Rroxscaffold_7G00202180

Belongs to the plant dehydrin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0014045
Physical Location & Seq
Reverse (-)
50119212 .. 50120010
799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00202180.1

Sequence Viewer

Length: 702 bp
ATGGCTGAAATTCGCGACGAGTTCGGCAACCCCATCCCGCTCACTGACCAGTATGGCAACCCAGTTCAGCTGACAGACGAGCAAGGCCGCCCCATGCACCTCACTGGTATCGCCACCACCGAGGGCGGCCAAAGCCAAGCCATCCATACTGGTGAGCAGCAGACCGGTATCGGAACCAGAGGCATCGGTACACACGTCCCTGGCACCGGTCTCCACGTTCCGGGCACGGGCACACACGTTCCGGGCACCGGTGCCCACATCCCCGGGACTGGCATACACATCCCCGGCACAGGTTCTCATGTTCCGGAGACAGGTACACATGTTCCGGGCATCGGTGAGCACATGCCAGGAACCGGAGCCGGTAGCCACCCGTCAGGTAAGGGGACGACAGGTGGTGTTGCTGGAGTGAAGGCTGACGAAGTTATCACCGAGCATGCCGTGCATGGTACTGGAAAACCCGAAACTGTAGGTGAACATCTACAACAGGAGCGCCACACCGGTGAGGCCGGTGAACACCATCGCAGCTCGAGCTCTAGTTCTTCGGAGGAGGATGATGGGAAAGGAGGGAGGATCAGGAAGAAGAAGGGACTGAAGGAGAAGATAAAGGAAACCTTTAGCGGTAAACATAAGGATGGGCATCCGGAGGGGGGTCGGCCTTCAAGACCCCCACGACGACTCAGGAGCATGAGAAGAAAGGCATGA

Protein Analysis

233

Amino Acids

24.23

Weight (kDa)

8.15

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dehydrin PF00257 22 - 213 5.1e-16 Dehydrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21490 AT4G39130
fragaria_vesca FvH4_2g09610
malus_domestica MD10G1069000.v1.1
prunus_persica Prupe.8G091000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0265971
rosa_laevigata RLG00000014143
rosa_multiflora Rmu_co8443205.1_g000001 Rmu_sc0013338.1_g000002
rosa_roxburghii Rroxscaffold_7G00202180
rosa_rugosa Rorug06G0021900
rosa_samantha Rh6AG143200 Rh6BG143500 Rh6CG140100 Rh6DG127800
rosa_wichuraiana Rw0G015570 Rw6G012380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 203, 245, 251
AccBSI CCGCTC 1 cut(s) 40
AccII CGCG 1 cut(s) 15
AccIII TCCGGA 2 cut(s) 304, 640
AciI CCGC 4 cut(s) 38, 88, 126, 618
AclWI GGATC 1 cut(s) 578
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 1 cut(s) 611
AfaI GTAC 3 cut(s) 190, 316, 448
AflIII ACRYGT 3 cut(s) 193, 235, 319
AgeI ACCGGT 4 cut(s) 164, 206, 248, 497
AgsI TTSAA 1 cut(s) 660
AjiI CACGTC 1 cut(s) 196
AjnI CCWGG 2 cut(s) 199, 346
AleI CACNNNNGTG 1 cut(s) 498
AluBI AGCT 3 cut(s) 70, 525, 531
AluI AGCT 3 cut(s) 70, 525, 531
Alw21I GWGCWC 2 cut(s) 342, 533
Alw26I GTCTC 2 cut(s) 215, 302
AlwI GGATC 1 cut(s) 578
Ama87I CYCGRG 2 cut(s) 263, 526
Aor13HI TCCGGA 2 cut(s) 304, 640
AoxI GGCC 4 cut(s) 85, 127, 504, 653
ApeKI GCWGC 2 cut(s) 157, 522
ApoI RAATTY 1 cut(s) 9
AsiGI ACCGGT 4 cut(s) 164, 206, 248, 497
AspLEI GCGC 1 cut(s) 492
AsuC2I CCSGG 6 cut(s) 222, 243, 264, 265, 285, 327
AsuHPI GGTGA 6 cut(s) 164, 347, 418, 482, 512, 521
AvaI CYCGRG 2 cut(s) 263, 526
BaeGI GKGCMC 4 cut(s) 227, 233, 248, 256
BaeI ACNNNNGTAYC 4 cut(s) 180, 213, 306, 339
BanI GGYRCC 3 cut(s) 203, 245, 251
BanII GRGCYC 1 cut(s) 533
Bbv12I GWGCWC 2 cut(s) 342, 533
BbvI GCAGC 2 cut(s) 169, 534
BccI CCATC 5 cut(s) 41, 149, 525, 548, 626
BceAI ACGGC 1 cut(s) 422
BciT130I CCWGG 2 cut(s) 201, 348
BcnI CCSGG 6 cut(s) 222, 243, 264, 265, 285, 327
BcoDI GTCTC 2 cut(s) 215, 302
BfaI CTAG 1 cut(s) 534
BfmI CTRYAG 1 cut(s) 465
BfoI RGCGCY 1 cut(s) 493
BisI GCNGC 4 cut(s) 88, 127, 158, 523
BlsI GCNGC 4 cut(s) 89, 128, 159, 524
Bme1390I CCNGG 8 cut(s) 201, 222, 243, 264, 265, 285, 327, 348
BmeT110I CYCGRG 2 cut(s) 263, 526
BmgBI CACGTC 1 cut(s) 196
BmiI GGNNCC 6 cut(s) 175, 205, 247, 253, 352, 358
BmrFI CCNGG 8 cut(s) 201, 222, 243, 264, 265, 285, 327, 348
BmrI ACTGGG 1 cut(s) 56
BmsI GCATC 3 cut(s) 192, 339, 646
BmuI ACTGGG 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 423
BpuMI CCSGG 6 cut(s) 222, 243, 264, 265, 285, 327
BsaBI GATNNNNATC 1 cut(s) 636
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 5 cut(s) 120, 199, 262, 263, 283
BsaWI WCCGGW 7 cut(s) 164, 206, 248, 304, 353, 497, 640
Bse118I RCCGGY 6 cut(s) 164, 206, 248, 359, 497, 506
Bse1I ACTGG 6 cut(s) 49, 62, 109, 154, 274, 454
Bse8I GATNNNNATC 1 cut(s) 636
BseAI TCCGGA 2 cut(s) 304, 640
BseBI CCWGG 2 cut(s) 201, 348
BseDI CCNNGG 5 cut(s) 120, 199, 262, 263, 283
BseGI GGATG 7 cut(s) 33, 141, 258, 279, 556, 637, 637
BseJI GATNNNNATC 1 cut(s) 636
BseMII CTCAG 1 cut(s) 691
BseNI ACTGG 6 cut(s) 49, 62, 109, 154, 274, 454
BseRI GAGGAG 1 cut(s) 560
BseSI GKGCMC 4 cut(s) 227, 233, 248, 256
BseXI GCAGC 2 cut(s) 169, 534
Bsh1236I CGCG 1 cut(s) 15
BshFI GGCC 4 cut(s) 87, 129, 506, 655
BshNI GGYRCC 3 cut(s) 203, 245, 251
BshTI ACCGGT 4 cut(s) 164, 206, 248, 497
BsiHKAI GWGCWC 2 cut(s) 342, 533
BsiHKCI CYCGRG 2 cut(s) 263, 526
BslFI GGGAC 4 cut(s) 182, 280, 397, 600
BsmAI GTCTC 2 cut(s) 215, 302
BsmFI GGGAC 4 cut(s) 182, 280, 397, 600
BsnI GGCC 4 cut(s) 87, 129, 506, 655
Bso31I GGTCTC 1 cut(s) 215
BsoBI CYCGRG 2 cut(s) 263, 526
Bsp1286I GDGCHC 6 cut(s) 227, 233, 248, 256, 342, 533
Bsp13I TCCGGA 2 cut(s) 304, 640
Bsp143I GATC 1 cut(s) 570
Bsp68I TCGCGA 1 cut(s) 15
BspACI CCGC 4 cut(s) 38, 88, 126, 618
BspANI GGCC 4 cut(s) 87, 129, 506, 655
BspCNI CTCAG 1 cut(s) 690
BspEI TCCGGA 2 cut(s) 304, 640
BspFNI CGCG 1 cut(s) 15
BspLI GGNNCC 6 cut(s) 175, 205, 247, 253, 352, 358
BspPI GGATC 1 cut(s) 578
BspT107I GGYRCC 3 cut(s) 203, 245, 251
BspTNI GGTCTC 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 40
BsrFI RCCGGY 6 cut(s) 164, 206, 248, 359, 497, 506
BsrI ACTGG 6 cut(s) 49, 62, 109, 154, 274, 454
BssAI RCCGGY 6 cut(s) 164, 206, 248, 359, 497, 506
BssECI CCNNGG 5 cut(s) 120, 199, 262, 263, 283
BssMI GATC 1 cut(s) 570
Bst2UI CCWGG 2 cut(s) 201, 348
Bst4CI ACNGT 1 cut(s) 466
BstAPI GCANNNNNTGC 1 cut(s) 439
BstC8I GCNNGC 1 cut(s) 435
BstDEI CTNAG 1 cut(s) 677
BstF5I GGATG 7 cut(s) 33, 141, 258, 279, 556, 637, 637
BstFNI CGCG 1 cut(s) 15
BstH2I RGCGCY 1 cut(s) 493
BstHHI GCGC 1 cut(s) 492
BstKTI GATC 1 cut(s) 573
BstMAI GTCTC 2 cut(s) 215, 302
BstMBI GATC 1 cut(s) 570
BstMWI GCNNNNNNNGC 3 cut(s) 132, 439, 528
BstNI CCWGG 2 cut(s) 201, 348
BstNSI RCATGY 3 cut(s) 323, 346, 437
BstSCI CCNGG 8 cut(s) 199, 220, 241, 262, 263, 283, 325, 346
BstSFI CTRYAG 1 cut(s) 465
BstSLI GKGCMC 4 cut(s) 227, 233, 248, 256
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 2 cut(s) 169, 534
BsuRI GGCC 4 cut(s) 87, 129, 506, 655
BtgZI GCGATG 1 cut(s) 503
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 7 cut(s) 33, 141, 258, 279, 556, 637, 637
BtsIMutI CAGTG 2 cut(s) 42, 102
BtuMI TCGCGA 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 435
CfoI GCGC 1 cut(s) 492
Cfr10I RCCGGY 6 cut(s) 164, 206, 248, 359, 497, 506
Cfr9I CCCGGG 1 cut(s) 263
Csp6I GTAC 3 cut(s) 189, 315, 447
CspAI ACCGGT 4 cut(s) 164, 206, 248, 497
CviAII CATG 8 cut(s) 94, 299, 320, 343, 434, 443, 685, 699
CviQI GTAC 3 cut(s) 189, 315, 447
DdeI CTNAG 1 cut(s) 677
DpnI GATC 1 cut(s) 572
DpnII GATC 1 cut(s) 570
EaeI YGGCCR 1 cut(s) 127
Ecl136II GAGCTC 1 cut(s) 531
Eco24I GRGCYC 1 cut(s) 533
Eco31I GGTCTC 1 cut(s) 215
Eco53kI GAGCTC 1 cut(s) 531
Eco57I CTGAAG 1 cut(s) 611
Eco88I CYCGRG 2 cut(s) 263, 526
EcoICRI GAGCTC 1 cut(s) 531
EcoRII CCWGG 2 cut(s) 199, 346
EcoT38I GRGCYC 1 cut(s) 533
FaeI CATG 8 cut(s) 97, 302, 323, 346, 437, 446, 688, 702
FalI AAGNNNNNCTT 2 cut(s) 596, 628
FaqI GGGAC 4 cut(s) 182, 280, 397, 600
FatI CATG 8 cut(s) 93, 298, 319, 342, 433, 442, 684, 698
FauI CCCGC 1 cut(s) 45
Fnu4HI GCNGC 4 cut(s) 88, 127, 158, 523
FokI GGATG 7 cut(s) 20, 128, 245, 266, 563, 624, 644
FriOI GRGCYC 1 cut(s) 533
Fsp4HI GCNGC 4 cut(s) 88, 127, 158, 523
FspBI CTAG 1 cut(s) 534
GlaI GCGC 1 cut(s) 491
GluI GCNGC 4 cut(s) 88, 127, 158, 523
GsuI CTGGAG 1 cut(s) 423
HaeII RGCGCY 1 cut(s) 493
HaeIII GGCC 4 cut(s) 87, 129, 506, 655
HhaI GCGC 1 cut(s) 492
Hin1II CATG 8 cut(s) 97, 302, 323, 346, 437, 446, 688, 702
Hin6I GCGC 1 cut(s) 490
HinP1I GCGC 1 cut(s) 490
HinfI GANTC 1 cut(s) 675
HphI GGTGA 6 cut(s) 164, 347, 418, 482, 512, 521
Hpy166II GTNNAC 5 cut(s) 191, 317, 473, 512, 623
Hpy188I TCNGA 2 cut(s) 173, 544
Hpy188III TCNNGA 6 cut(s) 14, 305, 574, 641, 660, 679
Hpy8I GTNNAC 5 cut(s) 191, 317, 473, 512, 623
Hpy99I CGWCG 2 cut(s) 20, 675
HpyAV CCTTC 4 cut(s) 403, 577, 586, 666
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4IV ACGT 3 cut(s) 195, 216, 237
HpyCH4V TGCA 2 cut(s) 97, 442
HpyF10VI GCNNNNNNNGC 3 cut(s) 132, 439, 528
HpyF3I CTNAG 1 cut(s) 677
HpySE526I ACGT 3 cut(s) 195, 216, 237
Hsp92II CATG 8 cut(s) 97, 302, 323, 346, 437, 446, 688, 702
HspAI GCGC 1 cut(s) 490
Kpn2I TCCGGA 2 cut(s) 304, 640
Kzo9I GATC 1 cut(s) 570
LmnI GCTCC 3 cut(s) 356, 487, 681
Lsp1109I GCAGC 2 cut(s) 169, 534
LweI GCATC 3 cut(s) 192, 339, 646
MaeI CTAG 1 cut(s) 534
MaeII ACGT 3 cut(s) 195, 216, 237
MalI GATC 1 cut(s) 572
MbiI CCGCTC 1 cut(s) 40
MboI GATC 1 cut(s) 570
MboII GAAGA 5 cut(s) 531, 589, 592, 610, 702
MhlI GDGCHC 6 cut(s) 227, 233, 248, 256, 342, 533
MluCI AATT 1 cut(s) 9
MlyI GAGTC 1 cut(s) 669
MnlI CCTC 9 cut(s) 110, 115, 173, 496, 538, 541, 557, 561, 637
MroI TCCGGA 2 cut(s) 304, 640
MslI CAYNNNNRTG 3 cut(s) 150, 498, 630
MspA1I CMGCKG 1 cut(s) 70
MspR9I CCNGG 8 cut(s) 201, 222, 243, 264, 265, 285, 327, 348
MvaI CCWGG 2 cut(s) 201, 348
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 3 cut(s) 132, 439, 528
NciI CCSGG 6 cut(s) 222, 243, 264, 265, 285, 327
NdeII GATC 1 cut(s) 570
NlaIII CATG 8 cut(s) 97, 302, 323, 346, 437, 446, 688, 702
NlaIV GGNNCC 6 cut(s) 175, 205, 247, 253, 352, 358
NruI TCGCGA 1 cut(s) 15
NspI RCATGY 3 cut(s) 323, 346, 437
OliI CACNNNNGTG 1 cut(s) 498
PaeI GCATGC 1 cut(s) 437
PaeR7I CTCGAG 1 cut(s) 526
PciI ACATGT 1 cut(s) 319
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 192
PinAI ACCGGT 4 cut(s) 164, 206, 248, 497
PkrI GCNGC 4 cut(s) 89, 128, 159, 524
PleI GAGTC 1 cut(s) 669
PpsI GAGTC 1 cut(s) 669
PscI ACATGT 1 cut(s) 319
Psp124BI GAGCTC 1 cut(s) 533
Psp6I CCWGG 2 cut(s) 199, 346
PspGI CCWGG 2 cut(s) 199, 346
PspN4I GGNNCC 6 cut(s) 175, 205, 247, 253, 352, 358
PspXI VCTCGAGB 1 cut(s) 526
PvuII CAGCTG 1 cut(s) 70
RruI TCGCGA 1 cut(s) 15
RsaI GTAC 3 cut(s) 190, 316, 448
RsaNI GTAC 3 cut(s) 189, 315, 447
RseI CAYNNNNRTG 3 cut(s) 150, 498, 630
SacI GAGCTC 1 cut(s) 533
SatI GCNGC 4 cut(s) 88, 127, 158, 523
Sau3AI GATC 1 cut(s) 570
SchI GAGTC 1 cut(s) 669
ScrFI CCNGG 8 cut(s) 201, 222, 243, 264, 265, 285, 327, 348
SduI GDGCHC 6 cut(s) 227, 233, 248, 256, 342, 533
SfaNI GCATC 3 cut(s) 192, 339, 646
SfcI CTRYAG 1 cut(s) 465
Sfr274I CTCGAG 1 cut(s) 526
SgrAI CRCCGGYG 2 cut(s) 248, 497
SlaI CTCGAG 1 cut(s) 526
SmaI CCCGGG 1 cut(s) 265
SmiMI CAYNNNNRTG 3 cut(s) 150, 498, 630
SmlI CTYRAG 1 cut(s) 526
SmoI CTYRAG 1 cut(s) 526
SphI GCATGC 1 cut(s) 437
Sse9I AATT 1 cut(s) 9
SsiI CCGC 4 cut(s) 38, 88, 126, 618
SspMI CTAG 1 cut(s) 534
SstI GAGCTC 1 cut(s) 533
StyD4I CCNGG 8 cut(s) 199, 220, 241, 262, 263, 283, 325, 346
TaaI ACNGT 1 cut(s) 466
TaiI ACGT 3 cut(s) 198, 219, 240
TaqI TCGA 1 cut(s) 527
TasI AATT 1 cut(s) 9
TauI GCSGC 2 cut(s) 90, 129
TscAI CASTG 2 cut(s) 49, 109
TseI GCWGC 2 cut(s) 157, 522
TspMI CCCGGG 1 cut(s) 263
TspRI CASTG 2 cut(s) 49, 109
XapI RAATTY 1 cut(s) 9
XceI RCATGY 3 cut(s) 323, 346, 437
XhoI CTCGAG 1 cut(s) 526
XmaI CCCGGG 1 cut(s) 263
XspI CTAG 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.