Rh6CG140100

Belongs to the plant dehydrin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0014045
Physical Location & Seq
Forward (+)
18116834 .. 18118062
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG140100.1

Sequence Viewer

Length: 756 bp
ATGGCTGAAATTCGCAACGAGTTCGGCAACCCCATCCCGCTCACCGACCAGTATGGCAACCCAGTTCAGCTGACAGACGAGCAAGGCCGCCCCATGCACCTCACTGGTATCGCCACCACCGAGGGCGGCCAAAGCCAAGCCATCCGTACTGGAGAGCAGCAGACCGGTATCGGAACCAGAGGCATCGGTACACACGTCCCTGGCACCGGTCTCCACGTTCCGGGCACGGGCACGGGCACACACGTTCCGGGCACCGGTGCCCACATCCCCGGGACCGGCATACACATCCCCGGCACAGGTTCTCATGTTCCGGGGATAGGTGCACATGTTCCGGGCACCGGTGAGCACATGCCAGGAACCGGAGCCGGTAGCCACCCGTCAGGTACGGGGACGACCGGTGGTGTTGCTGGAGTGAAGGCTGATGAAGTTATCACCGAGCATGCCATGCATGGTATTGGAAAACCCAAAACTGTAGGTGAACATCTACAACAGGAGCGCCACACCGGTGAGGCTGGTGAACACCGTCGCAGCTCGAGCTCTAGTTCTTCGGAGGAGGATGATGGGAAAGGAGGGAGGATCAGGAAGAAGAAGGGACTGAAGGAGAAGATAAAGGAAACCTTTAGCGGTAAACATAAGGATGAGCATCCGGAGGGGGGGCCGGCCTTCAAGACCCCCACGATGACTCCTCAGGAGCATGAGAAGAAAAGCATGATGGAGAAGATCAAGGAGAAGTTACCTGGTCACCATCCCCACTGA

Protein Analysis

251

Amino Acids

26.14

Weight (kDa)

7.09

Isoelectric Point (pI)

31.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dehydrin PF00257 22 - 249 3.6e-29 Dehydrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21490 AT4G39130
fragaria_vesca FvH4_2g09610
malus_domestica MD10G1069000.v1.1
prunus_persica Prupe.8G091000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0265971
rosa_laevigata RLG00000014143
rosa_multiflora Rmu_co8443205.1_g000001 Rmu_sc0013338.1_g000002
rosa_roxburghii Rroxscaffold_7G00202180
rosa_rugosa Rorug06G0021900
rosa_samantha Rh6AG143200 Rh6BG143500 Rh6CG140100 Rh6DG127800
rosa_wichuraiana Rw0G015570 Rw6G012380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 203, 251, 257, 335
AccBSI CCGCTC 1 cut(s) 40
AccIII TCCGGA 1 cut(s) 646
AciI CCGC 4 cut(s) 38, 88, 126, 624
AclWI GGATC 1 cut(s) 584
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 1 cut(s) 617
AfaI GTAC 3 cut(s) 148, 190, 385
AflIII ACRYGT 3 cut(s) 193, 241, 325
AgeI ACCGGT 6 cut(s) 164, 206, 254, 338, 395, 503
AgsI TTSAA 1 cut(s) 667
AjiI CACGTC 1 cut(s) 196
AjnI CCWGG 3 cut(s) 199, 352, 736
AleI CACNNNNGTG 1 cut(s) 504
AluBI AGCT 3 cut(s) 70, 531, 537
AluI AGCT 3 cut(s) 70, 531, 537
Alw21I GWGCWC 3 cut(s) 325, 348, 539
Alw26I GTCTC 1 cut(s) 215
Alw44I GTGCAC 1 cut(s) 321
AlwI GGATC 1 cut(s) 584
Ama87I CYCGRG 2 cut(s) 269, 532
Aor13HI TCCGGA 1 cut(s) 646
AoxI GGCC 4 cut(s) 85, 127, 656, 660
ApaLI GTGCAC 1 cut(s) 321
ApeKI GCWGC 2 cut(s) 157, 528
ApoI RAATTY 1 cut(s) 9
AsiGI ACCGGT 6 cut(s) 164, 206, 254, 338, 395, 503
AspLEI GCGC 1 cut(s) 498
AspS9I GGNCC 2 cut(s) 273, 656
AsuC2I CCSGG 7 cut(s) 222, 249, 270, 271, 291, 312, 333
AsuHPI GGTGA 7 cut(s) 34, 353, 424, 488, 518, 527, 734
AvaI CYCGRG 2 cut(s) 269, 532
AvaII GGWCC 1 cut(s) 273
AxyI CCTNAGG 1 cut(s) 687
BaeGI GKGCMC 7 cut(s) 227, 233, 239, 254, 262, 325, 338
BaeI ACNNNNGTAYC 2 cut(s) 180, 213
BanI GGYRCC 4 cut(s) 203, 251, 257, 335
BanII GRGCYC 1 cut(s) 539
Bbv12I GWGCWC 3 cut(s) 325, 348, 539
BbvI GCAGC 2 cut(s) 169, 540
BccI CCATC 5 cut(s) 41, 149, 554, 706, 753
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BciT130I CCWGG 3 cut(s) 201, 354, 738
BcnI CCSGG 7 cut(s) 222, 249, 270, 271, 291, 312, 333
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 1 cut(s) 540
BfmI CTRYAG 1 cut(s) 471
BfoI RGCGCY 1 cut(s) 499
BisI GCNGC 4 cut(s) 88, 127, 158, 529
BlsI GCNGC 4 cut(s) 89, 128, 159, 530
Bme18I GGWCC 1 cut(s) 273
BmeT110I CYCGRG 2 cut(s) 269, 532
BmgBI CACGTC 1 cut(s) 196
BmgT120I GGNCC 2 cut(s) 273, 656
BmiI GGNNCC 9 cut(s) 175, 205, 253, 259, 274, 337, 358, 364, 657
BmrI ACTGGG 1 cut(s) 56
BmsI GCATC 2 cut(s) 192, 652
BmuI ACTGGG 1 cut(s) 56
BpmI CTGGAG 2 cut(s) 171, 429
BpuMI CCSGG 7 cut(s) 222, 249, 270, 271, 291, 312, 333
BsaBI GATNNNNATC 1 cut(s) 642
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 6 cut(s) 120, 199, 268, 269, 289, 311
BsaWI WCCGGW 8 cut(s) 164, 206, 254, 338, 359, 395, 503, 646
BsaXI ACNNNNNCTCC 2 cut(s) 667, 697
Bse118I RCCGGY 9 cut(s) 164, 206, 254, 275, 338, 365, 395, 503, 658
Bse1I ACTGG 4 cut(s) 49, 62, 109, 154
Bse21I CCTNAGG 1 cut(s) 687
Bse8I GATNNNNATC 1 cut(s) 642
BseAI TCCGGA 1 cut(s) 646
BseBI CCWGG 3 cut(s) 201, 354, 738
BseDI CCNNGG 6 cut(s) 120, 199, 268, 269, 289, 311
BseGI GGATG 8 cut(s) 33, 141, 264, 285, 562, 643, 643, 745
BseJI GATNNNNATC 1 cut(s) 642
BseMII CTCAG 1 cut(s) 701
BseNI ACTGG 4 cut(s) 49, 62, 109, 154
BseRI GAGGAG 2 cut(s) 566, 675
BseSI GKGCMC 7 cut(s) 227, 233, 239, 254, 262, 325, 338
BseXI GCAGC 2 cut(s) 169, 540
Bsh1285I CGRYCG 1 cut(s) 396
BshFI GGCC 4 cut(s) 87, 129, 658, 662
BshNI GGYRCC 4 cut(s) 203, 251, 257, 335
BshTI ACCGGT 6 cut(s) 164, 206, 254, 338, 395, 503
BsiEI CGRYCG 1 cut(s) 396
BsiHKAI GWGCWC 3 cut(s) 325, 348, 539
BsiHKCI CYCGRG 2 cut(s) 269, 532
BslFI GGGAC 4 cut(s) 182, 286, 403, 606
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 4 cut(s) 182, 286, 403, 606
BsnI GGCC 4 cut(s) 87, 129, 658, 662
Bso31I GGTCTC 1 cut(s) 215
BsoBI CYCGRG 2 cut(s) 269, 532
Bsp1286I GDGCHC 9 cut(s) 227, 233, 239, 254, 262, 325, 338, 348, 539
Bsp13I TCCGGA 1 cut(s) 646
Bsp143I GATC 2 cut(s) 576, 720
BspACI CCGC 4 cut(s) 38, 88, 126, 624
BspANI GGCC 4 cut(s) 87, 129, 658, 662
BspCNI CTCAG 1 cut(s) 700
BspEI TCCGGA 1 cut(s) 646
BspLI GGNNCC 9 cut(s) 175, 205, 253, 259, 274, 337, 358, 364, 657
BspPI GGATC 1 cut(s) 584
BspT107I GGYRCC 4 cut(s) 203, 251, 257, 335
BspTNI GGTCTC 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 40
BsrFI RCCGGY 9 cut(s) 164, 206, 254, 275, 338, 365, 395, 503, 658
BsrI ACTGG 4 cut(s) 49, 62, 109, 154
BssAI RCCGGY 9 cut(s) 164, 206, 254, 275, 338, 365, 395, 503, 658
BssECI CCNNGG 6 cut(s) 120, 199, 268, 269, 289, 311
BssMI GATC 2 cut(s) 576, 720
Bst2UI CCWGG 3 cut(s) 201, 354, 738
Bst4CI ACNGT 2 cut(s) 472, 524
BstAPI GCANNNNNTGC 1 cut(s) 445
BstC8I GCNNGC 2 cut(s) 441, 660
BstDEI CTNAG 1 cut(s) 687
BstEII GGTNACC 1 cut(s) 740
BstF5I GGATG 8 cut(s) 33, 141, 264, 285, 562, 643, 643, 745
BstH2I RGCGCY 1 cut(s) 499
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 2 cut(s) 579, 723
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 2 cut(s) 576, 720
BstMCI CGRYCG 1 cut(s) 396
BstMWI GCNNNNNNNGC 3 cut(s) 132, 445, 534
BstNI CCWGG 3 cut(s) 201, 354, 738
BstNSI RCATGY 3 cut(s) 329, 352, 443
BstPI GGTNACC 1 cut(s) 740
BstSFI CTRYAG 1 cut(s) 471
BstSLI GKGCMC 7 cut(s) 227, 233, 239, 254, 262, 325, 338
BstV1I GCAGC 2 cut(s) 169, 540
Bsu36I CCTNAGG 1 cut(s) 687
BsuRI GGCC 4 cut(s) 87, 129, 658, 662
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 8 cut(s) 33, 141, 264, 285, 562, 643, 643, 745
BtsIMutI CAGTG 2 cut(s) 102, 751
Cac8I GCNNGC 2 cut(s) 441, 660
CfoI GCGC 1 cut(s) 498
Cfr10I RCCGGY 9 cut(s) 164, 206, 254, 275, 338, 365, 395, 503, 658
Cfr13I GGNCC 2 cut(s) 273, 656
Cfr9I CCCGGG 1 cut(s) 269
CsiI ACCWGGT 1 cut(s) 736
Csp6I GTAC 3 cut(s) 147, 189, 384
CspAI ACCGGT 6 cut(s) 164, 206, 254, 338, 395, 503
CviAII CATG 9 cut(s) 94, 305, 326, 349, 440, 445, 449, 695, 709
CviQI GTAC 3 cut(s) 147, 189, 384
DdeI CTNAG 1 cut(s) 687
DpnI GATC 2 cut(s) 578, 722
DpnII GATC 2 cut(s) 576, 720
EaeI YGGCCR 1 cut(s) 127
Ecl136II GAGCTC 1 cut(s) 537
Eco24I GRGCYC 1 cut(s) 539
Eco31I GGTCTC 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 273
Eco53kI GAGCTC 1 cut(s) 537
Eco57I CTGAAG 1 cut(s) 617
Eco81I CCTNAGG 1 cut(s) 687
Eco88I CYCGRG 2 cut(s) 269, 532
Eco91I GGTNACC 1 cut(s) 740
EcoICRI GAGCTC 1 cut(s) 537
EcoO65I GGTNACC 1 cut(s) 740
EcoRII CCWGG 3 cut(s) 199, 352, 736
EcoT22I ATGCAT 1 cut(s) 450
EcoT38I GRGCYC 1 cut(s) 539
FaeI CATG 9 cut(s) 97, 308, 329, 352, 443, 448, 452, 698, 712
FalI AAGNNNNNCTT 2 cut(s) 602, 634
FaqI GGGAC 4 cut(s) 182, 286, 403, 606
FatI CATG 9 cut(s) 93, 304, 325, 348, 439, 444, 448, 694, 708
FauI CCCGC 1 cut(s) 45
Fnu4HI GCNGC 4 cut(s) 88, 127, 158, 529
FokI GGATG 8 cut(s) 20, 128, 251, 272, 569, 630, 650, 732
FriOI GRGCYC 1 cut(s) 539
FseI GGCCGGCC 1 cut(s) 662
Fsp4HI GCNGC 4 cut(s) 88, 127, 158, 529
FspBI CTAG 1 cut(s) 540
GlaI GCGC 1 cut(s) 497
GluI GCNGC 4 cut(s) 88, 127, 158, 529
GsuI CTGGAG 2 cut(s) 171, 429
HaeII RGCGCY 1 cut(s) 499
HaeIII GGCC 4 cut(s) 87, 129, 658, 662
HhaI GCGC 1 cut(s) 498
Hin1II CATG 9 cut(s) 97, 308, 329, 352, 443, 448, 452, 698, 712
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HinfI GANTC 1 cut(s) 682
HphI GGTGA 7 cut(s) 34, 353, 424, 488, 518, 527, 734
Hpy166II GTNNAC 5 cut(s) 191, 323, 479, 518, 629
Hpy188I TCNGA 2 cut(s) 173, 550
Hpy188III TCNNGA 4 cut(s) 580, 647, 667, 689
Hpy8I GTNNAC 5 cut(s) 191, 323, 479, 518, 629
Hpy99I CGWCG 1 cut(s) 528
HpyAV CCTTC 4 cut(s) 409, 583, 592, 673
HpyCH4III ACNGT 2 cut(s) 472, 524
HpyCH4IV ACGT 3 cut(s) 195, 216, 243
HpyCH4V TGCA 3 cut(s) 97, 323, 448
HpyF10VI GCNNNNNNNGC 3 cut(s) 132, 445, 534
HpyF3I CTNAG 1 cut(s) 687
HpySE526I ACGT 3 cut(s) 195, 216, 243
Hsp92II CATG 9 cut(s) 97, 308, 329, 352, 443, 448, 452, 698, 712
HspAI GCGC 1 cut(s) 496
Kpn2I TCCGGA 1 cut(s) 646
KroI GCCGGC 1 cut(s) 658
KroNI GCCGGC 1 cut(s) 660
Kzo9I GATC 2 cut(s) 576, 720
LmnI GCTCC 3 cut(s) 362, 493, 691
Lsp1109I GCAGC 2 cut(s) 169, 540
LweI GCATC 2 cut(s) 192, 652
MabI ACCWGGT 1 cut(s) 736
MaeI CTAG 1 cut(s) 540
MaeII ACGT 3 cut(s) 195, 216, 243
MaeIII GTNAC 2 cut(s) 732, 740
MalI GATC 2 cut(s) 578, 722
MbiI CCGCTC 1 cut(s) 40
MboI GATC 2 cut(s) 576, 720
MboII GAAGA 6 cut(s) 537, 595, 598, 616, 712, 730
MhlI GDGCHC 9 cut(s) 227, 233, 239, 254, 262, 325, 338, 348, 539
MluCI AATT 1 cut(s) 9
MlyI GAGTC 1 cut(s) 676
Mph1103I ATGCAT 1 cut(s) 450
MroI TCCGGA 1 cut(s) 646
MroNI GCCGGC 1 cut(s) 658
MslI CAYNNNNRTG 2 cut(s) 504, 636
MspA1I CMGCKG 1 cut(s) 70
MvaI CCWGG 3 cut(s) 201, 354, 738
MwoI GCNNNNNNNGC 3 cut(s) 132, 445, 534
NaeI GCCGGC 1 cut(s) 660
NciI CCSGG 7 cut(s) 222, 249, 270, 271, 291, 312, 333
NdeII GATC 2 cut(s) 576, 720
NgoMIV GCCGGC 1 cut(s) 658
NlaIII CATG 9 cut(s) 97, 308, 329, 352, 443, 448, 452, 698, 712
NlaIV GGNNCC 9 cut(s) 175, 205, 253, 259, 274, 337, 358, 364, 657
NmuCI GTSAC 1 cut(s) 740
NsiI ATGCAT 1 cut(s) 450
NspI RCATGY 3 cut(s) 329, 352, 443
OliI CACNNNNGTG 1 cut(s) 504
PaeI GCATGC 1 cut(s) 443
PaeR7I CTCGAG 1 cut(s) 532
PciI ACATGT 1 cut(s) 325
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 192
PdiI GCCGGC 1 cut(s) 660
PinAI ACCGGT 6 cut(s) 164, 206, 254, 338, 395, 503
PkrI GCNGC 4 cut(s) 89, 128, 159, 530
PleI GAGTC 1 cut(s) 676
PpsI GAGTC 1 cut(s) 676
PscI ACATGT 1 cut(s) 325
Psp124BI GAGCTC 1 cut(s) 539
Psp6I CCWGG 3 cut(s) 199, 352, 736
PspEI GGTNACC 1 cut(s) 740
PspGI CCWGG 3 cut(s) 199, 352, 736
PspN4I GGNNCC 9 cut(s) 175, 205, 253, 259, 274, 337, 358, 364, 657
PspPI GGNCC 2 cut(s) 273, 656
PspXI VCTCGAGB 1 cut(s) 532
PvuII CAGCTG 1 cut(s) 70
RigI GGCCGGCC 1 cut(s) 662
RsaI GTAC 3 cut(s) 148, 190, 385
RsaNI GTAC 3 cut(s) 147, 189, 384
RseI CAYNNNNRTG 2 cut(s) 504, 636
SacI GAGCTC 1 cut(s) 539
SatI GCNGC 4 cut(s) 88, 127, 158, 529
Sau3AI GATC 2 cut(s) 576, 720
Sau96I GGNCC 2 cut(s) 273, 656
SchI GAGTC 1 cut(s) 676
SduI GDGCHC 9 cut(s) 227, 233, 239, 254, 262, 325, 338, 348, 539
SexAI ACCWGGT 1 cut(s) 736
SfaNI GCATC 2 cut(s) 192, 652
SfcI CTRYAG 1 cut(s) 471
Sfr274I CTCGAG 1 cut(s) 532
SgrAI CRCCGGYG 3 cut(s) 254, 338, 503
SinI GGWCC 1 cut(s) 273
SlaI CTCGAG 1 cut(s) 532
SmaI CCCGGG 1 cut(s) 271
SmiMI CAYNNNNRTG 2 cut(s) 504, 636
SmlI CTYRAG 1 cut(s) 532
SmoI CTYRAG 1 cut(s) 532
SphI GCATGC 1 cut(s) 443
Sse9I AATT 1 cut(s) 9
SsiI CCGC 4 cut(s) 38, 88, 126, 624
SspMI CTAG 1 cut(s) 540
SstI GAGCTC 1 cut(s) 539
TaaI ACNGT 2 cut(s) 472, 524
TaiI ACGT 3 cut(s) 198, 219, 246
TaqI TCGA 1 cut(s) 533
TasI AATT 1 cut(s) 9
TauI GCSGC 2 cut(s) 90, 129
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 1 cut(s) 740
TseI GCWGC 2 cut(s) 157, 528
Tsp45I GTSAC 1 cut(s) 740
TspDTI ATGAA 1 cut(s) 438
TspGWI ACGGA 1 cut(s) 134
TspMI CCCGGG 1 cut(s) 269
TspRI CASTG 1 cut(s) 109
VneI GTGCAC 1 cut(s) 321
VpaK11BI GGWCC 1 cut(s) 273
XapI RAATTY 1 cut(s) 9
XceI RCATGY 3 cut(s) 329, 352, 443
XhoI CTCGAG 1 cut(s) 532
XmaI CCCGGG 1 cut(s) 269
XspI CTAG 1 cut(s) 540
Zsp2I ATGCAT 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.