Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014045

Physical Location & Seq

Genomic Coordinates Reverse (-)

18228118 .. 18228854

Gene Structure 737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCGGATCTGAAAGACGAACGAGGAAATCCGATATATCTCACGGACGCACACGGGGAGCCAGCTCAGCTCATGGACGAGTTTGGTAACGCCATGCATTTGACAGGTGTGGCAACCACCGTTCCTCACCTGAAGGAGAGCAGCTACACAGGTCCACACCCAATCACTGCCCCAGTCACCACCACCAATACTCCTCACCACGCACAACCTATTTCCGTGTCCCACGACCCTCTTCAAGACCATGATCTCCGCTGGTTCGGCACCAGTTCGACGGAGGAGAATGGCGAAGGAGTAGGGAGGAAAACTAATATAACGGATGAAACAAAATCGAAGCTAGGCGTCGACAAGCCATCAGCTGCGACCGTAACAGGATCAGGATCAGGATCGGTTCACGAGAAGAAGGGTTTCTTTAAGAAGATTAAGGAGAAACTTTCTGGCCACCATAATGATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004401 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0052745 GO:0052803 GO:0052834 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00053 ko00340 ko00562 ko01100 ko01110 ko01230 ko04070 map00053 map00340 map00562 map01100 map01110 map01230 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

151

Amino Acids

16.26

Weight (kDa)

6.09

Isoelectric Point (pI)

23.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	23 - 148	5.6e-12	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21490 AT4G39130
fragaria_vesca	FvH4_2g09610
malus_domestica	MD10G1069000.v1.1
prunus_persica	Prupe.8G091000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0265971
rosa_laevigata	RLG00000014143
rosa_multiflora	Rmu_co8443205.1_g000001 Rmu_sc0013338.1_g000002
rosa_roxburghii	Rroxscaffold_7G00202180
rosa_rugosa	Rorug06G0021900
rosa_samantha	Rh6AG143200 Rh6BG143500 Rh6CG140100 Rh6DG127800
rosa_wichuraiana	Rw0G015570 Rw6G012380

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	260
AccI	GTMKAC	1 cut(s)	342
AciI	CCGC	2 cut(s)	5, 250
AclWI	GGATC	4 cut(s)	15, 379, 385, 391
AcoI	YGGCCR	1 cut(s)	436
AcuI	CTGAAG	1 cut(s)	152
AcyI	GRCGYC	1 cut(s)	339
AgsI	TTSAA	1 cut(s)	236
AluBI	AGCT	5 cut(s)	65, 70, 144, 334, 356
AluI	AGCT	5 cut(s)	65, 70, 144, 334, 356
AlwI	GGATC	4 cut(s)	15, 379, 385, 391
AoxI	GGCC	1 cut(s)	436
ApeKI	GCWGC	2 cut(s)	141, 356
Asp700I	GAANNNNTTC	1 cut(s)	404
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	3 cut(s)	119, 169, 188
AvaII	GGWCC	1 cut(s)	152
BalI	TGGCCA	1 cut(s)	438
BanI	GGYRCC	1 cut(s)	260
BauI	CACGAG	1 cut(s)	392
BbvI	GCAGC	2 cut(s)	153, 343
BccI	CCATC	1 cut(s)	358
BfaI	CTAG	1 cut(s)	335
BisI	GCNGC	2 cut(s)	142, 357
BlpI	GCTNAGC	1 cut(s)	66
BlsI	GCNGC	2 cut(s)	143, 358
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	2 cut(s)	60, 262
BmrI	ACTGGG	1 cut(s)	167
BmuI	ACTGGG	1 cut(s)	167
Bpu1102I	GCTNAGC	1 cut(s)	66
BsaBI	GATNNNNATC	2 cut(s)	376, 382
BsaHI	GRCGYC	1 cut(s)	339
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bse1I	ACTGG	2 cut(s)	173, 264
Bse8I	GATNNNNATC	2 cut(s)	376, 382
BseGI	GGATG	1 cut(s)	322
BseJI	GATNNNNATC	2 cut(s)	376, 382
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	2 cut(s)	173, 264
BseRI	GAGGAG	2 cut(s)	183, 290
BseXI	GCAGC	2 cut(s)	153, 343
Bsh1285I	CGRYCG	1 cut(s)	363
BshFI	GGCC	1 cut(s)	438
BshNI	GGYRCC	1 cut(s)	260
BsiEI	CGRYCG	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	438
Bsp143I	GATC	6 cut(s)	7, 244, 371, 377, 383, 448
Bsp1720I	GCTNAGC	1 cut(s)	66
BspACI	CCGC	2 cut(s)	5, 250
BspANI	GGCC	1 cut(s)	438
BspCNI	CTCAG	1 cut(s)	79
BspLI	GGNNCC	2 cut(s)	60, 262
BspPI	GGATC	4 cut(s)	15, 379, 385, 391
BspT107I	GGYRCC	1 cut(s)	260
BsrI	ACTGG	2 cut(s)	173, 264
BssMI	GATC	6 cut(s)	7, 244, 371, 377, 383, 448
BssNI	GRCGYC	1 cut(s)	339
BssSI	CACGAG	1 cut(s)	392
Bst2BI	CACGAG	1 cut(s)	392
Bst4CI	ACNGT	2 cut(s)	121, 364
Bst6I	CTCTTC	1 cut(s)	237
BstACI	GRCGYC	1 cut(s)	339
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	6 cut(s)	10, 247, 374, 380, 386, 451
BstMBI	GATC	6 cut(s)	7, 244, 371, 377, 383, 448
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 258
BstV1I	GCAGC	2 cut(s)	153, 343
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	438
BtsCI	GGATG	1 cut(s)	322
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	152
CseI	GACGC	2 cut(s)	56, 328
CviAII	CATG	3 cut(s)	73, 94, 242
CviJI	RGCY	8 cut(s)	61, 65, 70, 144, 334, 349, 356, 438
CviKI_1	RGCY	8 cut(s)	61, 65, 70, 144, 334, 349, 356, 438
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	6 cut(s)	9, 246, 373, 379, 385, 450
DpnII	GATC	6 cut(s)	7, 244, 371, 377, 383, 448
EaeI	YGGCCR	1 cut(s)	436
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	152
EcoT22I	ATGCAT	1 cut(s)	99
FaeI	CATG	3 cut(s)	76, 97, 245
FaiI	YATR	6 cut(s)	37, 74, 95, 243, 311, 444
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	3 cut(s)	72, 93, 241
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	2 cut(s)	142, 357
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	2 cut(s)	142, 357
FspBI	CTAG	1 cut(s)	335
GluI	GCNGC	2 cut(s)	142, 357
HaeIII	GGCC	1 cut(s)	438
HgaI	GACGC	2 cut(s)	56, 328
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	3 cut(s)	76, 97, 245
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HphI	GGTGA	3 cut(s)	119, 169, 188
Hpy166II	GTNNAC	3 cut(s)	155, 343, 391
Hpy188I	TCNGA	2 cut(s)	12, 33
Hpy188III	TCNNGA	4 cut(s)	236, 375, 381, 392
Hpy8I	GTNNAC	3 cut(s)	155, 343, 391
Hpy99I	CGWCG	2 cut(s)	274, 344
HpyAV	CCTTC	3 cut(s)	127, 281, 394
HpyCH4III	ACNGT	2 cut(s)	121, 364
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 258
HpyF3I	CTNAG	1 cut(s)	66
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	3 cut(s)	76, 97, 245
Kzo9I	GATC	6 cut(s)	7, 244, 371, 377, 383, 448
LmnI	GCTCC	1 cut(s)	58
Lsp1109I	GCAGC	2 cut(s)	153, 343
MaeI	CTAG	1 cut(s)	335
MaeIII	GTNAC	3 cut(s)	86, 175, 364
MalI	GATC	6 cut(s)	9, 246, 373, 379, 385, 450
MboI	GATC	6 cut(s)	7, 244, 371, 377, 383, 448
MboII	GAAGA	3 cut(s)	224, 409, 427
MflI	RGATCY	1 cut(s)	7
MlsI	TGGCCA	1 cut(s)	438
MluNI	TGGCCA	1 cut(s)	438
MnlI	CCTC	6 cut(s)	17, 135, 204, 240, 268, 291
Mox20I	TGGCCA	1 cut(s)	438
Mph1103I	ATGCAT	1 cut(s)	99
MroXI	GAANNNNTTC	1 cut(s)	404
MscI	TGGCCA	1 cut(s)	438
MseI	TTAA	2 cut(s)	411, 420
MslI	CAYNNNNRTG	1 cut(s)	444
Msp20I	TGGCCA	1 cut(s)	438
MspA1I	CMGCKG	2 cut(s)	252, 356
MwoI	GCNNNNNNNGC	2 cut(s)	67, 258
NdeII	GATC	6 cut(s)	7, 244, 371, 377, 383, 448
NlaIII	CATG	3 cut(s)	76, 97, 245
NlaIV	GGNNCC	2 cut(s)	60, 262
NmuCI	GTSAC	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	404
PkrI	GCNGC	2 cut(s)	143, 358
PspN4I	GGNNCC	2 cut(s)	60, 262
PspPI	GGNCC	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	356
RseI	CAYNNNNRTG	1 cut(s)	444
SalI	GTCGAC	1 cut(s)	341
SaqAI	TTAA	2 cut(s)	411, 420
SatI	GCNGC	2 cut(s)	142, 357
Sau3AI	GATC	6 cut(s)	7, 244, 371, 377, 383, 448
Sau96I	GGNCC	1 cut(s)	152
SetI	ASST	9 cut(s)	67, 72, 109, 132, 146, 154, 211, 336, 358
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	444
SsiI	CCGC	2 cut(s)	5, 250
SspMI	CTAG	1 cut(s)	335
TaaI	ACNGT	2 cut(s)	121, 364
TaqI	TCGA	3 cut(s)	269, 329, 342
Tru1I	TTAA	2 cut(s)	411, 420
Tru9I	TTAA	2 cut(s)	411, 420
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	2 cut(s)	141, 356
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	333
TspGWI	ACGGA	4 cut(s)	59, 205, 287, 329
TspRI	CASTG	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	1 cut(s)	335
Zsp2I	ATGCAT	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.