Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004315

Physical Location & Seq

Genomic Coordinates Forward (+)

36938076 .. 36942984

Gene Structure 4909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1332900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAGTATGGAGGCGGCTACGGTTGCGCCGAGATTGCAAATTTCAACATGGGTGGATTCCGACAAGGTTGCGAGGAGGCTGCGGACGCGCTCGGCGGCCTCCTTCTCTCCGAGATTGAAGGACCGAAACATGACCCAGGTGCTGCTGCCTCACCTACCAACCTCAAAAGTCTCCAATCGACAACGACATGTCGCCTTGGAGGTTTCATGCTCTTACAATAACTTTCCAGCTTCGACAGTGGAATCTGGAAATTTTCATACTCTCGATGAATCGCTGGTTTTGAAGAATAAGGCACTAGCAATCGAGCCATATTTGAATGGACGTTGTATATATCTTGTTGGTATGATGGGATCTGGGAAAACAACCGTTGGCAAGATCATGGCACAAGCACTTAGTTATTCATTCATTGATAGTGATTCATTGGTGGAGCATGATGTTGGTGGAACTTCCGTAGCTGAGATTTTCAAACTCTATGGAGAGGGATTTTTCAGAGATAAGGAGACTGAGGCGCTACGTAAACTGTCTTTGATGCATCGTTTAGTTGTTTCTACGGGTGGAGGTGCAGTTGTACGCCCTGTCAACTGGAAGTGTATGAAGAAGGGGATTAGTGTGTGGTTAGATGTTCCCTTGGAAGCCTTGGCTCAGAGAATTGCAGCTGTGGGAACTGGTTCTCGGCCCCTTTTGCATCACGGGTCAGGGGATGCATACAGAAAAACTTATATGCGTCTGACTAGTCTTTTTGAAGAGAGAGGTGATTCATATGCCAATGCCAATGCTAGGGTTTCCTTGGAAAATATTGCAGCCAAATTGGGTTATAGAGATGTATCCAATCTCACACCTACTGCCATTGTGATTGAGGCGCTTGAACAAATTGAAAGCTATCTGAAGGAAGAACACAGGCATGCACATATTACGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004765 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019438 GO:0019632 GO:0019752 GO:0032787 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

SKI

Protein Analysis

307

Amino Acids

33.87

Weight (kDa)

9.26

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_18	PF13238	110 - 221	5.4e-07	AAA domain
SKI	PF01202	116 - 269	5.7e-42	Shikimate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT4G39540 AT4G39540 AT4G39540
malus_domestica	MD01G1019500.v1.1 MD15G1332900.v1.1
prunus_persica	Prupe.6G172800_v2.0.a1 Prupe.6G172800_v2.0.a1
pyrus_communis	pycom01g04900 pycom15g29260
rosa_chinensis	RchiOBHm_Chr2g0116491 RchiOBHm_Chr2g0116501 RchiOBHm_Chr2g0116521 RchiOBHm_Chr6g0259311
rosa_laevigata	RLG00000018276 RLG00000018279
rosa_multiflora	Rmu_sc0004191.1_g000047 Rmu_sc0018630.1_g000001 Rmu_ssc0000050.1_g000062
rosa_roxburghii	Rroxscaffold_2G00127140 Rroxscaffold_2G00127150
rosa_rugosa	Rorug02G0207100 Rorug05G0587200
rosa_samantha	Rh2CG268700
rosa_wichuraiana	Rw2G020620 Rw2G020630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	88
AciI	CCGC	3 cut(s)	14, 82, 95
AclWI	GGATC	1 cut(s)	358
AcsI	RAATTY	2 cut(s)	39, 250
AcuI	CTGAAG	1 cut(s)	905
AfaI	GTAC	1 cut(s)	570
AfiI	CCNNNNNNNGG	1 cut(s)	777
AflIII	ACRYGT	1 cut(s)	187
AgsI	TTSAA	8 cut(s)	45, 118, 283, 316, 466, 743, 866, 875
AhlI	ACTAGT	1 cut(s)	731
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	4 cut(s)	230, 455, 656, 879
AluI	AGCT	4 cut(s)	230, 455, 656, 879
Alw26I	GTCTC	2 cut(s)	175, 494
AlwI	GGATC	1 cut(s)	358
AlwNI	CAGNNNCTG	1 cut(s)	142
AoxI	GGCC	2 cut(s)	96, 674
ApeKI	GCWGC	5 cut(s)	79, 142, 145, 653, 800
ApoI	RAATTY	2 cut(s)	39, 250
Asp700I	GAANNNNTTC	1 cut(s)	667
AspLEI	GCGC	4 cut(s)	28, 90, 511, 862
AspS9I	GGNCC	2 cut(s)	121, 675
AsuHPI	GGTGA	2 cut(s)	143, 764
AvaII	GGWCC	1 cut(s)	121
BbvI	GCAGC	5 cut(s)	66, 129, 132, 665, 812
BccI	CCATC	1 cut(s)	340
BcgI	CGANNNNNNTGC	4 cut(s)	50, 61, 84, 95
BciT130I	CCWGG	1 cut(s)	137
BciVI	GTATCC	1 cut(s)	835
BcoDI	GTCTC	2 cut(s)	175, 494
BcuI	ACTAGT	1 cut(s)	731
BfaI	CTAG	3 cut(s)	296, 732, 777
BfoI	RGCGCY	2 cut(s)	512, 863
BfuI	GTATCC	1 cut(s)	835
BisI	GCNGC	7 cut(s)	15, 80, 96, 143, 146, 654, 801
BlsI	GCNGC	7 cut(s)	16, 81, 97, 144, 147, 655, 802
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	121, 675
BmiI	GGNNCC	1 cut(s)	677
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	4 cut(s)	519, 541, 691, 694
BsaAI	YACGTR	1 cut(s)	515
BsaJI	CCNNGG	5 cut(s)	135, 195, 627, 636, 786
BsaXI	ACNNNNNCTCC	2 cut(s)	549, 579
Bsc4I	CCNNNNNNNGG	1 cut(s)	777
Bse1I	ACTGG	2 cut(s)	587, 670
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	5 cut(s)	135, 195, 627, 636, 786
BseGI	GGATG	1 cut(s)	706
BseLI	CCNNNNNNNGG	1 cut(s)	777
BseMII	CTCAG	3 cut(s)	447, 495, 656
BseNI	ACTGG	2 cut(s)	587, 670
BseRI	GAGGAG	1 cut(s)	88
BseXI	GCAGC	5 cut(s)	66, 129, 132, 665, 812
BsgI	GTGCAG	1 cut(s)	582
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	2 cut(s)	98, 676
BslI	CCNNNNNNNGG	1 cut(s)	777
BsmAI	GTCTC	2 cut(s)	175, 494
BsnI	GGCC	2 cut(s)	98, 676
Bsp143I	GATC	2 cut(s)	350, 375
BspACI	CCGC	3 cut(s)	14, 82, 95
BspANI	GGCC	2 cut(s)	98, 676
BspCNI	CTCAG	3 cut(s)	448, 496, 655
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	677
BspPI	GGATC	1 cut(s)	358
BsrI	ACTGG	2 cut(s)	587, 670
BssECI	CCNNGG	5 cut(s)	135, 195, 627, 636, 786
BssMI	GATC	2 cut(s)	350, 375
BssT1I	CCWWGG	4 cut(s)	195, 627, 636, 786
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	4 cut(s)	22, 238, 367, 522
Bst6I	CTCTTC	1 cut(s)	738
BstBAI	YACGTR	1 cut(s)	515
BstC8I	GCNNGC	1 cut(s)	903
BstDEI	CTNAG	4 cut(s)	392, 456, 504, 642
BstF5I	GGATG	1 cut(s)	706
BstFNI	CGCG	1 cut(s)	88
BstH2I	RGCGCY	2 cut(s)	512, 863
BstHHI	GCGC	4 cut(s)	28, 90, 511, 862
BstKTI	GATC	2 cut(s)	353, 378
BstMAI	GTCTC	2 cut(s)	175, 494
BstMBI	GATC	2 cut(s)	350, 375
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 34, 85, 682
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	2 cut(s)	191, 905
BstSCI	CCNGG	1 cut(s)	135
BstSNI	TACGTA	1 cut(s)	515
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	5 cut(s)	66, 129, 132, 665, 812
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
BsuI	GTATCC	1 cut(s)	835
BsuRI	GGCC	2 cut(s)	98, 676
BtsCI	GGATG	1 cut(s)	706
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	903
CaiI	CAGNNNCTG	1 cut(s)	142
CfoI	GCGC	4 cut(s)	28, 90, 511, 862
Cfr13I	GGNCC	2 cut(s)	121, 675
CseI	GACGC	2 cut(s)	94, 713
Csp6I	GTAC	1 cut(s)	569
CspCI	CAANNNNNGTGG	2 cut(s)	33, 68
CviAII	CATG	7 cut(s)	48, 130, 188, 207, 379, 431, 902
CviQI	GTAC	1 cut(s)	569
DdeI	CTNAG	4 cut(s)	392, 456, 504, 642
DpnI	GATC	2 cut(s)	352, 377
DpnII	GATC	2 cut(s)	350, 375
Eam1104I	CTCTTC	1 cut(s)	738
EarI	CTCTTC	1 cut(s)	738
Eco105I	TACGTA	1 cut(s)	515
Eco130I	CCWWGG	4 cut(s)	195, 627, 636, 786
Eco47I	GGWCC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	905
EcoRII	CCWGG	1 cut(s)	135
EcoT14I	CCWWGG	4 cut(s)	195, 627, 636, 786
EcoT22I	ATGCAT	2 cut(s)	534, 706
ErhI	CCWWGG	4 cut(s)	195, 627, 636, 786
FaeI	CATG	7 cut(s)	51, 133, 191, 210, 382, 434, 905
FatI	CATG	7 cut(s)	47, 129, 187, 206, 378, 430, 901
FauNDI	CATATG	1 cut(s)	760
Fnu4HI	GCNGC	7 cut(s)	15, 80, 96, 143, 146, 654, 801
FokI	GGATG	1 cut(s)	713
Fsp4HI	GCNGC	7 cut(s)	15, 80, 96, 143, 146, 654, 801
FspBI	CTAG	3 cut(s)	296, 732, 777
GlaI	GCGC	4 cut(s)	27, 89, 510, 861
GluI	GCNGC	7 cut(s)	15, 80, 96, 143, 146, 654, 801
HaeII	RGCGCY	2 cut(s)	512, 863
HaeIII	GGCC	2 cut(s)	98, 676
HgaI	GACGC	2 cut(s)	94, 713
HhaI	GCGC	4 cut(s)	28, 90, 511, 862
Hin1II	CATG	7 cut(s)	51, 133, 191, 210, 382, 434, 905
Hin6I	GCGC	4 cut(s)	26, 88, 509, 860
HinP1I	GCGC	4 cut(s)	26, 88, 509, 860
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HinfI	GANTC	5 cut(s)	56, 242, 269, 416, 755
HphI	GGTGA	2 cut(s)	143, 764
Hpy166II	GTNNAC	2 cut(s)	518, 580
Hpy188I	TCNGA	6 cut(s)	61, 111, 491, 645, 729, 885
Hpy188III	TCNNGA	2 cut(s)	246, 263
Hpy8I	GTNNAC	2 cut(s)	518, 580
HpyAV	CCTTC	4 cut(s)	112, 112, 592, 880
HpyCH4III	ACNGT	4 cut(s)	22, 238, 367, 522
HpyCH4IV	ACGT	3 cut(s)	322, 514, 914
HpyCH4V	TGCA	8 cut(s)	37, 532, 563, 653, 685, 704, 800, 905
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 34, 85, 682
HpyF3I	CTNAG	4 cut(s)	392, 456, 504, 642
HpySE526I	ACGT	3 cut(s)	322, 514, 914
Hsp92II	CATG	7 cut(s)	51, 133, 191, 210, 382, 434, 905
HspAI	GCGC	4 cut(s)	26, 88, 509, 860
Kzo9I	GATC	2 cut(s)	350, 375
LmnI	GCTCC	1 cut(s)	427
Lsp1109I	GCAGC	5 cut(s)	66, 129, 132, 665, 812
LweI	GCATC	4 cut(s)	519, 541, 691, 694
MaeI	CTAG	3 cut(s)	296, 732, 777
MaeII	ACGT	3 cut(s)	322, 514, 914
MalI	GATC	2 cut(s)	352, 377
MboI	GATC	2 cut(s)	350, 375
MboII	GAAGA	4 cut(s)	295, 607, 755, 902
MflI	RGATCY	1 cut(s)	350
MluCI	AATT	5 cut(s)	39, 250, 648, 806, 870
MmeI	TCCRAC	1 cut(s)	84
Mph1103I	ATGCAT	2 cut(s)	534, 706
MroXI	GAANNNNTTC	1 cut(s)	667
MslI	CAYNNNNRTG	1 cut(s)	900
MspA1I	CMGCKG	1 cut(s)	656
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	4 cut(s)	23, 34, 85, 682
NdeI	CATATG	1 cut(s)	760
NdeII	GATC	2 cut(s)	350, 375
NlaIII	CATG	7 cut(s)	51, 133, 191, 210, 382, 434, 905
NlaIV	GGNNCC	1 cut(s)	677
NmeAIII	GCCGAG	3 cut(s)	54, 71, 652
NsiI	ATGCAT	2 cut(s)	534, 706
NspI	RCATGY	2 cut(s)	191, 905
PaeI	GCATGC	1 cut(s)	905
PciI	ACATGT	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	667
PfeI	GAWTC	5 cut(s)	56, 242, 269, 416, 755
PkrI	GCNGC	7 cut(s)	16, 81, 97, 144, 147, 655, 802
Ppu21I	YACGTR	1 cut(s)	515
PscI	ACATGT	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	677
PspPI	GGNCC	2 cut(s)	121, 675
PstNI	CAGNNNCTG	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	350
PvuII	CAGCTG	1 cut(s)	656
RsaI	GTAC	1 cut(s)	570
RsaNI	GTAC	1 cut(s)	569
RseI	CAYNNNNRTG	1 cut(s)	900
SatI	GCNGC	7 cut(s)	15, 80, 96, 143, 146, 654, 801
Sau3AI	GATC	2 cut(s)	350, 375
Sau96I	GGNCC	2 cut(s)	121, 675
ScrFI	CCNGG	1 cut(s)	137
SfaNI	GCATC	4 cut(s)	519, 541, 691, 694
SinI	GGWCC	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	900
SnaBI	TACGTA	1 cut(s)	515
SpeI	ACTAGT	1 cut(s)	731
SphI	GCATGC	1 cut(s)	905
Sse9I	AATT	5 cut(s)	39, 250, 648, 806, 870
SsiI	CCGC	3 cut(s)	14, 82, 95
SspI	AATATT	1 cut(s)	796
SspMI	CTAG	3 cut(s)	296, 732, 777
StyD4I	CCNGG	1 cut(s)	135
StyI	CCWWGG	4 cut(s)	195, 627, 636, 786
TaaI	ACNGT	4 cut(s)	22, 238, 367, 522
TaiI	ACGT	3 cut(s)	325, 517, 917
TaqI	TCGA	4 cut(s)	178, 233, 264, 303
TaqII	GACCGA	1 cut(s)	138
TasI	AATT	5 cut(s)	39, 250, 648, 806, 870
TauI	GCSGC	2 cut(s)	17, 98
TfiI	GAWTC	5 cut(s)	56, 242, 269, 416, 755
TscAI	CASTG	1 cut(s)	243
TseI	GCWGC	5 cut(s)	79, 142, 145, 653, 800
TspDTI	ATGAA	8 cut(s)	195, 245, 282, 390, 394, 408, 608, 747
TspGWI	ACGGA	1 cut(s)	439
TspRI	CASTG	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	121
XapI	RAATTY	2 cut(s)	39, 250
XceI	RCATGY	2 cut(s)	191, 905
XmnI	GAANNNNTTC	1 cut(s)	667
XspI	CTAG	3 cut(s)	296, 732, 777
Zsp2I	ATGCAT	2 cut(s)	534, 706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.