Rorug05G0587200

Shikimate kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
78506258 .. 78507643
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0587200.1

Sequence Viewer

Length: 1146 bp
ATGGGTTGCAAAACTCTAGTATTCCTCACCATTTCATCTAGTTTTCTAGGTGGTGAAATGCCAGGTGATGATGGGATTGTTGAATTTGATGGATTCCAAAGTATTCGACTTTTGGATTTGAGTTCTTGTGGACTCACTGGTGAAATACCTGGATGGTTATCTAAGCTGAAGAAGCTGGAGATCCTGAATCTGGATTCTAATAGAATCACAGGGTCAATTCCTAGTTGGCTCGGGACTTTACCACGGCTGCATTCTATACTCTTGGCATCCAACCAAATTTCAGGTGGTTTTCCAAAAGAACTTTGTAGGCTGCCGATGTTGGTACATGGGCGAGCTGCAGCTCAAGTAGATCGTAATCATCTTGAGCTGCCTATATTTGACAAACCGGAAGATGGAGACACTATACAGTACAGTTCTTTGTCTCTCTTTTCTCCAATGATTGATCTATCAAACAACAACATGAGTGGAAGTATACCTTCCGAGATCGGCCAAATGCAGTTTCTCAGTGAGTTGCATCTTAGCTTCAACAACTTTTCTGGTGACATTCCACACCAAATATCTAATCTTAAAAATTTGAAGGTATTGGATCTCTCCAACAATCATTTGTCTGGGAAGATTCCAGCCTCACTGACATTCCTTAACTTGCTGGGAATTTTTAATGTCTCATACAATAATCTGGAAGGACCAATTACTACAAGCATTCAGTTTCAAAGCTTCGGTGCGTATGCATTTGAAGGCAATCCAAAGCTTTGTGGCGCCCTGCTTCAAAAAGAGTGTCAACCAAGAAAGGTCATCGATGGTAATGAAAAGGGCAAAAACCAAGATGTCGAGAATGCGTCTCAAAATCAAAATCCATGGTCTTATATTTCCATTGTGCTTGGGTTCATTACAGGATTTTGGGGAGTTTGTGGTCCTTTGATGCTCAAGAAGACATGGAGAAATGCATATTTTCAATGCCTAGACAATGCTAAAAATAAGGTTTGGAACCCAGCCGAGCTGGGAGGCTCAGCCCCACGCCCGGTTCAAATTAATAAAGGAAGAAAGCAACGGGGGGGACATAACAACCTGTACCCCGAGCTCATTACACAGGAGATCAAGCATCTGAAAAGGAAAGTACAAGTTGGAACTCCTGAAAGGAGCCCATGA

Protein Analysis

381

Amino Acids

42.04

Weight (kDa)

8.39

Isoelectric Point (pI)

31.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 35 - 93 2e-08 Leucine rich repeat
LRR_8 PF13855 168 - 226 8e-07 Leucine rich repeat
LRR_LRWD1 PF23211 183 - 250 1e-05 Leucine-rich repeat and WD repeat-containing protein 1, LRR
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 755
AccI GTMKAC 1 cut(s) 472
AclWI GGATC 2 cut(s) 175, 594
AcoI YGGCCR 1 cut(s) 487
AcsI RAATTY 4 cut(s) 83, 276, 571, 651
AcuI CTGAAG 1 cut(s) 188
AcyI GRCGYC 1 cut(s) 756
AfaI GTAC 4 cut(s) 324, 410, 1070, 1116
AfiI CCNNNNNNNGG 3 cut(s) 190, 392, 1018
AgsI TTSAA 8 cut(s) 83, 526, 577, 710, 734, 767, 953, 1025
AjnI CCWGG 2 cut(s) 61, 148
AjuI GAANNNNNNNTTGG 2 cut(s) 483, 515
Alw21I GWGCWC 1 cut(s) 1080
Alw26I GTCTC 4 cut(s) 390, 426, 667, 843
AlwI GGATC 2 cut(s) 175, 594
Ama87I CYCGRG 2 cut(s) 230, 1073
AoxI GGCC 1 cut(s) 487
ApeKI GCWGC 5 cut(s) 247, 310, 335, 338, 367
ApoI RAATTY 4 cut(s) 83, 276, 571, 651
ArsI GACNNNNNNTTYG 2 cut(s) 760, 792
AseI ATTAAT 1 cut(s) 1029
AspLEI GCGC 1 cut(s) 758
AspS9I GGNCC 2 cut(s) 683, 911
AsuC2I CCSGG 1 cut(s) 1019
AsuHPI GGTGA 5 cut(s) 19, 65, 77, 152, 551
AvaI CYCGRG 2 cut(s) 230, 1073
AvaII GGWCC 2 cut(s) 683, 911
BanI GGYRCC 1 cut(s) 755
BanII GRGCYC 2 cut(s) 1080, 1142
BbsI GAAGAC 1 cut(s) 935
Bbv12I GWGCWC 1 cut(s) 1080
BbvI GCAGC 5 cut(s) 234, 297, 322, 350, 354
BccI CCATC 5 cut(s) 65, 83, 147, 386, 791
BceAI ACGGC 1 cut(s) 260
BciT130I CCWGG 2 cut(s) 63, 150
BcnI CCSGG 1 cut(s) 1019
BcoDI GTCTC 4 cut(s) 390, 426, 667, 843
BfaI CTAG 5 cut(s) 17, 39, 47, 222, 959
BfmI CTRYAG 1 cut(s) 336
BfoI RGCGCY 1 cut(s) 759
BisI GCNGC 5 cut(s) 248, 311, 336, 339, 368
BlpI GCTNAGC 1 cut(s) 1006
BlsI GCNGC 5 cut(s) 249, 312, 337, 340, 369
Bme1390I CCNGG 3 cut(s) 63, 150, 1019
Bme18I GGWCC 2 cut(s) 683, 911
BmeT110I CYCGRG 2 cut(s) 230, 1073
BmgT120I GGNCC 2 cut(s) 683, 911
BmiI GGNNCC 3 cut(s) 757, 986, 1139
BmrFI CCNGG 3 cut(s) 63, 150, 1019
BmsI GCATC 4 cut(s) 275, 523, 909, 1108
BpiI GAAGAC 1 cut(s) 935
BpmI CTGGAG 1 cut(s) 197
Bpu1102I GCTNAGC 1 cut(s) 1006
BpuEI CTTGAG 3 cut(s) 327, 383, 908
BpuMI CCSGG 1 cut(s) 1019
Bsa29I ATCGAT 1 cut(s) 795
BsaBI GATNNNNATC 2 cut(s) 157, 354
BsaHI GRCGYC 1 cut(s) 756
BsaJI CCNNGG 2 cut(s) 242, 854
BsaWI WCCGGW 1 cut(s) 385
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 392, 1018
Bse1I ACTGG 1 cut(s) 142
Bse8I GATNNNNATC 2 cut(s) 157, 354
BseBI CCWGG 2 cut(s) 63, 150
BseCI ATCGAT 1 cut(s) 795
BseDI CCNNGG 2 cut(s) 242, 854
BseGI GGATG 2 cut(s) 158, 266
BseJI GATNNNNATC 2 cut(s) 157, 354
BseLI CCNNNNNNNGG 3 cut(s) 190, 392, 1018
BseMII CTCAG 2 cut(s) 517, 1020
BseNI ACTGG 1 cut(s) 142
BseXI GCAGC 5 cut(s) 234, 297, 322, 350, 354
BseYI CCCAGC 3 cut(s) 646, 988, 997
BshFI GGCC 1 cut(s) 489
BshNI GGYRCC 1 cut(s) 755
BshVI ATCGAT 1 cut(s) 795
BsiHKAI GWGCWC 1 cut(s) 1080
BsiHKCI CYCGRG 2 cut(s) 230, 1073
BsiSI CCGG 2 cut(s) 386, 1019
BslFI GGGAC 2 cut(s) 247, 1068
BslI CCNNNNNNNGG 3 cut(s) 190, 392, 1018
BsmAI GTCTC 4 cut(s) 390, 426, 667, 843
BsmBI CGTCTC 1 cut(s) 843
BsmFI GGGAC 2 cut(s) 247, 1068
BsmI GAATGC 3 cut(s) 250, 699, 838
BsnI GGCC 1 cut(s) 489
BsoBI CYCGRG 2 cut(s) 230, 1073
Bsp1286I GDGCHC 2 cut(s) 1080, 1142
Bsp143I GATC 6 cut(s) 180, 349, 442, 483, 586, 1092
Bsp1720I GCTNAGC 1 cut(s) 1006
Bsp19I CCATGG 1 cut(s) 854
BspANI GGCC 1 cut(s) 489
BspCNI CTCAG 2 cut(s) 516, 1019
BspDI ATCGAT 1 cut(s) 795
BspLI GGNNCC 3 cut(s) 757, 986, 1139
BspMAI CTGCAG 1 cut(s) 340
BspPI GGATC 2 cut(s) 175, 594
BspT107I GGYRCC 1 cut(s) 755
BsrI ACTGG 1 cut(s) 142
BssECI CCNNGG 2 cut(s) 242, 854
BssMI GATC 6 cut(s) 180, 349, 442, 483, 586, 1092
BssNAI GTATAC 1 cut(s) 473
BssNI GRCGYC 1 cut(s) 756
BssT1I CCWWGG 1 cut(s) 854
Bst1107I GTATAC 1 cut(s) 473
Bst2UI CCWGG 2 cut(s) 63, 150
Bst4CI ACNGT 2 cut(s) 408, 413
BstACI GRCGYC 1 cut(s) 756
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 4 cut(s) 162, 503, 518, 1006
BstDSI CCRYGG 2 cut(s) 242, 854
BstF5I GGATG 2 cut(s) 158, 266
BstH2I RGCGCY 1 cut(s) 759
BstHHI GCGC 1 cut(s) 758
BstKTI GATC 6 cut(s) 183, 352, 445, 486, 589, 1095
BstMAI GTCTC 4 cut(s) 390, 426, 667, 843
BstMBI GATC 6 cut(s) 180, 349, 442, 483, 586, 1092
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstNI CCWGG 2 cut(s) 63, 150
BstSCI CCNGG 3 cut(s) 61, 148, 1017
BstSFI CTRYAG 1 cut(s) 336
BstV1I GCAGC 5 cut(s) 234, 297, 322, 350, 354
BstV2I GAAGAC 1 cut(s) 935
BstX2I RGATCY 2 cut(s) 180, 586
BstYI RGATCY 2 cut(s) 180, 586
BstZ17I GTATAC 1 cut(s) 473
Bsu15I ATCGAT 1 cut(s) 795
BsuRI GGCC 1 cut(s) 489
BsuTUI ATCGAT 1 cut(s) 795
BtgI CCRYGG 2 cut(s) 242, 854
BtsCI GGATG 2 cut(s) 158, 266
BtsIMutI CAGTG 3 cut(s) 135, 511, 626
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 1 cut(s) 758
Cfr13I GGNCC 2 cut(s) 683, 911
ClaI ATCGAT 1 cut(s) 795
CseI GACGC 1 cut(s) 825
Csp6I GTAC 4 cut(s) 323, 409, 1069, 1115
CspCI CAANNNNNGTGG 2 cut(s) 445, 480
CviAII CATG 5 cut(s) 326, 460, 855, 933, 1143
CviQI GTAC 4 cut(s) 323, 409, 1069, 1115
DdeI CTNAG 4 cut(s) 162, 503, 518, 1006
DinI GGCGCC 1 cut(s) 757
DpnI GATC 6 cut(s) 182, 351, 444, 485, 588, 1094
DpnII GATC 6 cut(s) 180, 349, 442, 483, 586, 1092
EaeI YGGCCR 1 cut(s) 487
Ecl136II GAGCTC 1 cut(s) 1078
Eco130I CCWWGG 1 cut(s) 854
Eco24I GRGCYC 2 cut(s) 1080, 1142
Eco47I GGWCC 2 cut(s) 683, 911
Eco53kI GAGCTC 1 cut(s) 1078
Eco57I CTGAAG 1 cut(s) 188
Eco88I CYCGRG 2 cut(s) 230, 1073
EcoICRI GAGCTC 1 cut(s) 1078
EcoRII CCWGG 2 cut(s) 61, 148
EcoT14I CCWWGG 1 cut(s) 854
EcoT22I ATGCAT 2 cut(s) 730, 946
EcoT38I GRGCYC 2 cut(s) 1080, 1142
EgeI GGCGCC 1 cut(s) 757
EheI GGCGCC 1 cut(s) 757
ErhI CCWWGG 1 cut(s) 854
Esp3I CGTCTC 1 cut(s) 843
FaeI CATG 5 cut(s) 329, 463, 858, 936, 1146
FalI AAGNNNNNCTT 2 cut(s) 460, 492
FaqI GGGAC 2 cut(s) 247, 1068
FatI CATG 5 cut(s) 325, 459, 854, 932, 1142
FblI GTMKAC 1 cut(s) 472
Fnu4HI GCNGC 5 cut(s) 248, 311, 336, 339, 368
FokI GGATG 2 cut(s) 165, 253
FriOI GRGCYC 2 cut(s) 1080, 1142
Fsp4HI GCNGC 5 cut(s) 248, 311, 336, 339, 368
FspBI CTAG 5 cut(s) 17, 39, 47, 222, 959
GlaI GCGC 1 cut(s) 757
GluI GCNGC 5 cut(s) 248, 311, 336, 339, 368
GsaI CCCAGC 3 cut(s) 650, 992, 1001
GsuI CTGGAG 1 cut(s) 197
HaeII RGCGCY 1 cut(s) 759
HaeIII GGCC 1 cut(s) 489
HapII CCGG 2 cut(s) 386, 1019
HgaI GACGC 1 cut(s) 825
HhaI GCGC 1 cut(s) 758
Hin1I GRCGYC 1 cut(s) 756
Hin1II CATG 5 cut(s) 329, 463, 858, 936, 1146
Hin6I GCGC 1 cut(s) 756
HinP1I GCGC 1 cut(s) 756
HincII GTYRAC 1 cut(s) 779
HindII GTYRAC 1 cut(s) 779
HindIII AAGCTT 2 cut(s) 712, 746
HinfI GANTC 6 cut(s) 93, 132, 187, 194, 204, 616
HpaII CCGG 2 cut(s) 386, 1019
HphI GGTGA 5 cut(s) 19, 65, 77, 152, 551
Hpy166II GTNNAC 3 cut(s) 131, 473, 779
Hpy188I TCNGA 2 cut(s) 481, 1104
Hpy188III TCNNGA 8 cut(s) 184, 191, 232, 362, 677, 829, 925, 1130
Hpy8I GTNNAC 3 cut(s) 131, 473, 779
HpyAV CCTTC 4 cut(s) 486, 571, 674, 728
HpyCH4III ACNGT 2 cut(s) 408, 413
HpyCH4V TGCA 7 cut(s) 9, 250, 338, 496, 514, 728, 944
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 4 cut(s) 162, 503, 518, 1006
Hsp92I GRCGYC 1 cut(s) 756
Hsp92II CATG 5 cut(s) 329, 463, 858, 936, 1146
HspAI GCGC 1 cut(s) 756
KasI GGCGCC 1 cut(s) 755
Kzo9I GATC 6 cut(s) 180, 349, 442, 483, 586, 1092
LmnI GCTCC 1 cut(s) 1137
Lsp1109I GCAGC 5 cut(s) 234, 297, 322, 350, 354
LweI GCATC 4 cut(s) 275, 523, 909, 1108
MaeI CTAG 5 cut(s) 17, 39, 47, 222, 959
MaeIII GTNAC 1 cut(s) 539
MalI GATC 6 cut(s) 182, 351, 444, 485, 588, 1094
MboI GATC 6 cut(s) 180, 349, 442, 483, 586, 1092
MboII GAAGA 5 cut(s) 181, 401, 625, 940, 1050
MflI RGATCY 2 cut(s) 180, 586
MhlI GDGCHC 2 cut(s) 1080, 1142
MluCI AATT 7 cut(s) 83, 216, 276, 571, 651, 687, 1026
Mly113I GGCGCC 1 cut(s) 756
MlyI GAGTC 1 cut(s) 126
MmeI TCCRAC 3 cut(s) 294, 618, 1102
MnlI CCTC 3 cut(s) 35, 634, 995
Mph1103I ATGCAT 2 cut(s) 730, 946
MseI TTAA 4 cut(s) 567, 639, 657, 1029
MspI CCGG 2 cut(s) 386, 1019
MspR9I CCNGG 3 cut(s) 63, 150, 1019
Mva1269I GAATGC 3 cut(s) 250, 699, 838
MvaI CCWGG 2 cut(s) 63, 150
MwoI GCNNNNNNNGC 1 cut(s) 172
NarI GGCGCC 1 cut(s) 756
NciI CCSGG 1 cut(s) 1019
NcoI CCATGG 1 cut(s) 854
NdeII GATC 6 cut(s) 180, 349, 442, 483, 586, 1092
NlaIII CATG 5 cut(s) 329, 463, 858, 936, 1146
NlaIV GGNNCC 3 cut(s) 757, 986, 1139
NmeAIII GCCGAG 1 cut(s) 1018
NmuCI GTSAC 1 cut(s) 539
NsiI ATGCAT 2 cut(s) 730, 946
PctI GAATGC 3 cut(s) 250, 699, 838
PfeI GAWTC 5 cut(s) 93, 187, 194, 204, 616
PkrI GCNGC 5 cut(s) 249, 312, 337, 340, 369
PleI GAGTC 1 cut(s) 126
PluTI GGCGCC 1 cut(s) 759
PpsI GAGTC 1 cut(s) 126
PshBI ATTAAT 1 cut(s) 1029
Psp124BI GAGCTC 1 cut(s) 1080
Psp6I CCWGG 2 cut(s) 61, 148
PspFI CCCAGC 3 cut(s) 646, 988, 997
PspGI CCWGG 2 cut(s) 61, 148
PspN4I GGNNCC 3 cut(s) 757, 986, 1139
PspPI GGNCC 2 cut(s) 683, 911
PstI CTGCAG 1 cut(s) 340
PsuI RGATCY 2 cut(s) 180, 586
RsaI GTAC 4 cut(s) 324, 410, 1070, 1116
RsaNI GTAC 4 cut(s) 323, 409, 1069, 1115
SacI GAGCTC 1 cut(s) 1080
SaqAI TTAA 4 cut(s) 567, 639, 657, 1029
SatI GCNGC 5 cut(s) 248, 311, 336, 339, 368
Sau3AI GATC 6 cut(s) 180, 349, 442, 483, 586, 1092
Sau96I GGNCC 2 cut(s) 683, 911
SchI GAGTC 1 cut(s) 126
ScrFI CCNGG 3 cut(s) 63, 150, 1019
SduI GDGCHC 2 cut(s) 1080, 1142
SfaNI GCATC 4 cut(s) 275, 523, 909, 1108
SfcI CTRYAG 1 cut(s) 336
SfoI GGCGCC 1 cut(s) 757
SinI GGWCC 2 cut(s) 683, 911
SmlI CTYRAG 3 cut(s) 342, 362, 923
SmoI CTYRAG 3 cut(s) 342, 362, 923
Sse9I AATT 7 cut(s) 83, 216, 276, 571, 651, 687, 1026
SspDI GGCGCC 1 cut(s) 755
SspMI CTAG 5 cut(s) 17, 39, 47, 222, 959
SstI GAGCTC 1 cut(s) 1080
StyD4I CCNGG 3 cut(s) 61, 148, 1017
StyI CCWWGG 1 cut(s) 854
TaaI ACNGT 2 cut(s) 408, 413
TaqI TCGA 3 cut(s) 106, 795, 828
TasI AATT 7 cut(s) 83, 216, 276, 571, 651, 687, 1026
TatI WGTACW 2 cut(s) 408, 1114
TfiI GAWTC 5 cut(s) 93, 187, 194, 204, 616
Tru1I TTAA 4 cut(s) 567, 639, 657, 1029
Tru9I TTAA 4 cut(s) 567, 639, 657, 1029
TscAI CASTG 3 cut(s) 142, 511, 633
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 5 cut(s) 247, 310, 335, 338, 367
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 3 cut(s) 24, 819, 874
TspRI CASTG 3 cut(s) 142, 511, 633
VpaK11BI GGWCC 2 cut(s) 683, 911
VspI ATTAAT 1 cut(s) 1029
XapI RAATTY 4 cut(s) 83, 276, 571, 651
XcmI CCANNNNNNNNNTGG 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 472
XspI CTAG 5 cut(s) 17, 39, 47, 222, 959
Zsp2I ATGCAT 2 cut(s) 730, 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.