWC 2 cut(s) 319, 342
BsiHKCI CYCGRG 1 cut(s) 263
BslFI GGGAC 5 cut(s) 182, 280, 322, 397, 450
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 5 cut(s) 182, 280, 322, 397, 450
BsnI GGCC 3 cut(s) 87, 129, 502
Bso31I GGTCTC 1 cut(s) 215
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 7 cut(s) 227, 233, 248, 256, 319, 332, 342
Bsp13I TCCGGA 1 cut(s) 490
Bsp143I GATC 2 cut(s) 420, 531
BspACI CCGC 5 cut(s) 38, 88, 126, 468, 503
BspANI GGCC 3 cut(s) 87, 129, 502
BspEI TCCGGA 1 cut(s) 490
BspLI GGNNCC 9 cut(s) 175, 205, 247, 253, 268, 331, 352, 358, 501
BspPI GGATC 1 cut(s) 428
BspT107I GGYRCC 4 cut(s) 203, 245, 251, 329
BspTNI GGTCTC 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 40
BsrFI RCCGGY 7 cut(s) 164, 206, 248, 269, 332, 359, 389
BsrI ACTGG 4 cut(s) 49, 62, 109, 154
BssAI RCCGGY 7 cut(s) 164, 206, 248, 269, 332, 359, 389
BssECI CCNNGG 6 cut(s) 120, 199, 262, 263, 283, 305
BssMI GATC 2 cut(s) 420, 531
Bst2UI CCWGG 3 cut(s) 201, 348, 549
BstEII GGTNACC 1 cut(s) 551
BstF5I GGATG 8 cut(s) 33, 141, 258, 279, 406, 487, 487, 556
BstKTI GATC 2 cut(s) 423, 534
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 2 cut(s) 420, 531
BstMCI CGRYCG 1 cut(s) 390
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNI CCWGG 3 cut(s) 201, 348, 549
BstNSI RCATGY 2 cut(s) 323, 346
BstPI GGTNACC 1 cut(s) 551
BstSLI GKGCMC 6 cut(s) 227, 233, 248, 256, 319, 332
BstV1I GCAGC 1 cut(s) 169
BsuRI GGCC 3 cut(s) 87, 129, 502
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 8 cut(s) 33, 141, 258, 279, 406, 487, 487, 556
BtsIMutI CAGTG 2 cut(s) 102, 562
Cfr10I RCCGGY 7 cut(s) 164, 206, 248, 269, 332, 359, 389
Cfr13I GGNCC 2 cut(s) 267, 500
Cfr9I CCCGGG 1 cut(s) 263
CsiI ACCWGGT 1 cut(s) 547
Csp6I GTAC 3 cut(s) 147, 189, 378
CspAI ACCGGT 5 cut(s) 164, 206, 248, 332, 389
CviAII CATG 6 cut(s) 94, 299, 320, 343, 506, 520
CviJI RGCY 9 cut(s) 5, 70, 87, 129, 135, 140, 359, 366, 502
CviKI_1 RGCY 9 cut(s) 5, 70, 87, 129, 135, 140, 359, 366, 502
CviQI GTAC 3 cut(s) 147, 189, 378
DpnI GATC 2 cut(s) 422, 533
DpnII GATC 2 cut(s) 420, 531
EaeI YGGCCR 1 cut(s) 127
Eco31I GGTCTC 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 461
Eco88I CYCGRG 1 cut(s) 263
Eco91I GGTNACC 1 cut(s) 551
EcoO65I GGTNACC 1 cut(s) 551
EcoRII CCWGG 3 cut(s) 199, 346, 547
FaeI CATG 6 cut(s) 97, 302, 323, 346, 509, 523
FaiI YATR 9 cut(s) 54, 95, 275, 300, 321, 344, 477, 507, 521
FalI AAGNNNNNCTT 2 cut(s) 446, 478
FaqI GGGAC 5 cut(s) 182, 280, 322, 397, 450
FatI CATG 6 cut(s) 93, 298, 319, 342, 505, 519
FauI CCCGC 1 cut(s) 45
Fnu4HI GCNGC 4 cut(s) 88, 127, 158, 503
FokI GGATG 8 cut(s) 20, 128, 245, 266, 413, 474, 494, 543
Fsp4HI GCNGC 4 cut(s) 88, 127, 158, 503
GluI GCNGC 4 cut(s) 88, 127, 158, 503
GsuI CTGGAG 1 cut(s) 171
HaeIII GGCC 3 cut(s) 87, 129, 502
Hin1II CATG 6 cut(s) 97, 302, 323, 346, 509, 523
HphI GGTGA 4 cut(s) 34, 347, 407, 545
Hpy166II GTNNAC 3 cut(s) 191, 317, 473
Hpy188I TCNGA 1 cut(s) 173
Hpy188III TCNNGA 2 cut(s) 424, 491
Hpy8I GTNNAC 3 cut(s) 191, 317, 473
HpyAV CCTTC 2 cut(s) 427, 436
HpyCH4IV ACGT 3 cut(s) 195, 216, 237
HpyCH4V TGCA 2 cut(s) 97, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpySE526I ACGT 3 cut(s) 195, 216, 237
Hsp92II CATG 6 cut(s) 97, 302, 323, 346, 509, 523
Kpn2I TCCGGA 1 cut(s) 490
Kzo9I GATC 2 cut(s) 420, 531
LmnI GCTCC 1 cut(s) 356
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 2 cut(s) 192, 496
MabI ACCWGGT 1 cut(s) 547
MaeII ACGT 3 cut(s) 195, 216, 237
MaeIII GTNAC 2 cut(s) 543, 551
MalI GATC 2 cut(s) 422, 533
MbiI CCGCTC 1 cut(s) 40
MboI GATC 2 cut(s) 420, 531
MboII GAAGA 5 cut(s) 439, 442, 460, 523, 541
MhlI GDGCHC 7 cut(s) 227, 233, 248, 256, 319, 332, 342
MluCI AATT 1 cut(s) 9
MnlI CCTC 7 cut(s) 110, 115, 173, 391, 407, 411, 487
MroI TCCGGA 1 cut(s) 490
MslI CAYNNNNRTG 1 cut(s) 480
MspA1I CMGCKG 1 cut(s) 70
MvaI CCWGG 3 cut(s) 201, 348, 549
MwoI GCNNNNNNNGC 1 cut(s) 132
NciI CCSGG 7 cut(s) 222, 243, 264, 265, 285, 306, 327
NdeII GATC 2 cut(s) 420, 531
NlaIII CATG 6 cut(s) 97, 302, 323, 346, 509, 523
NlaIV GGNNCC 9 cut(s) 175, 205, 247, 253, 268, 331, 352, 358, 501
NmuCI GTSAC 1 cut(s) 551
NspI RCATGY 2 cut(s) 323, 346
PciI ACATGT 1 cut(s) 319
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 192
PinAI ACCGGT 5 cut(s) 164, 206, 248, 332, 389
PkrI GCNGC 4 cut(s) 89, 128, 159, 504
PscI ACATGT 1 cut(s) 319
Psp6I CCWGG 3 cut(s) 199, 346, 547
PspEI GGTNACC 1 cut(s) 551
PspGI CCWGG 3 cut(s) 199, 346, 547
PspN4I GGNNCC 9 cut(s) 175, 205, 247, 253, 268, 331, 352, 358, 501
PspPI GGNCC 2 cut(s) 267, 500
PvuII CAGCTG 1 cut(s) 70
RsaI GTAC 3 cut(s) 148, 190, 379
RsaNI GTAC 3 cut(s) 147, 189, 378
RseI CAYNNNNRTG 1 cut(s) 480
SatI GCNGC 4 cut(s) 88, 127, 158, 503
Sau3AI GATC 2 cut(s) 420, 531
Sau96I GGNCC 2 cut(s) 267, 500
SduI GDGCHC 7 cut(s) 227, 233, 248, 256, 319, 332, 342
SexAI ACCWGGT 1 cut(s) 547
SfaNI GCATC 2 cut(s) 192, 496
SgrAI CRCCGGYG 2 cut(s) 248, 332
SinI GGWCC 1 cut(s) 267
SmaI CCCGGG 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 480
Sse9I AATT 1 cut(s) 9
SsiI CCGC 5 cut(s) 38, 88, 126, 468, 503
TaiI ACGT 3 cut(s) 198, 219, 240
TasI AATT 1 cut(s) 9
TauI GCSGC 3 cut(s) 90, 129, 505
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 1 cut(s) 551
TseI GCWGC 1 cut(s) 157
Tsp45I GTSAC 1 cut(s) 551
TspGWI ACGGA 1 cut(s) 134
TspMI CCCGGG 1 cut(s) 263
TspRI CASTG 1 cut(s) 109
VneI GTGCAC 1 cut(s) 315
VpaK11BI GGWCC 1 cut(s) 267
XapI RAATTY 1 cut(s) 9
XceI RCATGY 2 cut(s) 323, 346
XmaI CCCGGG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.