Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00716

Orthogroup ID

OG0014045

Physical Location & Seq

Genomic Coordinates Reverse (-)

42194 .. 43037

Gene Structure 844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G015570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCTGAAATTCGAGACGAGTTCGGCAACCCCATCCCGCTCACCGACCAGTATGGCAACCCAGTTCAGCTGACAGACGAGCAAGGCCGCCCCATGCACCTCACTGGTATCGTCACCACCGAGGGCGGCCAAAGCCAAGCCATCCGTACTGGAGCAGCAGACCGGTATCGGAAAGAGGCATCGGTAACACACGTCCCTGGCACCGGTCTCCACGTTCCGGGCACGGGCACACACGTTCCGGGCACCGGTGCCCACATCCCCGGGACCGGCATACACATCCCCGGCACAGGTTCTCATGTTCCGGGGACAGGTGCACATGTTCCGGGCACCAGTGAGCACATGCCAGGAACCGGAGCCGGTATCCACCCGTCAGGTACGGGGACGACCGGTGGTGAGGATGATGGGAAAGGAGGGAGGATCAGGAAGAAGAAGGGACTGAAGGAGAAGATAAAGGAAACCTTTAGCGGTAAACATAAGGATGAGCATCCGGAGGGGGGGCCGGCCTTCAAGACCCCCACGATGACTCCTCAGGAGCATGAGAAGAAAGGCATGATGGAGAAGATCAAGGAGAAGTTACCTGGTCACCATCCCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

198

Amino Acids

20.75

Weight (kDa)

8.07

Isoelectric Point (pI)

19.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	22 - 196	9.7e-29	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21490 AT4G39130
fragaria_vesca	FvH4_2g09610
malus_domestica	MD10G1069000.v1.1
prunus_persica	Prupe.8G091000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0265971
rosa_laevigata	RLG00000014143
rosa_multiflora	Rmu_co8443205.1_g000001 Rmu_sc0013338.1_g000002
rosa_roxburghii	Rroxscaffold_7G00202180
rosa_rugosa	Rorug06G0021900
rosa_samantha	Rh6AG143200 Rh6BG143500 Rh6CG140100 Rh6DG127800
rosa_wichuraiana	Rw0G015570 Rw6G012380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	200, 242, 248, 326
AccBSI	CCGCTC	1 cut(s)	40
AccIII	TCCGGA	1 cut(s)	487
AciI	CCGC	4 cut(s)	38, 88, 126, 465
AclWI	GGATC	1 cut(s)	425
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	458
AfaI	GTAC	2 cut(s)	148, 376
AfiI	CCNNNNNNNGG	9 cut(s)	203, 217, 224, 245, 266, 287, 308, 350, 494
AflIII	ACRYGT	3 cut(s)	190, 232, 316
AgeI	ACCGGT	4 cut(s)	162, 203, 245, 386
AgsI	TTSAA	1 cut(s)	508
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	3 cut(s)	196, 343, 577
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw21I	GWGCWC	2 cut(s)	316, 339
Alw26I	GTCTC	2 cut(s)	9, 212
Alw44I	GTGCAC	1 cut(s)	312
AlwI	GGATC	1 cut(s)	425
Ama87I	CYCGRG	1 cut(s)	260
Aor13HI	TCCGGA	1 cut(s)	487
AoxI	GGCC	4 cut(s)	85, 127, 497, 501
ApaLI	GTGCAC	1 cut(s)	312
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	9
AsiGI	ACCGGT	4 cut(s)	162, 203, 245, 386
AspS9I	GGNCC	2 cut(s)	264, 497
AsuC2I	CCSGG	7 cut(s)	219, 240, 261, 262, 282, 303, 324
AsuHPI	GGTGA	4 cut(s)	34, 106, 404, 575
AvaI	CYCGRG	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	264
AxyI	CCTNAGG	1 cut(s)	528
BaeGI	GKGCMC	6 cut(s)	224, 230, 245, 253, 316, 329
BanI	GGYRCC	4 cut(s)	200, 242, 248, 326
Bbv12I	GWGCWC	2 cut(s)	316, 339
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	5 cut(s)	41, 149, 395, 547, 594
BciT130I	CCWGG	3 cut(s)	198, 345, 579
BciVI	GTATCC	1 cut(s)	371
BcnI	CCSGG	7 cut(s)	219, 240, 261, 262, 282, 303, 324
BcoDI	GTCTC	2 cut(s)	9, 212
BfuI	GTATCC	1 cut(s)	371
BisI	GCNGC	3 cut(s)	88, 127, 156
BlsI	GCNGC	3 cut(s)	89, 128, 157
Bme18I	GGWCC	1 cut(s)	264
BmeT110I	CYCGRG	1 cut(s)	260
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	264, 497
BmiI	GGNNCC	8 cut(s)	202, 244, 250, 265, 328, 349, 355, 498
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	2 cut(s)	188, 493
BmuI	ACTGGG	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	171
BpuMI	CCSGG	7 cut(s)	219, 240, 261, 262, 282, 303, 324
BsaBI	GATNNNNATC	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	6 cut(s)	120, 196, 259, 260, 280, 302
BsaWI	WCCGGW	6 cut(s)	162, 203, 245, 350, 386, 487
BsaXI	ACNNNNNCTCC	2 cut(s)	508, 538
Bsc4I	CCNNNNNNNGG	9 cut(s)	203, 217, 224, 245, 266, 287, 308, 350, 494
Bse118I	RCCGGY	7 cut(s)	162, 203, 245, 266, 356, 386, 499
Bse1I	ACTGG	5 cut(s)	49, 62, 109, 154, 330
Bse21I	CCTNAGG	1 cut(s)	528
Bse8I	GATNNNNATC	1 cut(s)	483
BseAI	TCCGGA	1 cut(s)	487
BseBI	CCWGG	3 cut(s)	198, 345, 579
BseDI	CCNNGG	6 cut(s)	120, 196, 259, 260, 280, 302
BseGI	GGATG	8 cut(s)	33, 141, 255, 276, 403, 484, 484, 586
BseJI	GATNNNNATC	1 cut(s)	483
BseLI	CCNNNNNNNGG	9 cut(s)	203, 217, 224, 245, 266, 287, 308, 350, 494
BseMII	CTCAG	1 cut(s)	542
BseNI	ACTGG	5 cut(s)	49, 62, 109, 154, 330
BseRI	GAGGAG	1 cut(s)	516
BseSI	GKGCMC	6 cut(s)	224, 230, 245, 253, 316, 329
BseXI	GCAGC	1 cut(s)	167
Bsh1285I	CGRYCG	1 cut(s)	387
BshFI	GGCC	4 cut(s)	87, 129, 499, 503
BshNI	GGYRCC	4 cut(s)	200, 242, 248, 326
BshTI	ACCGGT	4 cut(s)	162, 203, 245, 386
BsiEI	CGRYCG	1 cut(s)	387
BsiHKAI	GWGCWC	2 cut(s)	316, 339
BsiHKCI	CYCGRG	1 cut(s)	260
BslFI	GGGAC	5 cut(s)	179, 277, 319, 394, 447
BslI	CCNNNNNNNGG	9 cut(s)	203, 217, 224, 245, 266, 287, 308, 350, 494
BsmAI	GTCTC	2 cut(s)	9, 212
BsmBI	CGTCTC	1 cut(s)	9
BsmFI	GGGAC	5 cut(s)	179, 277, 319, 394, 447
BsnI	GGCC	4 cut(s)	87, 129, 499, 503
Bso31I	GGTCTC	1 cut(s)	212
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	7 cut(s)	224, 230, 245, 253, 316, 329, 339
Bsp13I	TCCGGA	1 cut(s)	487
Bsp143I	GATC	2 cut(s)	417, 561
BspACI	CCGC	4 cut(s)	38, 88, 126, 465
BspANI	GGCC	4 cut(s)	87, 129, 499, 503
BspCNI	CTCAG	1 cut(s)	541
BspEI	TCCGGA	1 cut(s)	487
BspLI	GGNNCC	8 cut(s)	202, 244, 250, 265, 328, 349, 355, 498
BspPI	GGATC	1 cut(s)	425
BspT107I	GGYRCC	4 cut(s)	200, 242, 248, 326
BspTNI	GGTCTC	1 cut(s)	212
BsrBI	CCGCTC	1 cut(s)	40
BsrFI	RCCGGY	7 cut(s)	162, 203, 245, 266, 356, 386, 499
BsrI	ACTGG	5 cut(s)	49, 62, 109, 154, 330
BssAI	RCCGGY	7 cut(s)	162, 203, 245, 266, 356, 386, 499
BssECI	CCNNGG	6 cut(s)	120, 196, 259, 260, 280, 302
BssMI	GATC	2 cut(s)	417, 561
Bst2UI	CCWGG	3 cut(s)	198, 345, 579
BstC8I	GCNNGC	1 cut(s)	501
BstDEI	CTNAG	1 cut(s)	528
BstEII	GGTNACC	1 cut(s)	581
BstF5I	GGATG	8 cut(s)	33, 141, 255, 276, 403, 484, 484, 586
BstKTI	GATC	2 cut(s)	420, 564
BstMAI	GTCTC	2 cut(s)	9, 212
BstMBI	GATC	2 cut(s)	417, 561
BstMCI	CGRYCG	1 cut(s)	387
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNI	CCWGG	3 cut(s)	198, 345, 579
BstNSI	RCATGY	2 cut(s)	320, 343
BstPI	GGTNACC	1 cut(s)	581
BstSLI	GKGCMC	6 cut(s)	224, 230, 245, 253, 316, 329
BstV1I	GCAGC	1 cut(s)	167
Bsu36I	CCTNAGG	1 cut(s)	528
BsuI	GTATCC	1 cut(s)	371
BsuRI	GGCC	4 cut(s)	87, 129, 499, 503
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	8 cut(s)	33, 141, 255, 276, 403, 484, 484, 586
BtsIMutI	CAGTG	3 cut(s)	102, 337, 592
Cac8I	GCNNGC	1 cut(s)	501
Cfr10I	RCCGGY	7 cut(s)	162, 203, 245, 266, 356, 386, 499
Cfr13I	GGNCC	2 cut(s)	264, 497
Cfr9I	CCCGGG	1 cut(s)	260
CsiI	ACCWGGT	1 cut(s)	577
Csp6I	GTAC	2 cut(s)	147, 375
CspAI	ACCGGT	4 cut(s)	162, 203, 245, 386
CviAII	CATG	6 cut(s)	94, 296, 317, 340, 536, 550
CviJI	RGCY	9 cut(s)	5, 70, 87, 129, 135, 140, 356, 499, 503
CviKI_1	RGCY	9 cut(s)	5, 70, 87, 129, 135, 140, 356, 499, 503
CviQI	GTAC	2 cut(s)	147, 375
DdeI	CTNAG	1 cut(s)	528
DpnI	GATC	2 cut(s)	419, 563
DpnII	GATC	2 cut(s)	417, 561
EaeI	YGGCCR	1 cut(s)	127
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	458
Eco81I	CCTNAGG	1 cut(s)	528
Eco88I	CYCGRG	1 cut(s)	260
Eco91I	GGTNACC	1 cut(s)	581
EcoO65I	GGTNACC	1 cut(s)	581
EcoRII	CCWGG	3 cut(s)	196, 343, 577
Esp3I	CGTCTC	1 cut(s)	9
FaeI	CATG	6 cut(s)	97, 299, 320, 343, 539, 553
FaiI	YATR	9 cut(s)	54, 95, 272, 297, 318, 341, 474, 537, 551
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FaqI	GGGAC	5 cut(s)	179, 277, 319, 394, 447
FatI	CATG	6 cut(s)	93, 295, 316, 339, 535, 549
FauI	CCCGC	1 cut(s)	45
Fnu4HI	GCNGC	3 cut(s)	88, 127, 156
FokI	GGATG	8 cut(s)	20, 128, 242, 263, 410, 471, 491, 573
FseI	GGCCGGCC	1 cut(s)	503
Fsp4HI	GCNGC	3 cut(s)	88, 127, 156
GluI	GCNGC	3 cut(s)	88, 127, 156
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	4 cut(s)	87, 129, 499, 503
Hin1II	CATG	6 cut(s)	97, 299, 320, 343, 539, 553
HinfI	GANTC	1 cut(s)	523
HphI	GGTGA	4 cut(s)	34, 106, 404, 575
Hpy166II	GTNNAC	2 cut(s)	314, 470
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	5 cut(s)	14, 421, 488, 508, 530
Hpy8I	GTNNAC	2 cut(s)	314, 470
HpyAV	CCTTC	3 cut(s)	424, 433, 514
HpyCH4IV	ACGT	3 cut(s)	192, 213, 234
HpyCH4V	TGCA	2 cut(s)	97, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	1 cut(s)	528
HpySE526I	ACGT	3 cut(s)	192, 213, 234
Hsp92II	CATG	6 cut(s)	97, 299, 320, 343, 539, 553
Kpn2I	TCCGGA	1 cut(s)	487
KroI	GCCGGC	1 cut(s)	499
KroNI	GCCGGC	1 cut(s)	501
Kzo9I	GATC	2 cut(s)	417, 561
LmnI	GCTCC	3 cut(s)	152, 353, 532
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	2 cut(s)	188, 493
MabI	ACCWGGT	1 cut(s)	577
MaeII	ACGT	3 cut(s)	192, 213, 234
MaeIII	GTNAC	4 cut(s)	112, 184, 573, 581
MalI	GATC	2 cut(s)	419, 563
MbiI	CCGCTC	1 cut(s)	40
MboI	GATC	2 cut(s)	417, 561
MboII	GAAGA	5 cut(s)	436, 439, 457, 553, 571
MhlI	GDGCHC	7 cut(s)	224, 230, 245, 253, 316, 329, 339
MluCI	AATT	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	517
MnlI	CCTC	8 cut(s)	110, 115, 169, 388, 404, 408, 484, 537
MroI	TCCGGA	1 cut(s)	487
MroNI	GCCGGC	1 cut(s)	499
MslI	CAYNNNNRTG	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	70
MvaI	CCWGG	3 cut(s)	198, 345, 579
MwoI	GCNNNNNNNGC	1 cut(s)	132
NaeI	GCCGGC	1 cut(s)	501
NciI	CCSGG	7 cut(s)	219, 240, 261, 262, 282, 303, 324
NdeII	GATC	2 cut(s)	417, 561
NgoMIV	GCCGGC	1 cut(s)	499
NlaIII	CATG	6 cut(s)	97, 299, 320, 343, 539, 553
NlaIV	GGNNCC	8 cut(s)	202, 244, 250, 265, 328, 349, 355, 498
NmuCI	GTSAC	2 cut(s)	112, 581
NspI	RCATGY	2 cut(s)	320, 343
PciI	ACATGT	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PdiI	GCCGGC	1 cut(s)	501
PinAI	ACCGGT	4 cut(s)	162, 203, 245, 386
PkrI	GCNGC	3 cut(s)	89, 128, 157
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
PscI	ACATGT	1 cut(s)	316
Psp6I	CCWGG	3 cut(s)	196, 343, 577
PspEI	GGTNACC	1 cut(s)	581
PspGI	CCWGG	3 cut(s)	196, 343, 577
PspN4I	GGNNCC	8 cut(s)	202, 244, 250, 265, 328, 349, 355, 498
PspPI	GGNCC	2 cut(s)	264, 497
PvuII	CAGCTG	1 cut(s)	70
RigI	GGCCGGCC	1 cut(s)	503
RsaI	GTAC	2 cut(s)	148, 376
RsaNI	GTAC	2 cut(s)	147, 375
RseI	CAYNNNNRTG	1 cut(s)	477
SatI	GCNGC	3 cut(s)	88, 127, 156
Sau3AI	GATC	2 cut(s)	417, 561
Sau96I	GGNCC	2 cut(s)	264, 497
SchI	GAGTC	1 cut(s)	517
SduI	GDGCHC	7 cut(s)	224, 230, 245, 253, 316, 329, 339
SexAI	ACCWGGT	1 cut(s)	577
SfaNI	GCATC	2 cut(s)	188, 493
SgrAI	CRCCGGYG	1 cut(s)	245
SinI	GGWCC	1 cut(s)	264
SmaI	CCCGGG	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	477
Sse9I	AATT	1 cut(s)	9
SsiI	CCGC	4 cut(s)	38, 88, 126, 465
TaiI	ACGT	3 cut(s)	195, 216, 237
TaqI	TCGA	1 cut(s)	13
TasI	AATT	1 cut(s)	9
TauI	GCSGC	2 cut(s)	90, 129
TscAI	CASTG	2 cut(s)	109, 337
TseFI	GTSAC	2 cut(s)	112, 581
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	2 cut(s)	112, 581
TspGWI	ACGGA	1 cut(s)	134
TspMI	CCCGGG	1 cut(s)	260
TspRI	CASTG	2 cut(s)	109, 337
VneI	GTGCAC	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	264
XapI	RAATTY	1 cut(s)	9
XceI	RCATGY	2 cut(s)	320, 343
XmaI	CCCGGG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.