Rorug06G0021900

Belongs to the plant dehydrin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0014045
Physical Location & Seq
Forward (+)
2742381 .. 2744003
1623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0021900.1

Sequence Viewer

Length: 624 bp
ATGTTTATTCTTGACGATAATCAGCAGTCCACAACTATATGTGATGCTTATAATCTTCAGAAGTCAGGCTACAATTTAGATTTGTTGGGTGCAGAGAAGATTGTGCCGGAAGACAATGATGCTGACACTGATATGGCATGTGGTGGACTGCAGGATGAATCTGCAGTTGCAGTGACGTGCTCACCATCATCTGACATCTCTGATGACTCTGTAATTGGTAGCGTTCATAGAAGAAGACCGCAGTTGGAAGATGCAAATAGTGTTGTTAGTGTTCTCACTGTTGTTGATTCATTTAAACTGCAATCTTTAAATAAGCCTTTGTTGAGAAGCATGCTAAAAGGACGCAATTTGATTGTGGTTAAAAAATACATTCAAAGGTTGATTGCCTTTGTGTTCAATGTTATTATGCATCTGCAGAGTTCACTAATCTTCTATGAGAGATTCGCTCAGAGTAAAGATGATAGTGATCCATATCCAGGAACAGTCATTCTTATGTTTGTTGACGTACTGGCAAGAATTTCTGGCAAGCATGCAGTATACAAAATGGATATCTGGCATGTAGCGCACTCGTTACGTATACCGTCAGCACTTTTTTCAAGATTTCTATCTGTTAAAACATTCTAA

Protein Analysis

207

Amino Acids

23.13

Weight (kDa)

5.92

Isoelectric Point (pI)

58.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21490 AT4G39130
fragaria_vesca FvH4_2g09610
malus_domestica MD10G1069000.v1.1
prunus_persica Prupe.8G091000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0265971
rosa_laevigata RLG00000014143
rosa_multiflora Rmu_co8443205.1_g000001 Rmu_sc0013338.1_g000002
rosa_roxburghii Rroxscaffold_7G00202180
rosa_rugosa Rorug06G0021900
rosa_samantha Rh6AG143200 Rh6BG143500 Rh6CG140100 Rh6DG127800
rosa_wichuraiana Rw0G015570 Rw6G012380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 51
AccI GTMKAC 2 cut(s) 537, 577
AciI CCGC 1 cut(s) 239
AclWI GGATC 1 cut(s) 461
AcsI RAATTY 1 cut(s) 516
AcuI CTGAAG 1 cut(s) 41
AfaI GTAC 1 cut(s) 507
AfiI CCNNNNNNNGG 1 cut(s) 476
AgsI TTSAA 3 cut(s) 374, 397, 597
AjiI CACGTC 1 cut(s) 177
AjnI CCWGG 1 cut(s) 475
Alw21I GWGCWC 1 cut(s) 182
AlwI GGATC 1 cut(s) 461
ApoI RAATTY 1 cut(s) 516
AspLEI GCGC 1 cut(s) 565
AsuHPI GGTGA 1 cut(s) 174
BarI GAAGNNNNNNTAC 2 cut(s) 53, 85
BbsI GAAGAC 2 cut(s) 117, 241
Bbv12I GWGCWC 1 cut(s) 182
BccI CCATC 1 cut(s) 193
BciT130I CCWGG 1 cut(s) 477
BfmI CTRYAG 3 cut(s) 149, 162, 413
Bme1390I CCNGG 1 cut(s) 477
BmgBI CACGTC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 477
BmsI GCATC 4 cut(s) 34, 109, 241, 418
BpiI GAAGAC 2 cut(s) 117, 241
BplI GAGNNNNNCTC 2 cut(s) 430, 462
BsaAI YACGTR 1 cut(s) 575
BsaBI GATNNNNATC 3 cut(s) 465, 471, 604
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse1I ACTGG 1 cut(s) 513
Bse8I GATNNNNATC 3 cut(s) 465, 471, 604
BseBI CCWGG 1 cut(s) 477
BseGI GGATG 1 cut(s) 160
BseJI GATNNNNATC 3 cut(s) 465, 471, 604
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMII CTCAG 1 cut(s) 461
BseNI ACTGG 1 cut(s) 513
BsgI GTGCAG 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 182
BsiSI CCGG 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 476
Bsp1286I GDGCHC 1 cut(s) 182
Bsp143I GATC 1 cut(s) 466
BspACI CCGC 1 cut(s) 239
BspCNI CTCAG 1 cut(s) 460
BspMAI CTGCAG 3 cut(s) 153, 166, 417
BspPI GGATC 1 cut(s) 461
BsrI ACTGG 1 cut(s) 513
BssMI GATC 1 cut(s) 466
BssNAI GTATAC 2 cut(s) 538, 578
Bst1107I GTATAC 2 cut(s) 538, 578
Bst2UI CCWGG 1 cut(s) 477
Bst4CI ACNGT 3 cut(s) 280, 484, 582
BstBAI YACGTR 1 cut(s) 575
BstC8I GCNNGC 3 cut(s) 332, 527, 531
BstDEI CTNAG 1 cut(s) 447
BstF5I GGATG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 565
BstKTI GATC 1 cut(s) 469
BstMBI GATC 1 cut(s) 466
BstMWI GCNNNNNNNGC 1 cut(s) 562
BstNI CCWGG 1 cut(s) 477
BstNSI RCATGY 4 cut(s) 141, 334, 533, 560
BstSCI CCNGG 1 cut(s) 475
BstSFI CTRYAG 3 cut(s) 149, 162, 413
BstSNI TACGTA 1 cut(s) 575
BstV2I GAAGAC 2 cut(s) 117, 241
BstZ17I GTATAC 2 cut(s) 538, 578
BtrI CACGTC 1 cut(s) 177
BtsCI GGATG 1 cut(s) 160
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 3 cut(s) 126, 177, 276
Cac8I GCNNGC 3 cut(s) 332, 527, 531
CfoI GCGC 1 cut(s) 565
CseI GACGC 1 cut(s) 351
Csp6I GTAC 1 cut(s) 506
CviAII CATG 4 cut(s) 138, 331, 530, 557
CviJI RGCY 2 cut(s) 69, 316
CviKI_1 RGCY 2 cut(s) 69, 316
CviQI GTAC 1 cut(s) 506
DdeI CTNAG 1 cut(s) 447
DpnI GATC 1 cut(s) 468
DpnII GATC 1 cut(s) 466
DraI TTTAAA 2 cut(s) 295, 309
Eco105I TACGTA 1 cut(s) 575
Eco32I GATATC 1 cut(s) 550
Eco57I CTGAAG 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 475
EcoRV GATATC 1 cut(s) 550
EcoT22I ATGCAT 1 cut(s) 411
FaeI CATG 4 cut(s) 141, 334, 533, 560
FatI CATG 4 cut(s) 137, 330, 529, 556
FblI GTMKAC 2 cut(s) 537, 577
FokI GGATG 1 cut(s) 167
GlaI GCGC 1 cut(s) 564
HapII CCGG 1 cut(s) 107
HgaI GACGC 1 cut(s) 351
HhaI GCGC 1 cut(s) 565
Hin1II CATG 4 cut(s) 141, 334, 533, 560
Hin6I GCGC 1 cut(s) 563
HinP1I GCGC 1 cut(s) 563
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HinfI GANTC 4 cut(s) 158, 206, 287, 441
HpaII CCGG 1 cut(s) 107
HphI GGTGA 1 cut(s) 174
Hpy166II GTNNAC 6 cut(s) 30, 146, 422, 502, 538, 578
Hpy188I TCNGA 4 cut(s) 60, 193, 202, 450
Hpy188III TCNNGA 2 cut(s) 11, 597
Hpy8I GTNNAC 6 cut(s) 30, 146, 422, 502, 538, 578
HpyCH4III ACNGT 3 cut(s) 280, 484, 582
HpyCH4IV ACGT 3 cut(s) 176, 504, 574
HpyCH4V TGCA 9 cut(s) 92, 151, 164, 170, 254, 301, 409, 415, 533
HpyF10VI GCNNNNNNNGC 1 cut(s) 562
HpyF3I CTNAG 1 cut(s) 447
HpySE526I ACGT 3 cut(s) 176, 504, 574
Hsp92II CATG 4 cut(s) 141, 334, 533, 560
HspAI GCGC 1 cut(s) 563
Kzo9I GATC 1 cut(s) 466
LpnPI CCDG 8 cut(s) 51, 120, 137, 462, 489, 494, 507, 538
LweI GCATC 4 cut(s) 34, 109, 241, 418
MaeII ACGT 3 cut(s) 176, 504, 574
MaeIII GTNAC 2 cut(s) 172, 570
MalI GATC 1 cut(s) 468
MboI GATC 1 cut(s) 466
MboII GAAGA 7 cut(s) 47, 109, 122, 243, 246, 260, 421
MhlI GDGCHC 1 cut(s) 182
MluCI AATT 4 cut(s) 73, 213, 346, 516
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 1 cut(s) 225
Mph1103I ATGCAT 1 cut(s) 411
MseI TTAA 4 cut(s) 294, 308, 360, 612
MslI CAYNNNNRTG 2 cut(s) 131, 491
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 477
MwoI GCNNNNNNNGC 1 cut(s) 562
NdeII GATC 1 cut(s) 466
NlaIII CATG 4 cut(s) 141, 334, 533, 560
NmuCI GTSAC 1 cut(s) 172
NsiI ATGCAT 1 cut(s) 411
NspI RCATGY 4 cut(s) 141, 334, 533, 560
PaeI GCATGC 2 cut(s) 334, 533
PfeI GAWTC 3 cut(s) 158, 287, 441
PfoI TCCNGGA 1 cut(s) 475
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
Ppu21I YACGTR 1 cut(s) 575
PsiI TTATAA 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 475
PspGI CCWGG 1 cut(s) 475
PstI CTGCAG 3 cut(s) 153, 166, 417
RsaI GTAC 1 cut(s) 507
RsaNI GTAC 1 cut(s) 506
RseI CAYNNNNRTG 2 cut(s) 131, 491
SaqAI TTAA 4 cut(s) 294, 308, 360, 612
Sau3AI GATC 1 cut(s) 466
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 477
SduI GDGCHC 1 cut(s) 182
SetI ASST 4 cut(s) 179, 380, 507, 577
SfaNI GCATC 4 cut(s) 34, 109, 241, 418
SfcI CTRYAG 3 cut(s) 149, 162, 413
SmiMI CAYNNNNRTG 2 cut(s) 131, 491
SnaBI TACGTA 1 cut(s) 575
SphI GCATGC 2 cut(s) 334, 533
Sse9I AATT 4 cut(s) 73, 213, 346, 516
SsiI CCGC 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 475
TaaI ACNGT 3 cut(s) 280, 484, 582
TaiI ACGT 3 cut(s) 179, 507, 577
TasI AATT 4 cut(s) 73, 213, 346, 516
TfiI GAWTC 3 cut(s) 158, 287, 441
Tru1I TTAA 4 cut(s) 294, 308, 360, 612
Tru9I TTAA 4 cut(s) 294, 308, 360, 612
TscAI CASTG 3 cut(s) 133, 177, 283
TseFI GTSAC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 3 cut(s) 171, 215, 279
TspRI CASTG 3 cut(s) 133, 177, 283
XapI RAATTY 1 cut(s) 516
XceI RCATGY 4 cut(s) 141, 334, 533, 560
XmiI GTMKAC 2 cut(s) 537, 577
Zsp2I ATGCAT 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.