Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014045

Physical Location & Seq

Genomic Coordinates Forward (+)

21995417 .. 21996269

Gene Structure 853 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23852

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCTGAAATTCGCGACGAGTTCGGCAACCCCATCCCGCTCACCGACCAGTATGGCAACCCAGTTCAGCTGACAGACGAGCAAGGCCGCCCCATGCACCTCACTGGTATCGCCACCACCGAGGGCGGCCAAAGCCAAGCCATCCGTACTGGAGAGCAGCAGACCGGTATAGGAACCAGAGGCATCGGTACACACGTCCCTGGCACCGGTCTCCACGTTCCGGGCACGGGCACACACGTTCCAGGCACCGGTGCCCACATCCCCGGGACTGGCATACACATCCCCGGCACAGGTTCTCATGTTCCGGGGACAGGTGCACATGTTCCGGGCACCGGTGAGCACATGCCAGGAACCGGAGCCGGTAGCCACCCGTCAGGTACGGGGAAGACCGGTGGTGTTGCTGGAGTGAAGGCTGACGAAGTTATCACCGAGCATGCCGTGCATGGTACTGGAAAACCCAAAACTGTAGGTGAACATCTACAACAGGAGCGCCACACCGGTGAGGCCGGTGAACACCGTCGCAGCTCGAGCTCGAGCTCTAGTTCTTCGGAGGAGGATGATGGGAAAGGAGGGAGGATCAGGAAGAAGAAGGGACTGAAGGAGAAGATAAAGGAAACCTTTAGCGGTAAACATAAGGATGAGCATCTGGAGGGGGGGCCGGCCTTCAAGACCCCCACGACGACTCCTCAGGAGCATGAGAAGAAAGGCATGATGGAGAAGATCAAGGAGAAGTTACCTGGTCACCATCCCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

251

Amino Acids

26.08

Weight (kDa)

7.09

Isoelectric Point (pI)

29.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	22 - 249	3.5e-30	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0014045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21490 AT4G39130
fragaria_vesca	FvH4_2g09610
malus_domestica	MD10G1069000.v1.1
prunus_persica	Prupe.8G091000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0265971
rosa_laevigata	RLG00000014143
rosa_multiflora	Rmu_co8443205.1_g000001 Rmu_sc0013338.1_g000002
rosa_roxburghii	Rroxscaffold_7G00202180
rosa_rugosa	Rorug06G0021900
rosa_samantha	Rh6AG143200 Rh6BG143500 Rh6CG140100 Rh6DG127800
rosa_wichuraiana	Rw0G015570 Rw6G012380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	203, 245, 251, 329
AccBSI	CCGCTC	1 cut(s)	40
AccII	CGCG	1 cut(s)	15
AciI	CCGC	4 cut(s)	38, 88, 126, 624
AclWI	GGATC	1 cut(s)	584
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	617
AfaI	GTAC	4 cut(s)	148, 190, 379, 448
AfiI	CCNNNNNNNGG	9 cut(s)	206, 220, 227, 248, 269, 290, 311, 332, 353
AflIII	ACRYGT	3 cut(s)	193, 235, 319
AgeI	ACCGGT	6 cut(s)	164, 206, 248, 332, 389, 497
AgsI	TTSAA	1 cut(s)	667
AjiI	CACGTC	1 cut(s)	196
AjnI	CCWGG	4 cut(s)	199, 241, 346, 736
AleI	CACNNNNGTG	1 cut(s)	498
AluBI	AGCT	4 cut(s)	70, 525, 531, 537
AluI	AGCT	4 cut(s)	70, 525, 531, 537
Alw21I	GWGCWC	4 cut(s)	319, 342, 533, 539
Alw26I	GTCTC	1 cut(s)	215
Alw44I	GTGCAC	1 cut(s)	315
AlwI	GGATC	1 cut(s)	584
Ama87I	CYCGRG	3 cut(s)	263, 526, 532
AoxI	GGCC	5 cut(s)	85, 127, 504, 656, 660
ApaLI	GTGCAC	1 cut(s)	315
ApeKI	GCWGC	2 cut(s)	157, 522
ApoI	RAATTY	1 cut(s)	9
AsiGI	ACCGGT	6 cut(s)	164, 206, 248, 332, 389, 497
AspLEI	GCGC	1 cut(s)	492
AspS9I	GGNCC	1 cut(s)	656
AsuC2I	CCSGG	6 cut(s)	222, 264, 265, 285, 306, 327
AsuHPI	GGTGA	7 cut(s)	34, 347, 418, 482, 512, 521, 734
AvaI	CYCGRG	3 cut(s)	263, 526, 532
AxyI	CCTNAGG	1 cut(s)	687
BaeGI	GKGCMC	5 cut(s)	227, 233, 256, 319, 332
BaeI	ACNNNNGTAYC	2 cut(s)	180, 213
BanI	GGYRCC	4 cut(s)	203, 245, 251, 329
BanII	GRGCYC	2 cut(s)	533, 539
BbsI	GAAGAC	1 cut(s)	392
Bbv12I	GWGCWC	4 cut(s)	319, 342, 533, 539
BbvI	GCAGC	2 cut(s)	169, 534
BccI	CCATC	5 cut(s)	41, 149, 554, 706, 753
BceAI	ACGGC	1 cut(s)	422
BciT130I	CCWGG	4 cut(s)	201, 243, 348, 738
BcnI	CCSGG	6 cut(s)	222, 264, 265, 285, 306, 327
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	1 cut(s)	540
BfmI	CTRYAG	1 cut(s)	465
BfoI	RGCGCY	1 cut(s)	493
BisI	GCNGC	4 cut(s)	88, 127, 158, 523
BlsI	GCNGC	4 cut(s)	89, 128, 159, 524
BmeT110I	CYCGRG	3 cut(s)	263, 526, 532
BmgBI	CACGTC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	656
BmiI	GGNNCC	8 cut(s)	175, 205, 247, 253, 331, 352, 358, 657
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	2 cut(s)	192, 652
BmuI	ACTGGG	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	392
BpmI	CTGGAG	3 cut(s)	171, 423, 668
BpuMI	CCSGG	6 cut(s)	222, 264, 265, 285, 306, 327
BsaBI	GATNNNNATC	1 cut(s)	642
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	6 cut(s)	120, 199, 262, 263, 283, 305
BsaWI	WCCGGW	7 cut(s)	164, 206, 248, 332, 353, 389, 497
BsaXI	ACNNNNNCTCC	2 cut(s)	667, 697
Bsc4I	CCNNNNNNNGG	9 cut(s)	206, 220, 227, 248, 269, 290, 311, 332, 353
Bse118I	RCCGGY	9 cut(s)	164, 206, 248, 332, 359, 389, 497, 506, 658
Bse1I	ACTGG	6 cut(s)	49, 62, 109, 154, 274, 454
Bse21I	CCTNAGG	1 cut(s)	687
Bse8I	GATNNNNATC	1 cut(s)	642
BseBI	CCWGG	4 cut(s)	201, 243, 348, 738
BseDI	CCNNGG	6 cut(s)	120, 199, 262, 263, 283, 305
BseGI	GGATG	7 cut(s)	33, 141, 258, 279, 562, 643, 745
BseJI	GATNNNNATC	1 cut(s)	642
BseLI	CCNNNNNNNGG	9 cut(s)	206, 220, 227, 248, 269, 290, 311, 332, 353
BseMII	CTCAG	1 cut(s)	701
BseNI	ACTGG	6 cut(s)	49, 62, 109, 154, 274, 454
BseRI	GAGGAG	2 cut(s)	566, 675
BseSI	GKGCMC	5 cut(s)	227, 233, 256, 319, 332
BseXI	GCAGC	2 cut(s)	169, 534
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	5 cut(s)	87, 129, 506, 658, 662
BshNI	GGYRCC	4 cut(s)	203, 245, 251, 329
BshTI	ACCGGT	6 cut(s)	164, 206, 248, 332, 389, 497
BsiHKAI	GWGCWC	4 cut(s)	319, 342, 533, 539
BsiHKCI	CYCGRG	3 cut(s)	263, 526, 532
BslFI	GGGAC	4 cut(s)	182, 280, 322, 606
BslI	CCNNNNNNNGG	9 cut(s)	206, 220, 227, 248, 269, 290, 311, 332, 353
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	4 cut(s)	182, 280, 322, 606
BsnI	GGCC	5 cut(s)	87, 129, 506, 658, 662
Bso31I	GGTCTC	1 cut(s)	215
BsoBI	CYCGRG	3 cut(s)	263, 526, 532
Bsp1286I	GDGCHC	8 cut(s)	227, 233, 256, 319, 332, 342, 533, 539
Bsp143I	GATC	2 cut(s)	576, 720
Bsp68I	TCGCGA	1 cut(s)	15
BspACI	CCGC	4 cut(s)	38, 88, 126, 624
BspANI	GGCC	5 cut(s)	87, 129, 506, 658, 662
BspCNI	CTCAG	1 cut(s)	700
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	8 cut(s)	175, 205, 247, 253, 331, 352, 358, 657
BspPI	GGATC	1 cut(s)	584
BspT107I	GGYRCC	4 cut(s)	203, 245, 251, 329
BspTNI	GGTCTC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	40
BsrFI	RCCGGY	9 cut(s)	164, 206, 248, 332, 359, 389, 497, 506, 658
BsrI	ACTGG	6 cut(s)	49, 62, 109, 154, 274, 454
BssAI	RCCGGY	9 cut(s)	164, 206, 248, 332, 359, 389, 497, 506, 658
BssECI	CCNNGG	6 cut(s)	120, 199, 262, 263, 283, 305
BssMI	GATC	2 cut(s)	576, 720
Bst2UI	CCWGG	4 cut(s)	201, 243, 348, 738
Bst4CI	ACNGT	2 cut(s)	466, 518
BstAPI	GCANNNNNTGC	1 cut(s)	439
BstC8I	GCNNGC	2 cut(s)	435, 660
BstDEI	CTNAG	1 cut(s)	687
BstEII	GGTNACC	1 cut(s)	740
BstF5I	GGATG	7 cut(s)	33, 141, 258, 279, 562, 643, 745
BstFNI	CGCG	1 cut(s)	15
BstH2I	RGCGCY	1 cut(s)	493
BstHHI	GCGC	1 cut(s)	492
BstKTI	GATC	2 cut(s)	579, 723
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	2 cut(s)	576, 720
BstMWI	GCNNNNNNNGC	3 cut(s)	132, 439, 528
BstNI	CCWGG	4 cut(s)	201, 243, 348, 738
BstNSI	RCATGY	3 cut(s)	323, 346, 437
BstPI	GGTNACC	1 cut(s)	740
BstSFI	CTRYAG	1 cut(s)	465
BstSLI	GKGCMC	5 cut(s)	227, 233, 256, 319, 332
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	2 cut(s)	169, 534
BstV2I	GAAGAC	1 cut(s)	392
Bsu36I	CCTNAGG	1 cut(s)	687
BsuRI	GGCC	5 cut(s)	87, 129, 506, 658, 662
BtrI	CACGTC	1 cut(s)	196
BtsCI	GGATG	7 cut(s)	33, 141, 258, 279, 562, 643, 745
BtsIMutI	CAGTG	2 cut(s)	102, 751
BtuMI	TCGCGA	1 cut(s)	15
Cac8I	GCNNGC	2 cut(s)	435, 660
CfoI	GCGC	1 cut(s)	492
Cfr10I	RCCGGY	9 cut(s)	164, 206, 248, 332, 359, 389, 497, 506, 658
Cfr13I	GGNCC	1 cut(s)	656
Cfr9I	CCCGGG	1 cut(s)	263
CsiI	ACCWGGT	1 cut(s)	736
Csp6I	GTAC	4 cut(s)	147, 189, 378, 447
CspAI	ACCGGT	6 cut(s)	164, 206, 248, 332, 389, 497
CviAII	CATG	8 cut(s)	94, 299, 320, 343, 434, 443, 695, 709
CviQI	GTAC	4 cut(s)	147, 189, 378, 447
DdeI	CTNAG	1 cut(s)	687
DpnI	GATC	2 cut(s)	578, 722
DpnII	GATC	2 cut(s)	576, 720
EaeI	YGGCCR	1 cut(s)	127
Ecl136II	GAGCTC	2 cut(s)	531, 537
Eco24I	GRGCYC	2 cut(s)	533, 539
Eco31I	GGTCTC	1 cut(s)	215
Eco53kI	GAGCTC	2 cut(s)	531, 537
Eco57I	CTGAAG	1 cut(s)	617
Eco81I	CCTNAGG	1 cut(s)	687
Eco88I	CYCGRG	3 cut(s)	263, 526, 532
Eco91I	GGTNACC	1 cut(s)	740
EcoICRI	GAGCTC	2 cut(s)	531, 537
EcoO65I	GGTNACC	1 cut(s)	740
EcoRII	CCWGG	4 cut(s)	199, 241, 346, 736
EcoT38I	GRGCYC	2 cut(s)	533, 539
FaeI	CATG	8 cut(s)	97, 302, 323, 346, 437, 446, 698, 712
FalI	AAGNNNNNCTT	2 cut(s)	602, 634
FaqI	GGGAC	4 cut(s)	182, 280, 322, 606
FatI	CATG	8 cut(s)	93, 298, 319, 342, 433, 442, 694, 708
FauI	CCCGC	1 cut(s)	45
Fnu4HI	GCNGC	4 cut(s)	88, 127, 158, 523
FokI	GGATG	7 cut(s)	20, 128, 245, 266, 569, 650, 732
FriOI	GRGCYC	2 cut(s)	533, 539
FseI	GGCCGGCC	1 cut(s)	662
Fsp4HI	GCNGC	4 cut(s)	88, 127, 158, 523
FspBI	CTAG	1 cut(s)	540
GlaI	GCGC	1 cut(s)	491
GluI	GCNGC	4 cut(s)	88, 127, 158, 523
GsuI	CTGGAG	3 cut(s)	171, 423, 668
HaeII	RGCGCY	1 cut(s)	493
HaeIII	GGCC	5 cut(s)	87, 129, 506, 658, 662
HhaI	GCGC	1 cut(s)	492
Hin1II	CATG	8 cut(s)	97, 302, 323, 346, 437, 446, 698, 712
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HinfI	GANTC	1 cut(s)	682
HphI	GGTGA	7 cut(s)	34, 347, 418, 482, 512, 521, 734
Hpy166II	GTNNAC	5 cut(s)	191, 317, 473, 512, 629
Hpy188I	TCNGA	1 cut(s)	550
Hpy188III	TCNNGA	5 cut(s)	14, 580, 647, 667, 689
Hpy8I	GTNNAC	5 cut(s)	191, 317, 473, 512, 629
Hpy99I	CGWCG	3 cut(s)	20, 522, 682
HpyAV	CCTTC	4 cut(s)	403, 583, 592, 673
HpyCH4III	ACNGT	2 cut(s)	466, 518
HpyCH4IV	ACGT	3 cut(s)	195, 216, 237
HpyCH4V	TGCA	3 cut(s)	97, 317, 442
HpyF10VI	GCNNNNNNNGC	3 cut(s)	132, 439, 528
HpyF3I	CTNAG	1 cut(s)	687
HpySE526I	ACGT	3 cut(s)	195, 216, 237
Hsp92II	CATG	8 cut(s)	97, 302, 323, 346, 437, 446, 698, 712
HspAI	GCGC	1 cut(s)	490
KroI	GCCGGC	1 cut(s)	658
KroNI	GCCGGC	1 cut(s)	660
Kzo9I	GATC	2 cut(s)	576, 720
LmnI	GCTCC	3 cut(s)	356, 487, 691
Lsp1109I	GCAGC	2 cut(s)	169, 534
LweI	GCATC	2 cut(s)	192, 652
MabI	ACCWGGT	1 cut(s)	736
MaeI	CTAG	1 cut(s)	540
MaeII	ACGT	3 cut(s)	195, 216, 237
MaeIII	GTNAC	2 cut(s)	732, 740
MalI	GATC	2 cut(s)	578, 722
MbiI	CCGCTC	1 cut(s)	40
MboI	GATC	2 cut(s)	576, 720
MboII	GAAGA	7 cut(s)	397, 537, 595, 598, 616, 712, 730
MhlI	GDGCHC	8 cut(s)	227, 233, 256, 319, 332, 342, 533, 539
MluCI	AATT	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	676
MroNI	GCCGGC	1 cut(s)	658
MslI	CAYNNNNRTG	2 cut(s)	498, 636
MspA1I	CMGCKG	1 cut(s)	70
MvaI	CCWGG	4 cut(s)	201, 243, 348, 738
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	3 cut(s)	132, 439, 528
NaeI	GCCGGC	1 cut(s)	660
NciI	CCSGG	6 cut(s)	222, 264, 265, 285, 306, 327
NdeII	GATC	2 cut(s)	576, 720
NgoMIV	GCCGGC	1 cut(s)	658
NlaIII	CATG	8 cut(s)	97, 302, 323, 346, 437, 446, 698, 712
NlaIV	GGNNCC	8 cut(s)	175, 205, 247, 253, 331, 352, 358, 657
NmuCI	GTSAC	1 cut(s)	740
NruI	TCGCGA	1 cut(s)	15
NspI	RCATGY	3 cut(s)	323, 346, 437
OliI	CACNNNNGTG	1 cut(s)	498
PaeI	GCATGC	1 cut(s)	437
PaeR7I	CTCGAG	2 cut(s)	526, 532
PciI	ACATGT	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 192
PdiI	GCCGGC	1 cut(s)	660
PinAI	ACCGGT	6 cut(s)	164, 206, 248, 332, 389, 497
PkrI	GCNGC	4 cut(s)	89, 128, 159, 524
PleI	GAGTC	1 cut(s)	676
PpsI	GAGTC	1 cut(s)	676
PscI	ACATGT	1 cut(s)	319
Psp124BI	GAGCTC	2 cut(s)	533, 539
Psp6I	CCWGG	4 cut(s)	199, 241, 346, 736
PspEI	GGTNACC	1 cut(s)	740
PspGI	CCWGG	4 cut(s)	199, 241, 346, 736
PspN4I	GGNNCC	8 cut(s)	175, 205, 247, 253, 331, 352, 358, 657
PspPI	GGNCC	1 cut(s)	656
PspXI	VCTCGAGB	2 cut(s)	526, 532
PvuII	CAGCTG	1 cut(s)	70
RigI	GGCCGGCC	1 cut(s)	662
RruI	TCGCGA	1 cut(s)	15
RsaI	GTAC	4 cut(s)	148, 190, 379, 448
RsaNI	GTAC	4 cut(s)	147, 189, 378, 447
RseI	CAYNNNNRTG	2 cut(s)	498, 636
SacI	GAGCTC	2 cut(s)	533, 539
SatI	GCNGC	4 cut(s)	88, 127, 158, 523
Sau3AI	GATC	2 cut(s)	576, 720
Sau96I	GGNCC	1 cut(s)	656
SchI	GAGTC	1 cut(s)	676
SduI	GDGCHC	8 cut(s)	227, 233, 256, 319, 332, 342, 533, 539
SexAI	ACCWGGT	1 cut(s)	736
SfaNI	GCATC	2 cut(s)	192, 652
SfcI	CTRYAG	1 cut(s)	465
Sfr274I	CTCGAG	2 cut(s)	526, 532
SgrAI	CRCCGGYG	3 cut(s)	248, 332, 497
SlaI	CTCGAG	2 cut(s)	526, 532
SmaI	CCCGGG	1 cut(s)	265
SmiMI	CAYNNNNRTG	2 cut(s)	498, 636
SmlI	CTYRAG	2 cut(s)	526, 532
SmoI	CTYRAG	2 cut(s)	526, 532
SphI	GCATGC	1 cut(s)	437
Sse9I	AATT	1 cut(s)	9
SsiI	CCGC	4 cut(s)	38, 88, 126, 624
SspMI	CTAG	1 cut(s)	540
SstI	GAGCTC	2 cut(s)	533, 539
TaaI	ACNGT	2 cut(s)	466, 518
TaiI	ACGT	3 cut(s)	198, 219, 240
TaqI	TCGA	2 cut(s)	527, 533
TasI	AATT	1 cut(s)	9
TauI	GCSGC	2 cut(s)	90, 129
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	740
TseI	GCWGC	2 cut(s)	157, 522
Tsp45I	GTSAC	1 cut(s)	740
TspGWI	ACGGA	1 cut(s)	134
TspMI	CCCGGG	1 cut(s)	263
TspRI	CASTG	1 cut(s)	109
VneI	GTGCAC	1 cut(s)	315
XapI	RAATTY	1 cut(s)	9
XceI	RCATGY	3 cut(s)	323, 346, 437
XhoI	CTCGAG	2 cut(s)	526, 532
XmaI	CCCGGG	1 cut(s)	263
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.