Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0014045

Physical Location & Seq

Genomic Coordinates Forward (+)

8528965 .. 8530144

Gene Structure 1180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g09610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGTCTGAAATCCGAGACGAGTTCGGCAACCCCGTCCCGCTCACCGACCAGTATGGCAACCCAGTTCAATTGACAGACGAGCTAGGCCGCCCCATACACCTCTCTGGCATCGCCACCACCGAGGGCGCACAAGGCCAAGCCATCCGTACCGGAGAGCACCACACCGGTACACAAGGCTCTACAGGCACCGGTCTCCACATCCCTGGCACGGGGACACACGCTCCAGGCACCGGTGTTCATGTCCCCGGCACCGGCCAACACGTTCCGGGCACAGGTGCACACATTCCGGGGACGGGCATACATGTCCCGGGTACAGGTGAACATGTTCCGGGGACAGGTGCACATGTCCCGGGTACAGGTGCTCATGTTCCGGGCACTGGTGCTCACATGCCGGGAATGACTGCGGGTGATGGTGTTGGTCTGATGGCTGCCGTGCACGTAACCGATAAACCCAAAACTGTAGGTGAGCATCTTCACCAGGAACGCCACACCGGCGTGGCCGGTGAACACCGTCGCAGCTCTAGCTCTAGCTCTTCGGAGGAGGATGACGGGAAAGGAGGGAGGATTAGGAAGAAGAAGGGACTGAAGGAGAAGATAAAGGAAACCTTTGGAGGTAAGCACAAGGATGAGCATCCGCAGGCGGGGCCAACCTTCAAGACCCCAACGACTACTCCACAAGAGCATGAGAAGAAAGGCATGATGGAGAAGATCAAGGAGAAGTTGCCTGGTCACCATGCCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

248

Amino Acids

25.6

Weight (kDa)

7.14

Isoelectric Point (pI)

23.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	22 - 245	2.9e-30	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21490 AT4G39130
fragaria_vesca	FvH4_2g09610
malus_domestica	MD10G1069000.v1.1
prunus_persica	Prupe.8G091000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0265971
rosa_laevigata	RLG00000014143
rosa_multiflora	Rmu_co8443205.1_g000001 Rmu_sc0013338.1_g000002
rosa_roxburghii	Rroxscaffold_7G00202180
rosa_rugosa	Rorug06G0021900
rosa_samantha	Rh6AG143200 Rh6BG143500 Rh6CG140100 Rh6DG127800
rosa_wichuraiana	Rw0G015570 Rw6G012380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	185, 227, 248
AccBSI	CCGCTC	1 cut(s)	40
AciI	CCGC	5 cut(s)	38, 88, 404, 635, 641
AcoI	YGGCCR	2 cut(s)	253, 498
AcuI	CTGAAG	1 cut(s)	605
AfaI	GTAC	4 cut(s)	148, 169, 313, 355
AflIII	ACRYGT	4 cut(s)	259, 301, 322, 343
AgeI	ACCGGT	3 cut(s)	164, 188, 230
AgsI	TTSAA	2 cut(s)	68, 655
AjnI	CCWGG	4 cut(s)	202, 223, 477, 724
AleI	CACNNNNGTG	1 cut(s)	494
AluBI	AGCT	4 cut(s)	82, 519, 525, 531
AluI	AGCT	4 cut(s)	82, 519, 525, 531
Alw21I	GWGCWC	6 cut(s)	159, 280, 343, 364, 385, 438
Alw26I	GTCTC	2 cut(s)	9, 197
Alw44I	GTGCAC	3 cut(s)	276, 339, 434
Ama87I	CYCGRG	2 cut(s)	307, 349
AoxI	GGCC	5 cut(s)	85, 133, 253, 498, 644
ApaLI	GTGCAC	3 cut(s)	276, 339, 434
ApeKI	GCWGC	2 cut(s)	428, 516
AsiGI	ACCGGT	3 cut(s)	164, 188, 230
Asp700I	GAANNNNTTC	1 cut(s)	324
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	644
AsuHPI	GGTGA	7 cut(s)	34, 329, 419, 467, 476, 515, 722
AvaI	CYCGRG	2 cut(s)	307, 349
BaeGI	GKGCMC	5 cut(s)	272, 280, 343, 377, 438
BanI	GGYRCC	3 cut(s)	185, 227, 248
Bbv12I	GWGCWC	6 cut(s)	159, 280, 343, 364, 385, 438
BbvI	GCAGC	2 cut(s)	415, 528
BccI	CCATC	4 cut(s)	149, 404, 418, 694
BceAI	ACGGC	1 cut(s)	416
BciT130I	CCWGG	4 cut(s)	204, 225, 479, 726
BcoDI	GTCTC	2 cut(s)	9, 197
BfaI	CTAG	3 cut(s)	83, 522, 528
BfmI	CTRYAG	2 cut(s)	180, 459
BglI	GCCNNNNNGGC	1 cut(s)	492
BisI	GCNGC	3 cut(s)	88, 429, 517
BlsI	GCNGC	3 cut(s)	89, 430, 518
BmeT110I	CYCGRG	2 cut(s)	307, 349
BmgT120I	GGNCC	1 cut(s)	644
BmiI	GGNNCC	4 cut(s)	187, 229, 250, 645
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	3 cut(s)	117, 478, 640
BmuI	ACTGGG	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	207
BsaAI	YACGTR	1 cut(s)	439
BsaBI	GATNNNNATC	1 cut(s)	630
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	7 cut(s)	120, 202, 244, 287, 307, 329, 349
BsaWI	WCCGGW	4 cut(s)	149, 164, 188, 230
BsaXI	ACNNNNNCTCC	4 cut(s)	205, 235, 655, 685
Bse118I	RCCGGY	6 cut(s)	164, 188, 230, 251, 491, 500
Bse1I	ACTGG	3 cut(s)	49, 62, 382
Bse8I	GATNNNNATC	1 cut(s)	630
BseBI	CCWGG	4 cut(s)	204, 225, 479, 726
BseDI	CCNNGG	7 cut(s)	120, 202, 244, 287, 307, 329, 349
BseGI	GGATG	5 cut(s)	141, 198, 550, 631, 631
BseJI	GATNNNNATC	1 cut(s)	630
BseNI	ACTGG	3 cut(s)	49, 62, 382
BseRI	GAGGAG	1 cut(s)	554
BseSI	GKGCMC	5 cut(s)	272, 280, 343, 377, 438
BseXI	GCAGC	2 cut(s)	415, 528
BshFI	GGCC	5 cut(s)	87, 135, 255, 500, 646
BshNI	GGYRCC	3 cut(s)	185, 227, 248
BshTI	ACCGGT	3 cut(s)	164, 188, 230
BsiHKAI	GWGCWC	6 cut(s)	159, 280, 343, 364, 385, 438
BsiHKCI	CYCGRG	2 cut(s)	307, 349
BslFI	GGGAC	8 cut(s)	20, 226, 227, 290, 304, 332, 346, 594
BsmAI	GTCTC	2 cut(s)	9, 197
BsmBI	CGTCTC	1 cut(s)	9
BsmFI	GGGAC	8 cut(s)	20, 226, 227, 290, 304, 332, 346, 594
BsnI	GGCC	5 cut(s)	87, 135, 255, 500, 646
Bso31I	GGTCTC	1 cut(s)	197
BsoBI	CYCGRG	2 cut(s)	307, 349
Bsp1286I	GDGCHC	8 cut(s)	159, 272, 280, 343, 364, 377, 385, 438
Bsp143I	GATC	1 cut(s)	708
BspACI	CCGC	5 cut(s)	38, 88, 404, 635, 641
BspANI	GGCC	5 cut(s)	87, 135, 255, 500, 646
BspLI	GGNNCC	4 cut(s)	187, 229, 250, 645
BspQI	GCTCTTC	1 cut(s)	538
BspT107I	GGYRCC	3 cut(s)	185, 227, 248
BspTNI	GGTCTC	1 cut(s)	197
BsrBI	CCGCTC	1 cut(s)	40
BsrFI	RCCGGY	6 cut(s)	164, 188, 230, 251, 491, 500
BsrI	ACTGG	3 cut(s)	49, 62, 382
BssAI	RCCGGY	6 cut(s)	164, 188, 230, 251, 491, 500
BssECI	CCNNGG	7 cut(s)	120, 202, 244, 287, 307, 329, 349
BssMI	GATC	1 cut(s)	708
Bst2UI	CCWGG	4 cut(s)	204, 225, 479, 726
Bst4CI	ACNGT	2 cut(s)	460, 512
Bst6I	CTCTTC	1 cut(s)	538
BstBAI	YACGTR	1 cut(s)	439
BstC8I	GCNNGC	1 cut(s)	639
BstEII	GGTNACC	1 cut(s)	728
BstF5I	GGATG	5 cut(s)	141, 198, 550, 631, 631
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	1 cut(s)	711
BstMAI	GTCTC	2 cut(s)	9, 197
BstMBI	GATC	1 cut(s)	708
BstMWI	GCNNNNNNNGC	5 cut(s)	132, 183, 492, 522, 643
BstNI	CCWGG	4 cut(s)	204, 225, 479, 726
BstNSI	RCATGY	4 cut(s)	305, 326, 347, 391
BstPI	GGTNACC	1 cut(s)	728
BstSFI	CTRYAG	2 cut(s)	180, 459
BstSLI	GKGCMC	5 cut(s)	272, 280, 343, 377, 438
BstV1I	GCAGC	2 cut(s)	415, 528
BstXI	CCANNNNNNTGG	1 cut(s)	203
BsuRI	GGCC	5 cut(s)	87, 135, 255, 500, 646
BtgZI	GCGATG	1 cut(s)	94
BtsCI	GGATG	5 cut(s)	141, 198, 550, 631, 631
BtsIMutI	CAGTG	2 cut(s)	375, 739
Cac8I	GCNNGC	1 cut(s)	639
CfoI	GCGC	1 cut(s)	128
Cfr10I	RCCGGY	6 cut(s)	164, 188, 230, 251, 491, 500
Cfr13I	GGNCC	1 cut(s)	644
Cfr9I	CCCGGG	2 cut(s)	307, 349
Csp6I	GTAC	4 cut(s)	147, 168, 312, 354
CspAI	ACCGGT	3 cut(s)	164, 188, 230
CviAII	CATG	9 cut(s)	239, 302, 323, 344, 365, 388, 683, 697, 734
CviQI	GTAC	4 cut(s)	147, 168, 312, 354
DpnI	GATC	1 cut(s)	710
DpnII	GATC	1 cut(s)	708
EaeI	YGGCCR	2 cut(s)	253, 498
Eam1104I	CTCTTC	1 cut(s)	538
EarI	CTCTTC	1 cut(s)	538
Eco31I	GGTCTC	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	605
Eco88I	CYCGRG	2 cut(s)	307, 349
Eco91I	GGTNACC	1 cut(s)	728
EcoO65I	GGTNACC	1 cut(s)	728
EcoRII	CCWGG	4 cut(s)	202, 223, 477, 724
Esp3I	CGTCTC	1 cut(s)	9
FaeI	CATG	9 cut(s)	242, 305, 326, 347, 368, 391, 686, 700, 737
FalI	AAGNNNNNCTT	2 cut(s)	590, 622
FaqI	GGGAC	8 cut(s)	20, 226, 227, 290, 304, 332, 346, 594
FatI	CATG	9 cut(s)	238, 301, 322, 343, 364, 387, 682, 696, 733
FauI	CCCGC	3 cut(s)	45, 397, 634
Fnu4HI	GCNGC	3 cut(s)	88, 429, 517
FokI	GGATG	5 cut(s)	128, 185, 557, 618, 638
Fsp4HI	GCNGC	3 cut(s)	88, 429, 517
FspBI	CTAG	3 cut(s)	83, 522, 528
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	3 cut(s)	88, 429, 517
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	5 cut(s)	87, 135, 255, 500, 646
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	9 cut(s)	242, 305, 326, 347, 368, 391, 686, 700, 737
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HphI	GGTGA	7 cut(s)	34, 329, 419, 467, 476, 515, 722
Hpy166II	GTNNAC	6 cut(s)	170, 278, 320, 341, 436, 506
Hpy188I	TCNGA	4 cut(s)	7, 14, 423, 538
Hpy188III	TCNNGA	1 cut(s)	655
Hpy8I	GTNNAC	6 cut(s)	170, 278, 320, 341, 436, 506
Hpy99I	CGWCG	1 cut(s)	516
HpyAV	CCTTC	3 cut(s)	571, 580, 661
HpyCH4III	ACNGT	2 cut(s)	460, 512
HpyCH4IV	ACGT	2 cut(s)	261, 438
HpyCH4V	TGCA	3 cut(s)	278, 341, 436
HpyF10VI	GCNNNNNNNGC	5 cut(s)	132, 183, 492, 522, 643
HpySE526I	ACGT	2 cut(s)	261, 438
Hsp92II	CATG	9 cut(s)	242, 305, 326, 347, 368, 391, 686, 700, 737
HspAI	GCGC	1 cut(s)	126
Kzo9I	GATC	1 cut(s)	708
LguI	GCTCTTC	1 cut(s)	538
LmnI	GCTCC	1 cut(s)	226
Lsp1109I	GCAGC	2 cut(s)	415, 528
LweI	GCATC	3 cut(s)	117, 478, 640
MaeI	CTAG	3 cut(s)	83, 522, 528
MaeII	ACGT	2 cut(s)	261, 438
MaeIII	GTNAC	2 cut(s)	439, 728
MalI	GATC	1 cut(s)	710
MbiI	CCGCTC	1 cut(s)	40
MboI	GATC	1 cut(s)	708
MboII	GAAGA	7 cut(s)	464, 525, 583, 586, 604, 700, 718
MfeI	CAATTG	1 cut(s)	68
MhlI	GDGCHC	8 cut(s)	159, 272, 280, 343, 364, 377, 385, 438
MluCI	AATT	1 cut(s)	68
MnlI	CCTC	7 cut(s)	110, 115, 532, 535, 551, 555, 605
MroXI	GAANNNNTTC	1 cut(s)	324
MslI	CAYNNNNRTG	2 cut(s)	494, 624
MunI	CAATTG	1 cut(s)	68
MvaI	CCWGG	4 cut(s)	204, 225, 479, 726
MwoI	GCNNNNNNNGC	5 cut(s)	132, 183, 492, 522, 643
NdeII	GATC	1 cut(s)	708
NlaIII	CATG	9 cut(s)	242, 305, 326, 347, 368, 391, 686, 700, 737
NlaIV	GGNNCC	4 cut(s)	187, 229, 250, 645
NmuCI	GTSAC	1 cut(s)	728
NspI	RCATGY	4 cut(s)	305, 326, 347, 391
OliI	CACNNNNGTG	1 cut(s)	494
PciI	ACATGT	3 cut(s)	301, 322, 343
PciSI	GCTCTTC	1 cut(s)	538
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 117
PdmI	GAANNNNTTC	1 cut(s)	324
PinAI	ACCGGT	3 cut(s)	164, 188, 230
PkrI	GCNGC	3 cut(s)	89, 430, 518
Ppu21I	YACGTR	1 cut(s)	439
PscI	ACATGT	3 cut(s)	301, 322, 343
Psp6I	CCWGG	4 cut(s)	202, 223, 477, 724
PspEI	GGTNACC	1 cut(s)	728
PspGI	CCWGG	4 cut(s)	202, 223, 477, 724
PspN4I	GGNNCC	4 cut(s)	187, 229, 250, 645
PspPI	GGNCC	1 cut(s)	644
RsaI	GTAC	4 cut(s)	148, 169, 313, 355
RsaNI	GTAC	4 cut(s)	147, 168, 312, 354
RseI	CAYNNNNRTG	2 cut(s)	494, 624
SapI	GCTCTTC	1 cut(s)	538
SatI	GCNGC	3 cut(s)	88, 429, 517
Sau3AI	GATC	1 cut(s)	708
Sau96I	GGNCC	1 cut(s)	644
SduI	GDGCHC	8 cut(s)	159, 272, 280, 343, 364, 377, 385, 438
SfaNI	GCATC	3 cut(s)	117, 478, 640
SfcI	CTRYAG	2 cut(s)	180, 459
SgrAI	CRCCGGYG	2 cut(s)	230, 491
SmaI	CCCGGG	2 cut(s)	309, 351
SmiMI	CAYNNNNRTG	2 cut(s)	494, 624
Sse9I	AATT	1 cut(s)	68
SsiI	CCGC	5 cut(s)	38, 88, 404, 635, 641
SspMI	CTAG	3 cut(s)	83, 522, 528
TaaI	ACNGT	2 cut(s)	460, 512
TaiI	ACGT	2 cut(s)	264, 441
TasI	AATT	1 cut(s)	68
TauI	GCSGC	1 cut(s)	90
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	728
TseI	GCWGC	2 cut(s)	428, 516
Tsp45I	GTSAC	1 cut(s)	728
TspDTI	ATGAA	1 cut(s)	227
TspGWI	ACGGA	1 cut(s)	134
TspMI	CCCGGG	2 cut(s)	307, 349
TspRI	CASTG	1 cut(s)	382
VneI	GTGCAC	3 cut(s)	276, 339, 434
XceI	RCATGY	4 cut(s)	305, 326, 347, 391
XmaI	CCCGGG	2 cut(s)	307, 349
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	3 cut(s)	83, 522, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.