Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004315

Physical Location & Seq

Genomic Coordinates Forward (+)

9350543 .. 9353231

Gene Structure 2689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21940.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGAAGCAGCTATTACTCAGAGGATTCAGTACCCATCATGGGTTGATTGTAGAAAAGTTGAGTGTAAGCCGCAGCGTGGTTCATTGCGGTATTCTCAGCAGGTTAAGGTAGATAGAAGGTTTAGAGGTCTTTCTTTGGCTCGCTTGCAACCTGAAAGAAGAAATGATCAACGAAGAGCAGTTTCTCCAGCGGTTTCCTGTTCTGATAACAATTCCTCAGCGTTGTTGGAGACTGGAAGTGTTTATCCATTTGATGAAGATATTCTCAAGAGAAAAGCAGAAGAGGTTAAACCGTATTTGAATGGACGATCTATGTACCTTGTCGGAATGATGGGTTCTGGGAAAACAACTGTGGGAAAGTTAATGTCCAAAGTGCTCGGTTATACGTTCTTTGACTGCGACACTTTGATTGAACAGGCGATGAATGGAACTTCTGTTGCAGAGATATTTGTTCATCACGGAGAGAATTTTTTTAGAGGAAAGGAGACCGATGCGCTTAAGAAGCTCTCTTCGAGGTATCAAGTTGTTGTTTCCACAGGTGGAGGTGCAGTTATAAGACCCATTAACTGGAAGTATATGCATAAAGGAATCAGCATTTGGCTAGATGTGCCTCTAGAAGCATTAGCCCATAGAATCGCTGCTGTTGGAACTGATTCACGACCACTGCTACACGATGAATCAGGAGATGCATACTCAGTGGCTTTCAAACGTCTCTCGGCTATTTGGGACGAGCGCGGTGAAGCATACACAAACGCAAATGCCAGAGTCTCCTTAGAAAATATTGCAGCAAAGCGTGGCTATAAAAATGTCTCAGATCTCACACCAACTGAAATTGCTATCGAGGCCTTCGAGCAAGTTCTGAGCTTTCTAGAGAAAGAAGAAACTATGGAGATCCCAGACGGCGACCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0005488 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009987 GO:0016053 GO:0019438 GO:0019752 GO:0043167 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0046872 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

SKI

Protein Analysis

303

Amino Acids

33.98

Weight (kDa)

7.65

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_18	PF13238	107 - 217	2.6e-06	AAA domain
SKI	PF01202	111 - 267	1.3e-42	Shikimate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT4G39540 AT4G39540 AT4G39540
malus_domestica	MD01G1019500.v1.1 MD15G1332900.v1.1
prunus_persica	Prupe.6G172800_v2.0.a1 Prupe.6G172800_v2.0.a1
pyrus_communis	pycom01g04900 pycom15g29260
rosa_chinensis	RchiOBHm_Chr2g0116491 RchiOBHm_Chr2g0116501 RchiOBHm_Chr2g0116521 RchiOBHm_Chr6g0259311
rosa_laevigata	RLG00000018276 RLG00000018279
rosa_multiflora	Rmu_sc0004191.1_g000047 Rmu_sc0018630.1_g000001 Rmu_ssc0000050.1_g000062
rosa_roxburghii	Rroxscaffold_2G00127140 Rroxscaffold_2G00127150
rosa_rugosa	Rorug02G0207100 Rorug05G0587200
rosa_samantha	Rh2CG268700
rosa_wichuraiana	Rw2G020620 Rw2G020630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
Acc36I	ACCTGC	1 cut(s)	91
AccB7I	CCANNNNNTGG	1 cut(s)	567
AccII	CGCG	1 cut(s)	735
AciI	CCGC	4 cut(s)	71, 88, 191, 735
AclWI	GGATC	1 cut(s)	886
AcsI	RAATTY	1 cut(s)	466
AfaI	GTAC	2 cut(s)	32, 317
AfiI	CCNNNNNNNGG	3 cut(s)	40, 77, 567
AflII	CTTAAG	1 cut(s)	497
AgsI	TTSAA	3 cut(s)	301, 413, 706
AjuI	GAANNNNNNNTTGG	2 cut(s)	580, 612
AluBI	AGCT	3 cut(s)	11, 505, 864
AluI	AGCT	3 cut(s)	11, 505, 864
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	5 cut(s)	224, 479, 716, 772, 814
AlwI	GGATC	1 cut(s)	886
AoxI	GGCC	1 cut(s)	843
ApeKI	GCWGC	4 cut(s)	8, 73, 638, 785
ApoI	RAATTY	1 cut(s)	466
Asp700I	GAANNNNTTC	2 cut(s)	261, 652
AspLEI	GCGC	2 cut(s)	496, 735
AsuHPI	GGTGA	1 cut(s)	749
Bbv12I	GWGCWC	1 cut(s)	378
BbvCI	CCTCAGC	1 cut(s)	217
BbvI	GCAGC	4 cut(s)	20, 85, 625, 797
BccI	CCATC	2 cut(s)	43, 325
BclI	TGATCA	1 cut(s)	166
BcoDI	GTCTC	5 cut(s)	224, 479, 716, 772, 814
BfaI	CTAG	3 cut(s)	602, 614, 869
BfrI	CTTAAG	1 cut(s)	497
BfuAI	ACCTGC	1 cut(s)	91
BglII	AGATCT	1 cut(s)	814
BisI	GCNGC	5 cut(s)	9, 71, 74, 639, 786
BlsI	GCNGC	5 cut(s)	10, 72, 75, 640, 787
BmsI	GCATC	2 cut(s)	481, 676
BpmI	CTGGAG	1 cut(s)	171
Bpu10I	CCTNAGC	1 cut(s)	217
BpuEI	CTTGAG	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	479
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 77, 567
Bse1I	ACTGG	2 cut(s)	238, 572
Bse3DI	GCAATG	1 cut(s)	83
BseLI	CCNNNNNNNGG	3 cut(s)	40, 77, 567
BseMI	GCAATG	1 cut(s)	83
BseMII	CTCAG	6 cut(s)	32, 110, 231, 708, 825, 851
BseNI	ACTGG	2 cut(s)	238, 572
BseXI	GCAGC	4 cut(s)	20, 85, 625, 797
BsgI	GTGCAG	1 cut(s)	567
Bsh1236I	CGCG	1 cut(s)	735
BshFI	GGCC	1 cut(s)	845
BsiHKAI	GWGCWC	1 cut(s)	378
BslFI	GGGAC	1 cut(s)	740
BslI	CCNNNNNNNGG	3 cut(s)	40, 77, 567
BsmAI	GTCTC	5 cut(s)	224, 479, 716, 772, 814
BsmBI	CGTCTC	1 cut(s)	716
BsmFI	GGGAC	1 cut(s)	740
BsnI	GGCC	1 cut(s)	845
Bso31I	GGTCTC	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	4 cut(s)	166, 308, 814, 891
BspACI	CCGC	4 cut(s)	71, 88, 191, 735
BspANI	GGCC	1 cut(s)	845
BspCNI	CTCAG	6 cut(s)	31, 109, 230, 707, 824, 852
BspFNI	CGCG	1 cut(s)	735
BspMI	ACCTGC	1 cut(s)	91
BspPI	GGATC	1 cut(s)	886
BspQI	GCTCTTC	1 cut(s)	169
BspTI	CTTAAG	1 cut(s)	497
BspTNI	GGTCTC	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	238, 572
BssMI	GATC	4 cut(s)	166, 308, 814, 891
Bst4CI	ACNGT	2 cut(s)	294, 352
Bst6I	CTCTTC	3 cut(s)	169, 276, 514
BstAFI	CTTAAG	1 cut(s)	497
BstC8I	GCNNGC	2 cut(s)	142, 146
BstDEI	CTNAG	7 cut(s)	18, 96, 217, 694, 772, 811, 860
BstFNI	CGCG	1 cut(s)	735
BstHHI	GCGC	2 cut(s)	496, 735
BstKTI	GATC	4 cut(s)	169, 311, 817, 894
BstMAI	GTCTC	5 cut(s)	224, 479, 716, 772, 814
BstMBI	GATC	4 cut(s)	166, 308, 814, 891
BstMWI	GCNNNNNNNGC	3 cut(s)	502, 607, 842
BstUI	CGCG	1 cut(s)	735
BstV1I	GCAGC	4 cut(s)	20, 85, 625, 797
BstX2I	RGATCY	2 cut(s)	814, 891
BstYI	RGATCY	2 cut(s)	814, 891
BsuRI	GGCC	1 cut(s)	845
BtgZI	GCGATG	1 cut(s)	434
BtsI	GCAGTG	1 cut(s)	662
BtsIMutI	CAGTG	2 cut(s)	662, 702
BveI	ACCTGC	1 cut(s)	91
Cac8I	GCNNGC	2 cut(s)	142, 146
CfoI	GCGC	2 cut(s)	496, 735
Csp6I	GTAC	2 cut(s)	31, 316
CviAII	CATG	1 cut(s)	39
CviQI	GTAC	2 cut(s)	31, 316
DdeI	CTNAG	7 cut(s)	18, 96, 217, 694, 772, 811, 860
DpnI	GATC	4 cut(s)	168, 310, 816, 893
DpnII	GATC	4 cut(s)	166, 308, 814, 891
Eam1104I	CTCTTC	3 cut(s)	169, 276, 514
EarI	CTCTTC	3 cut(s)	169, 276, 514
Eco147I	AGGCCT	1 cut(s)	845
Eco31I	GGTCTC	1 cut(s)	479
EcoT22I	ATGCAT	2 cut(s)	582, 691
Esp3I	CGTCTC	1 cut(s)	716
FaeI	CATG	1 cut(s)	42
FaqI	GGGAC	1 cut(s)	740
FatI	CATG	1 cut(s)	38
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	5 cut(s)	9, 71, 74, 639, 786
Fsp4HI	GCNGC	5 cut(s)	9, 71, 74, 639, 786
FspBI	CTAG	3 cut(s)	602, 614, 869
GlaI	GCGC	2 cut(s)	495, 734
GluI	GCNGC	5 cut(s)	9, 71, 74, 639, 786
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	845
HhaI	GCGC	2 cut(s)	496, 735
Hin1II	CATG	1 cut(s)	42
Hin6I	GCGC	2 cut(s)	494, 733
HinP1I	GCGC	2 cut(s)	494, 733
HinfI	GANTC	6 cut(s)	25, 588, 633, 653, 677, 765
HphI	GGTGA	1 cut(s)	749
Hpy188I	TCNGA	5 cut(s)	21, 205, 326, 814, 861
Hpy188III	TCNNGA	5 cut(s)	268, 614, 657, 681, 869
HpyAV	CCTTC	2 cut(s)	111, 856
HpyCH4III	ACNGT	2 cut(s)	294, 352
HpyCH4IV	ACGT	2 cut(s)	386, 709
HpyCH4V	TGCA	6 cut(s)	148, 440, 548, 580, 689, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	502, 607, 842
HpyF3I	CTNAG	7 cut(s)	18, 96, 217, 694, 772, 811, 860
HpySE526I	ACGT	2 cut(s)	386, 709
Hsp92II	CATG	1 cut(s)	42
HspAI	GCGC	2 cut(s)	494, 733
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	4 cut(s)	166, 308, 814, 891
LguI	GCTCTTC	1 cut(s)	169
Lsp1109I	GCAGC	4 cut(s)	20, 85, 625, 797
LweI	GCATC	2 cut(s)	481, 676
MaeI	CTAG	3 cut(s)	602, 614, 869
MaeII	ACGT	2 cut(s)	386, 709
MalI	GATC	4 cut(s)	168, 310, 816, 893
MboI	GATC	4 cut(s)	166, 308, 814, 891
MboII	GAAGA	6 cut(s)	171, 186, 269, 293, 501, 890
MflI	RGATCY	2 cut(s)	814, 891
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	3 cut(s)	211, 466, 831
MlyI	GAGTC	1 cut(s)	774
MmeI	TCCRAC	3 cut(s)	207, 304, 625
MnlI	CCTC	9 cut(s)	15, 119, 226, 277, 470, 507, 536, 621, 835
Mph1103I	ATGCAT	2 cut(s)	582, 691
MroXI	GAANNNNTTC	2 cut(s)	261, 652
MseI	TTAA	5 cut(s)	105, 288, 362, 498, 564
MspA1I	CMGCKG	1 cut(s)	191
MspCI	CTTAAG	1 cut(s)	497
MvnI	CGCG	1 cut(s)	735
MwoI	GCNNNNNNNGC	3 cut(s)	502, 607, 842
NdeII	GATC	4 cut(s)	166, 308, 814, 891
NlaIII	CATG	1 cut(s)	42
NmeAIII	GCCGAG	1 cut(s)	695
NsiI	ATGCAT	2 cut(s)	582, 691
PceI	AGGCCT	1 cut(s)	845
PciSI	GCTCTTC	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	846
PdmI	GAANNNNTTC	2 cut(s)	261, 652
PfeI	GAWTC	5 cut(s)	25, 588, 633, 653, 677
PflMI	CCANNNNNTGG	1 cut(s)	567
PkrI	GCNGC	5 cut(s)	10, 72, 75, 640, 787
PleI	GAGTC	1 cut(s)	773
PpsI	GAGTC	1 cut(s)	773
PsiI	TTATAA	1 cut(s)	554
PsuI	RGATCY	2 cut(s)	814, 891
RsaI	GTAC	2 cut(s)	32, 317
RsaNI	GTAC	2 cut(s)	31, 316
SapI	GCTCTTC	1 cut(s)	169
SaqAI	TTAA	5 cut(s)	105, 288, 362, 498, 564
SatI	GCNGC	5 cut(s)	9, 71, 74, 639, 786
Sau3AI	GATC	4 cut(s)	166, 308, 814, 891
SchI	GAGTC	1 cut(s)	774
SduI	GDGCHC	1 cut(s)	378
SfaNI	GCATC	2 cut(s)	481, 676
SmlI	CTYRAG	2 cut(s)	266, 497
SmoI	CTYRAG	2 cut(s)	266, 497
Sse9I	AATT	3 cut(s)	211, 466, 831
SseBI	AGGCCT	1 cut(s)	845
SsiI	CCGC	4 cut(s)	71, 88, 191, 735
SspI	AATATT	1 cut(s)	781
SspMI	CTAG	3 cut(s)	602, 614, 869
StuI	AGGCCT	1 cut(s)	845
TaaI	ACNGT	2 cut(s)	294, 352
TaiI	ACGT	2 cut(s)	389, 712
TaqI	TCGA	3 cut(s)	512, 840, 849
TaqII	GACCGA	1 cut(s)	503
TasI	AATT	3 cut(s)	211, 466, 831
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	5 cut(s)	25, 588, 633, 653, 677
Tru1I	TTAA	5 cut(s)	105, 288, 362, 498, 564
Tru9I	TTAA	5 cut(s)	105, 288, 362, 498, 564
TscAI	CASTG	2 cut(s)	669, 702
TseI	GCWGC	4 cut(s)	8, 73, 638, 785
TspDTI	ATGAA	5 cut(s)	72, 270, 437, 443, 690
TspGWI	ACGGA	1 cut(s)	474
TspRI	CASTG	2 cut(s)	669, 702
Van91I	CCANNNNNTGG	1 cut(s)	567
Vha464I	CTTAAG	1 cut(s)	497
XapI	RAATTY	1 cut(s)	466
XbaI	TCTAGA	2 cut(s)	613, 868
XmnI	GAANNNNTTC	2 cut(s)	261, 652
XspI	CTAG	3 cut(s)	602, 614, 869
Zsp2I	ATGCAT	2 cut(s)	582, 691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.