Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004315

Physical Location & Seq

Genomic Coordinates Forward (+)

17764909 .. 17768867

Gene Structure 3959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G172800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGATGGTAATGGAGGCCACGGTTGCGCATAGGTTGCAGTTTTCTACCTGGATTGATTCGGAGAAGGTTGCGAGGCGGCCGAGCAGTTCAGCGCGGTGCTCTCAGAGATTGAAGGAGCAAAACAAGCTCCGGGTGCTTGTTGCAGCTCACCTACCCTCCTCTAGAGTCTCTAATCGCCAACGACATGTCGCTTTGGAGGTTTCATGCTCCTACAACAAGTTTCCAGCTTCAACAGTGGAATCTGGAAACTTTCAAACTCCTTTTGATGAATCTCTGGTTTTGAAGAATAAGGCACAAGCCATCGAGCCATATTTAAATGGACGATGTATATATCTTGTTGGTATGATGGGATCTGGGAAAACAACTGTTGGCAAGATTTTGTCGCAAGCAATTAATTATTCTTTTATTGATAGTGATACATTGGTGGAGCATGAGGTTGGTGGAACTTCTGTAGCTGAAATTTTCAAACTCAATGGAGAAGGCTTTTTCAGAGATAAAGAGACTGAGGTGCTACGTAAACTGTCTTTGATGCATCATCTTGTTGTTTCTACGGGTGGAGGTGCAGTTGTACGGCCCATCAACTGGAAATGTATGAAGAAGGGTATTAGTGTCTGGTTAGATGTACCCTTGGAAGCCCTGGCTCAGAGAATTGCCGCTGTGGGAACTGGTTCTCGCCCTCTTTTGCATCACGAGTCAGGGGATGCATACAGAAAAACTTTTATGCGTCTGACAAGCCTTTTTGAACAGAGAGGTGATTCATATGCTAATGCCAGTGCTAGGGTTTCCTTGGAAAATATTGCAGCCAAGTTGGGTTATAGAGATGTGTCCAGTCTCACTCCGACTGCCATTGTTATTGAGGTACTAGAACAAATTGAAGTCTTTCTGAAGGAAGAAGATGGCCATGCCCATATTACATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004765 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019438 GO:0019632 GO:0019752 GO:0032787 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

SKI

Protein Analysis

307

Amino Acids

33.93

Weight (kDa)

8.97

Isoelectric Point (pI)

40.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT4G39540 AT4G39540 AT4G39540
malus_domestica	MD01G1019500.v1.1 MD15G1332900.v1.1
prunus_persica	Prupe.6G172800_v2.0.a1 Prupe.6G172800_v2.0.a1
pyrus_communis	pycom01g04900 pycom15g29260
rosa_chinensis	RchiOBHm_Chr2g0116491 RchiOBHm_Chr2g0116501 RchiOBHm_Chr2g0116521 RchiOBHm_Chr6g0259311
rosa_laevigata	RLG00000018276 RLG00000018279
rosa_multiflora	Rmu_sc0004191.1_g000047 Rmu_sc0018630.1_g000001 Rmu_ssc0000050.1_g000062
rosa_roxburghii	Rroxscaffold_2G00127140 Rroxscaffold_2G00127150
rosa_rugosa	Rorug02G0207100 Rorug05G0587200
rosa_samantha	Rh2CG268700
rosa_wichuraiana	Rw2G020620 Rw2G020630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	27
AccB7I	CCANNNNNTGG	1 cut(s)	582
AccII	CGCG	1 cut(s)	94
AciI	CCGC	3 cut(s)	76, 94, 654
AclWI	GGATC	1 cut(s)	358
AcoI	YGGCCR	2 cut(s)	77, 898
AcsI	RAATTY	1 cut(s)	459
AcuI	CTGAAG	1 cut(s)	905
AfaI	GTAC	3 cut(s)	570, 624, 861
AfiI	CCNNNNNNNGG	2 cut(s)	582, 777
AflIII	ACRYGT	1 cut(s)	184
AgsI	TTSAA	7 cut(s)	112, 231, 254, 283, 466, 743, 875
AjnI	CCWGG	2 cut(s)	47, 636
AluBI	AGCT	4 cut(s)	127, 146, 227, 455
AluI	AGCT	4 cut(s)	127, 146, 227, 455
Alw21I	GWGCWC	1 cut(s)	101
Alw26I	GTCTC	3 cut(s)	172, 494, 836
AlwI	GGATC	1 cut(s)	358
AoxI	GGCC	4 cut(s)	15, 77, 572, 898
ApeKI	GCWGC	2 cut(s)	143, 800
ApoI	RAATTY	1 cut(s)	459
AseI	ATTAAT	1 cut(s)	393
Asp700I	GAANNNNTTC	2 cut(s)	667, 879
AspLEI	GCGC	2 cut(s)	28, 94
AspS9I	GGNCC	1 cut(s)	573
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	140, 764
BaeI	ACNNNNGTAYC	2 cut(s)	408, 441
BalI	TGGCCA	1 cut(s)	900
BauI	CACGAG	1 cut(s)	689
Bbv12I	GWGCWC	1 cut(s)	101
BbvI	GCAGC	2 cut(s)	155, 812
BccI	CCATC	4 cut(s)	308, 340, 584, 890
BceAI	ACGGC	1 cut(s)	587
BciT130I	CCWGG	2 cut(s)	49, 638
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	3 cut(s)	172, 494, 836
BfaI	CTAG	3 cut(s)	162, 777, 863
BfmI	CTRYAG	1 cut(s)	450
BisI	GCNGC	4 cut(s)	77, 144, 654, 801
BlsI	GCNGC	4 cut(s)	78, 145, 655, 802
Bme1390I	CCNGG	3 cut(s)	49, 131, 638
BmgT120I	GGNCC	1 cut(s)	573
BmrFI	CCNGG	3 cut(s)	49, 131, 638
BmsI	GCATC	4 cut(s)	519, 541, 691, 694
BpuMI	CCSGG	1 cut(s)	131
BsaAI	YACGTR	1 cut(s)	515
BsaJI	CCNNGG	4 cut(s)	18, 627, 636, 786
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 549, 579
Bsc4I	CCNNNNNNNGG	2 cut(s)	582, 777
Bse1I	ACTGG	4 cut(s)	587, 670, 771, 828
BseBI	CCWGG	2 cut(s)	49, 638
BseDI	CCNNGG	4 cut(s)	18, 627, 636, 786
BseGI	GGATG	1 cut(s)	706
BseLI	CCNNNNNNNGG	2 cut(s)	582, 777
BseMII	CTCAG	3 cut(s)	116, 495, 656
BseNI	ACTGG	4 cut(s)	587, 670, 771, 828
BseRI	GAGGAG	1 cut(s)	148
BseX3I	CGGCCG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	155, 812
BsgI	GTGCAG	1 cut(s)	582
Bsh1236I	CGCG	1 cut(s)	94
Bsh1285I	CGRYCG	1 cut(s)	80
BshFI	GGCC	4 cut(s)	17, 79, 574, 900
BsiEI	CGRYCG	1 cut(s)	80
BsiHKAI	GWGCWC	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	130
BslI	CCNNNNNNNGG	2 cut(s)	582, 777
BsmAI	GTCTC	3 cut(s)	172, 494, 836
BsnI	GGCC	4 cut(s)	17, 79, 574, 900
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	1 cut(s)	350
BspACI	CCGC	3 cut(s)	76, 94, 654
BspANI	GGCC	4 cut(s)	17, 79, 574, 900
BspCNI	CTCAG	3 cut(s)	115, 496, 655
BspFNI	CGCG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	358
BsrI	ACTGG	4 cut(s)	587, 670, 771, 828
BssECI	CCNNGG	4 cut(s)	18, 627, 636, 786
BssMI	GATC	1 cut(s)	350
BssSI	CACGAG	1 cut(s)	689
BssT1I	CCWWGG	2 cut(s)	627, 786
Bst2BI	CACGAG	1 cut(s)	689
Bst2UI	CCWGG	2 cut(s)	49, 638
Bst4CI	ACNGT	4 cut(s)	22, 235, 367, 522
BstAPI	GCANNNNNTGC	1 cut(s)	34
BstBAI	YACGTR	1 cut(s)	515
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	3 cut(s)	102, 504, 642
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	706
BstFNI	CGCG	1 cut(s)	94
BstHHI	GCGC	2 cut(s)	28, 94
BstKTI	GATC	1 cut(s)	353
BstMAI	GTCTC	3 cut(s)	172, 494, 836
BstMBI	GATC	1 cut(s)	350
BstMCI	CGRYCG	1 cut(s)	80
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 34, 124, 133
BstNI	CCWGG	2 cut(s)	49, 638
BstNSI	RCATGY	1 cut(s)	188
BstSCI	CCNGG	3 cut(s)	47, 129, 636
BstSFI	CTRYAG	1 cut(s)	450
BstSNI	TACGTA	1 cut(s)	515
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	155, 812
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
BstZI	CGGCCG	1 cut(s)	77
BsuRI	GGCC	4 cut(s)	17, 79, 574, 900
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	706
BtsIMutI	CAGTG	2 cut(s)	240, 778
Cac8I	GCNNGC	1 cut(s)	387
CfoI	GCGC	2 cut(s)	28, 94
Cfr13I	GGNCC	1 cut(s)	573
CseI	GACGC	1 cut(s)	713
Csp6I	GTAC	3 cut(s)	569, 623, 860
CviAII	CATG	4 cut(s)	185, 204, 431, 902
CviQI	GTAC	3 cut(s)	569, 623, 860
DdeI	CTNAG	3 cut(s)	102, 504, 642
DpnI	GATC	1 cut(s)	352
DpnII	GATC	1 cut(s)	350
DraI	TTTAAA	1 cut(s)	315
EaeI	YGGCCR	2 cut(s)	77, 898
EagI	CGGCCG	1 cut(s)	77
EclXI	CGGCCG	1 cut(s)	77
Eco105I	TACGTA	1 cut(s)	515
Eco130I	CCWWGG	2 cut(s)	627, 786
Eco52I	CGGCCG	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	905
EcoRII	CCWGG	2 cut(s)	47, 636
EcoT14I	CCWWGG	2 cut(s)	627, 786
EcoT22I	ATGCAT	2 cut(s)	534, 706
ErhI	CCWWGG	2 cut(s)	627, 786
FaeI	CATG	4 cut(s)	188, 207, 434, 905
FatI	CATG	4 cut(s)	184, 203, 430, 901
FauNDI	CATATG	1 cut(s)	760
Fnu4HI	GCNGC	4 cut(s)	77, 144, 654, 801
FokI	GGATG	1 cut(s)	713
Fsp4HI	GCNGC	4 cut(s)	77, 144, 654, 801
FspBI	CTAG	3 cut(s)	162, 777, 863
FspI	TGCGCA	1 cut(s)	27
GlaI	GCGC	2 cut(s)	27, 93
GluI	GCNGC	4 cut(s)	77, 144, 654, 801
HaeIII	GGCC	4 cut(s)	17, 79, 574, 900
HapII	CCGG	1 cut(s)	130
HgaI	GACGC	1 cut(s)	713
HhaI	GCGC	2 cut(s)	28, 94
Hin1II	CATG	4 cut(s)	188, 207, 434, 905
Hin6I	GCGC	2 cut(s)	26, 92
HinP1I	GCGC	2 cut(s)	26, 92
HinfI	GANTC	6 cut(s)	56, 165, 239, 269, 692, 755
HpaII	CCGG	1 cut(s)	130
HphI	GGTGA	2 cut(s)	140, 764
Hpy166II	GTNNAC	1 cut(s)	518
Hpy188I	TCNGA	7 cut(s)	61, 105, 491, 645, 729, 840, 885
Hpy188III	TCNNGA	3 cut(s)	162, 243, 689
Hpy8I	GTNNAC	1 cut(s)	518
HpyAV	CCTTC	5 cut(s)	58, 106, 473, 592, 880
HpyCH4III	ACNGT	4 cut(s)	22, 235, 367, 522
HpyCH4IV	ACGT	1 cut(s)	514
HpyCH4V	TGCA	7 cut(s)	37, 143, 532, 563, 685, 704, 800
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 34, 124, 133
HpyF3I	CTNAG	3 cut(s)	102, 504, 642
HpySE526I	ACGT	1 cut(s)	514
Hsp92II	CATG	4 cut(s)	188, 207, 434, 905
HspAI	GCGC	2 cut(s)	26, 92
Kzo9I	GATC	1 cut(s)	350
LmnI	GCTCC	4 cut(s)	115, 132, 212, 427
Lsp1109I	GCAGC	2 cut(s)	155, 812
LweI	GCATC	4 cut(s)	519, 541, 691, 694
MaeI	CTAG	3 cut(s)	162, 777, 863
MaeII	ACGT	1 cut(s)	514
MalI	GATC	1 cut(s)	352
MboI	GATC	1 cut(s)	350
MboII	GAAGA	4 cut(s)	295, 607, 902, 905
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	1 cut(s)	101
MlsI	TGGCCA	1 cut(s)	900
MluCI	AATT	5 cut(s)	390, 394, 459, 648, 870
MluNI	TGGCCA	1 cut(s)	900
MlyI	GAGTC	2 cut(s)	174, 701
MmeI	TCCRAC	1 cut(s)	863
Mox20I	TGGCCA	1 cut(s)	900
Mph1103I	ATGCAT	2 cut(s)	534, 706
MroXI	GAANNNNTTC	2 cut(s)	667, 879
MscI	TGGCCA	1 cut(s)	900
MseI	TTAA	2 cut(s)	314, 393
Msp20I	TGGCCA	1 cut(s)	900
MspA1I	CMGCKG	1 cut(s)	656
MspI	CCGG	1 cut(s)	130
MspR9I	CCNGG	3 cut(s)	49, 131, 638
MvaI	CCWGG	2 cut(s)	49, 638
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	4 cut(s)	23, 34, 124, 133
NciI	CCSGG	1 cut(s)	131
NdeI	CATATG	1 cut(s)	760
NdeII	GATC	1 cut(s)	350
NlaIII	CATG	4 cut(s)	188, 207, 434, 905
NmeAIII	GCCGAG	1 cut(s)	105
NsbI	TGCGCA	1 cut(s)	27
NsiI	ATGCAT	2 cut(s)	534, 706
NspI	RCATGY	1 cut(s)	188
PciI	ACATGT	1 cut(s)	184
PdmI	GAANNNNTTC	2 cut(s)	667, 879
PfeI	GAWTC	4 cut(s)	56, 239, 269, 755
PflMI	CCANNNNNTGG	1 cut(s)	582
PkrI	GCNGC	4 cut(s)	78, 145, 655, 802
PleI	GAGTC	2 cut(s)	173, 700
PpsI	GAGTC	2 cut(s)	173, 700
Ppu21I	YACGTR	1 cut(s)	515
PscI	ACATGT	1 cut(s)	184
PshBI	ATTAAT	1 cut(s)	393
Psp6I	CCWGG	2 cut(s)	47, 636
PspGI	CCWGG	2 cut(s)	47, 636
PspPI	GGNCC	1 cut(s)	573
PsuI	RGATCY	1 cut(s)	350
RsaI	GTAC	3 cut(s)	570, 624, 861
RsaNI	GTAC	3 cut(s)	569, 623, 860
SaqAI	TTAA	2 cut(s)	314, 393
SatI	GCNGC	4 cut(s)	77, 144, 654, 801
Sau3AI	GATC	1 cut(s)	350
Sau96I	GGNCC	1 cut(s)	573
SchI	GAGTC	2 cut(s)	174, 701
ScrFI	CCNGG	3 cut(s)	49, 131, 638
SduI	GDGCHC	1 cut(s)	101
SfaNI	GCATC	4 cut(s)	519, 541, 691, 694
SfcI	CTRYAG	1 cut(s)	450
SmiI	ATTTAAAT	1 cut(s)	315
SnaBI	TACGTA	1 cut(s)	515
Sse9I	AATT	5 cut(s)	390, 394, 459, 648, 870
SsiI	CCGC	3 cut(s)	76, 94, 654
SspI	AATATT	1 cut(s)	796
SspMI	CTAG	3 cut(s)	162, 777, 863
StyD4I	CCNGG	3 cut(s)	47, 129, 636
StyI	CCWWGG	2 cut(s)	627, 786
SwaI	ATTTAAAT	1 cut(s)	315
TaaI	ACNGT	4 cut(s)	22, 235, 367, 522
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	1 cut(s)	303
TasI	AATT	5 cut(s)	390, 394, 459, 648, 870
TauI	GCSGC	2 cut(s)	79, 656
TfiI	GAWTC	4 cut(s)	56, 239, 269, 755
Tru1I	TTAA	2 cut(s)	314, 393
Tru9I	TTAA	2 cut(s)	314, 393
TscAI	CASTG	2 cut(s)	240, 778
TseI	GCWGC	2 cut(s)	143, 800
TspDTI	ATGAA	4 cut(s)	192, 282, 608, 747
TspRI	CASTG	2 cut(s)	240, 778
Van91I	CCANNNNNTGG	1 cut(s)	582
VspI	ATTAAT	1 cut(s)	393
XapI	RAATTY	1 cut(s)	459
XbaI	TCTAGA	1 cut(s)	161
XceI	RCATGY	1 cut(s)	188
XmnI	GAANNNNTTC	2 cut(s)	667, 879
XspI	CTAG	3 cut(s)	162, 777, 863
Zsp2I	ATGCAT	2 cut(s)	534, 706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.