Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0014045

Physical Location & Seq

Genomic Coordinates Reverse (-)

9469917 .. 9470910

Gene Structure 994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1069000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCTCAAATTAGAGACGAGTACGGAAACCCGGTGCAGCTCACAGACGAGCATGGAAACCCTGTCAAACTGACAGACGAGCTTGGAAACCCTATTCACCTCACAGGCGTGGCCACCACGGGCGGAACTGGCACTGAAGCACACACTGGTGCAGCTCCGCATGTTCCCGGCTCTGGAACCACCGGAGGGTATGGAGAGCATGGTGGCGCTGCTGGAGTTACGGGAGGGCATGGCATGTTTGGTGGCAAACAAACAAGTGATCAATCTCCTGGGTACGGTGTTGGTGTTGGTGTCGTTGAGCATCGGCAACAGCAGCCCCATGGCAGTCTTGGTAGTGAACTCCGCCGTTCCGGCAGCTCTAGCTCAAGCTCCAGCTCTGAGGATGATGGGCAAGGTGGGAGGAGGAAGAAGGGACTGAAGGAGAAAATAAAGGACAAACTCGGTGGTGGGAAGCATAAGGACGATCAGCAGCAAGCAAAGACACAGGGCCATGGACATGAAACCGAAGTTGTTCAAACCACCAGAGTCACAACCGAGCCTGAGAAGAAAAGCATGATGGAGAAGATCAAGGACAAGTTGCCTGGTCATCATAGCCACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

201

Amino Acids

20.82

Weight (kDa)

6.93

Isoelectric Point (pI)

35.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	22 - 197	4e-42	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21490 AT4G39130
fragaria_vesca	FvH4_2g09610
malus_domestica	MD10G1069000.v1.1
prunus_persica	Prupe.8G091000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0265971
rosa_laevigata	RLG00000014143
rosa_multiflora	Rmu_co8443205.1_g000001 Rmu_sc0013338.1_g000002
rosa_roxburghii	Rroxscaffold_7G00202180
rosa_rugosa	Rorug06G0021900
rosa_samantha	Rh6AG143200 Rh6BG143500 Rh6CG140100 Rh6DG127800
rosa_wichuraiana	Rw0G015570 Rw6G012380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	123, 158, 343
AcoI	YGGCCR	1 cut(s)	111
AcuI	CTGAAG	2 cut(s)	156, 437
AfaI	GTAC	2 cut(s)	23, 275
AfiI	CCNNNNNNNGG	3 cut(s)	173, 186, 275
AgsI	TTSAA	1 cut(s)	515
AjnI	CCWGG	2 cut(s)	268, 580
AleI	CACNNNNGTG	2 cut(s)	107, 147
AluBI	AGCT	7 cut(s)	40, 82, 155, 357, 363, 369, 375
AluI	AGCT	7 cut(s)	40, 82, 155, 357, 363, 369, 375
Alw26I	GTCTC	1 cut(s)	9
AoxI	GGCC	2 cut(s)	111, 487
ApeKI	GCWGC	6 cut(s)	37, 152, 209, 313, 354, 469
Asp700I	GAANNNNTTC	1 cut(s)	510
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	487
AsuC2I	CCSGG	2 cut(s)	32, 168
AsuHPI	GGTGA	1 cut(s)	89
BalI	TGGCCA	1 cut(s)	113
BbvI	GCAGC	6 cut(s)	49, 164, 196, 325, 366, 481
BccI	CCATC	2 cut(s)	380, 550
BceAI	ACGGC	1 cut(s)	330
BciT130I	CCWGG	2 cut(s)	270, 582
BclI	TGATCA	1 cut(s)	259
BcnI	CCSGG	2 cut(s)	32, 168
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	360
BfoI	RGCGCY	1 cut(s)	210
BglI	GCCNNNNNGGC	1 cut(s)	351
BisI	GCNGC	6 cut(s)	38, 153, 210, 314, 355, 470
BlsI	GCNGC	6 cut(s)	39, 154, 211, 315, 356, 471
Bme1390I	CCNGG	4 cut(s)	32, 168, 270, 582
BmgT120I	GGNCC	1 cut(s)	487
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	4 cut(s)	32, 168, 270, 582
BmsI	GCATC	1 cut(s)	310
BpmI	CTGGAG	2 cut(s)	234, 355
BpuEI	CTTGAG	1 cut(s)	349
BpuMI	CCSGG	2 cut(s)	32, 168
BsaJI	CCNNGG	4 cut(s)	117, 269, 319, 490
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 186, 275
Bse1I	ACTGG	3 cut(s)	133, 151, 598
BseBI	CCWGG	2 cut(s)	270, 582
BseDI	CCNNGG	4 cut(s)	117, 269, 319, 490
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	3 cut(s)	173, 186, 275
BseMII	CTCAG	2 cut(s)	369, 531
BseNI	ACTGG	3 cut(s)	133, 151, 598
BseRI	GAGGAG	1 cut(s)	415
BseXI	GCAGC	6 cut(s)	49, 164, 196, 325, 366, 481
BsgI	GTGCAG	2 cut(s)	56, 171
BshFI	GGCC	2 cut(s)	113, 489
BsiSI	CCGG	4 cut(s)	32, 168, 183, 351
BslFI	GGGAC	1 cut(s)	426
BslI	CCNNNNNNNGG	3 cut(s)	173, 186, 275
BsmAI	GTCTC	1 cut(s)	9
BsmBI	CGTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	426
BsnI	GGCC	2 cut(s)	113, 489
Bsp143I	GATC	3 cut(s)	259, 463, 564
Bsp19I	CCATGG	2 cut(s)	319, 490
BspACI	CCGC	3 cut(s)	123, 158, 343
BspANI	GGCC	2 cut(s)	113, 489
BspCNI	CTCAG	2 cut(s)	370, 532
BspLI	GGNNCC	1 cut(s)	178
BsrI	ACTGG	3 cut(s)	133, 151, 598
BssECI	CCNNGG	4 cut(s)	117, 269, 319, 490
BssMI	GATC	3 cut(s)	259, 463, 564
BssT1I	CCWWGG	2 cut(s)	319, 490
Bst2UI	CCWGG	2 cut(s)	270, 582
Bst4CI	ACNGT	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	2 cut(s)	378, 540
BstDSI	CCRYGG	3 cut(s)	117, 319, 490
BstF5I	GGATG	1 cut(s)	388
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	3 cut(s)	262, 466, 567
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	259, 463, 564
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 313, 351, 360
BstNI	CCWGG	2 cut(s)	270, 582
BstNSI	RCATGY	2 cut(s)	164, 238
BstSCI	CCNGG	4 cut(s)	30, 166, 268, 580
BstV1I	GCAGC	6 cut(s)	49, 164, 196, 325, 366, 481
BsuRI	GGCC	2 cut(s)	113, 489
BtgI	CCRYGG	3 cut(s)	117, 319, 490
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	2 cut(s)	132, 144
Cac8I	GCNNGC	1 cut(s)	474
CfoI	GCGC	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	487
Csp6I	GTAC	2 cut(s)	22, 274
CspCI	CAANNNNNGTGG	2 cut(s)	424, 459
CviAII	CATG	9 cut(s)	53, 161, 200, 230, 235, 320, 491, 497, 553
CviQI	GTAC	2 cut(s)	22, 274
DdeI	CTNAG	2 cut(s)	378, 540
DpnI	GATC	3 cut(s)	261, 465, 566
DpnII	GATC	3 cut(s)	259, 463, 564
EaeI	YGGCCR	1 cut(s)	111
EciI	GGCGGA	2 cut(s)	138, 332
Eco130I	CCWWGG	2 cut(s)	319, 490
Eco57I	CTGAAG	2 cut(s)	156, 437
EcoRII	CCWGG	2 cut(s)	268, 580
EcoT14I	CCWWGG	2 cut(s)	319, 490
ErhI	CCWWGG	2 cut(s)	319, 490
Esp3I	CGTCTC	1 cut(s)	9
FaeI	CATG	9 cut(s)	56, 164, 203, 233, 238, 323, 494, 500, 556
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	9 cut(s)	52, 160, 199, 229, 234, 319, 490, 496, 552
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	6 cut(s)	38, 153, 210, 314, 355, 470
FokI	GGATG	1 cut(s)	395
Fsp4HI	GCNGC	6 cut(s)	38, 153, 210, 314, 355, 470
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	6 cut(s)	38, 153, 210, 314, 355, 470
GsuI	CTGGAG	2 cut(s)	234, 355
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	2 cut(s)	113, 489
HapII	CCGG	4 cut(s)	32, 168, 183, 351
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	9 cut(s)	56, 164, 203, 233, 238, 323, 494, 500, 556
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HinfI	GANTC	1 cut(s)	525
HpaII	CCGG	4 cut(s)	32, 168, 183, 351
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	338
Hpy188I	TCNGA	1 cut(s)	379
Hpy188III	TCNNGA	1 cut(s)	174
Hpy8I	GTNNAC	1 cut(s)	338
HpyAV	CCTTC	2 cut(s)	403, 412
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	2 cut(s)	37, 152
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 313, 351, 360
HpyF3I	CTNAG	2 cut(s)	378, 540
Hsp92II	CATG	9 cut(s)	56, 164, 203, 233, 238, 323, 494, 500, 556
HspAI	GCGC	1 cut(s)	207
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	3 cut(s)	259, 463, 564
LmnI	GCTCC	2 cut(s)	160, 374
Lsp1109I	GCAGC	6 cut(s)	49, 164, 196, 325, 366, 481
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	1 cut(s)	360
MaeIII	GTNAC	2 cut(s)	217, 526
MalI	GATC	3 cut(s)	261, 465, 566
MboI	GATC	3 cut(s)	259, 463, 564
MboII	GAAGA	3 cut(s)	418, 556, 574
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	1 cut(s)	9
MluNI	TGGCCA	1 cut(s)	113
MlyI	GAGTC	1 cut(s)	534
MnlI	CCTC	6 cut(s)	110, 179, 218, 373, 393, 396
Mox20I	TGGCCA	1 cut(s)	113
MroXI	GAANNNNTTC	1 cut(s)	510
MscI	TGGCCA	1 cut(s)	113
MslI	CAYNNNNRTG	3 cut(s)	107, 147, 495
Msp20I	TGGCCA	1 cut(s)	113
MspI	CCGG	4 cut(s)	32, 168, 183, 351
MspR9I	CCNGG	4 cut(s)	32, 168, 270, 582
MvaI	CCWGG	2 cut(s)	270, 582
MwoI	GCNNNNNNNGC	4 cut(s)	129, 313, 351, 360
NciI	CCSGG	2 cut(s)	32, 168
NcoI	CCATGG	2 cut(s)	319, 490
NdeII	GATC	3 cut(s)	259, 463, 564
NlaIII	CATG	9 cut(s)	56, 164, 203, 233, 238, 323, 494, 500, 556
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	526
NspI	RCATGY	2 cut(s)	164, 238
OliI	CACNNNNGTG	2 cut(s)	107, 147
PdmI	GAANNNNTTC	1 cut(s)	510
PkrI	GCNGC	6 cut(s)	39, 154, 211, 315, 356, 471
PleI	GAGTC	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	533
Psp6I	CCWGG	2 cut(s)	268, 580
PspGI	CCWGG	2 cut(s)	268, 580
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	487
RsaI	GTAC	2 cut(s)	23, 275
RsaNI	GTAC	2 cut(s)	22, 274
RseI	CAYNNNNRTG	3 cut(s)	107, 147, 495
SatI	GCNGC	6 cut(s)	38, 153, 210, 314, 355, 470
Sau3AI	GATC	3 cut(s)	259, 463, 564
Sau96I	GGNCC	1 cut(s)	487
SchI	GAGTC	1 cut(s)	534
ScrFI	CCNGG	4 cut(s)	32, 168, 270, 582
SetI	ASST	9 cut(s)	42, 84, 102, 157, 359, 365, 371, 377, 397
SfaNI	GCATC	1 cut(s)	310
SmiMI	CAYNNNNRTG	3 cut(s)	107, 147, 495
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	1 cut(s)	9
SsiI	CCGC	3 cut(s)	123, 158, 343
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	4 cut(s)	30, 166, 268, 580
StyI	CCWWGG	2 cut(s)	319, 490
TaaI	ACNGT	1 cut(s)	278
TasI	AATT	1 cut(s)	9
TscAI	CASTG	2 cut(s)	139, 151
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	6 cut(s)	37, 152, 209, 313, 354, 469
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	1 cut(s)	513
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	2 cut(s)	139, 151
XceI	RCATGY	2 cut(s)	164, 238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	510
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.