Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004315

Physical Location & Seq

Genomic Coordinates Reverse (-)

28800273 .. 28801207

Gene Structure 935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48952

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGACTTTTCATTCCATAGTCATTTACATTTATTCAACTTCACACATTTTTATTAAATTATTCATCCACAAATTTTATTTTCAGACCGAGGCCCTACGAAAACTGTCTATGATGCAACGTCATGTTGTCTCTACCGGCGGAGGTGCAGTAGTTCGGCCGGTCAACTGGAAATGTATGCAGAAGGGGATTAGTGTATGGTTAGATGTACCCTTGGAAGCCTTGGCCCAGAGAATTGCAGACGTGGGAACTGGTTCTCGTCCCCTTTTGCATCAAGGGCCCGGGGATGCGTACAGTAAAACATTTATGCGTCTATCTAGTCTTTTCAAAGAGAGAGGTGATGCATATGCCAATGCCAATGCTCGGGTTTCTTTGCAAAATATTGCAGCCAAAATGGGTTATAGGGATGTATCCAATCTCTCGCCTACATCTATTGCTCTTGAGGCACTTCAACAAATTGAATGCTTTCTGGAGGAAGAGAGAGGCCGTGCCTGTGTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004765 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019438 GO:0019632 GO:0019752 GO:0032787 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

SKI

Protein Analysis

166

Amino Acids

18.66

Weight (kDa)

9.4

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SKI	PF01202	29 - 130	5e-18	Shikimate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT4G39540 AT4G39540 AT4G39540
malus_domestica	MD01G1019500.v1.1 MD15G1332900.v1.1
prunus_persica	Prupe.6G172800_v2.0.a1 Prupe.6G172800_v2.0.a1
pyrus_communis	pycom01g04900 pycom15g29260
rosa_chinensis	RchiOBHm_Chr2g0116491 RchiOBHm_Chr2g0116501 RchiOBHm_Chr2g0116521 RchiOBHm_Chr6g0259311
rosa_laevigata	RLG00000018276 RLG00000018279
rosa_multiflora	Rmu_sc0004191.1_g000047 Rmu_sc0018630.1_g000001 Rmu_ssc0000050.1_g000062
rosa_roxburghii	Rroxscaffold_2G00127140 Rroxscaffold_2G00127150
rosa_rugosa	Rorug02G0207100 Rorug05G0587200
rosa_samantha	Rh2CG268700
rosa_wichuraiana	Rw2G020620 Rw2G020630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	138
AcoI	YGGCCR	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	71
AfaI	GTAC	2 cut(s)	207, 290
AfiI	CCNNNNNNNGG	1 cut(s)	360
AgsI	TTSAA	4 cut(s)	36, 325, 449, 458
AjiI	CACGTC	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	133
Ama87I	CYCGRG	2 cut(s)	278, 360
AoxI	GGCC	5 cut(s)	90, 155, 222, 275, 481
ApaI	GGGCCC	1 cut(s)	279
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	1 cut(s)	71
Asp700I	GAANNNNTTC	2 cut(s)	250, 462
AspS9I	GGNCC	4 cut(s)	91, 223, 275, 276
AsuC2I	CCSGG	2 cut(s)	279, 280
AsuHPI	GGTGA	1 cut(s)	347
AvaI	CYCGRG	2 cut(s)	278, 360
BaeGI	GKGCMC	1 cut(s)	279
BanII	GRGCYC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	395
BceAI	ACGGC	1 cut(s)	468
BciVI	GTATCC	1 cut(s)	418
BcnI	CCSGG	2 cut(s)	279, 280
BcoDI	GTCTC	1 cut(s)	133
BfaI	CTAG	1 cut(s)	315
BfuI	GTATCC	1 cut(s)	418
BisI	GCNGC	1 cut(s)	384
BlsI	GCNGC	1 cut(s)	385
Bme1390I	CCNGG	2 cut(s)	279, 280
BmeT110I	CYCGRG	2 cut(s)	278, 360
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	4 cut(s)	91, 223, 275, 276
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	2 cut(s)	279, 280
BmsI	GCATC	4 cut(s)	102, 274, 277, 328
BpmI	CTGGAG	1 cut(s)	488
BpuEI	CTTGAG	1 cut(s)	458
BpuMI	CCSGG	2 cut(s)	279, 280
BsaJI	CCNNGG	5 cut(s)	87, 210, 219, 278, 279
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
Bse118I	RCCGGY	2 cut(s)	134, 157
Bse1I	ACTGG	2 cut(s)	170, 253
BseDI	CCNNGG	5 cut(s)	87, 210, 219, 278, 279
BseGI	GGATG	3 cut(s)	63, 289, 409
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseNI	ACTGG	2 cut(s)	170, 253
BseSI	GKGCMC	1 cut(s)	279
BseX3I	CGGCCG	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	395
BsgI	GTGCAG	1 cut(s)	165
Bsh1285I	CGRYCG	1 cut(s)	158
BshFI	GGCC	5 cut(s)	92, 157, 224, 277, 483
BsiEI	CGRYCG	1 cut(s)	158
BsiHKCI	CYCGRG	2 cut(s)	278, 360
BsiSI	CCGG	3 cut(s)	135, 158, 279
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	360
BsmAI	GTCTC	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	243
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	5 cut(s)	92, 157, 224, 277, 483
BsoBI	CYCGRG	2 cut(s)	278, 360
Bsp120I	GGGCCC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	279
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	5 cut(s)	92, 157, 224, 277, 483
BspLI	GGNNCC	1 cut(s)	277
BsrFI	RCCGGY	2 cut(s)	134, 157
BsrI	ACTGG	2 cut(s)	170, 253
BssAI	RCCGGY	2 cut(s)	134, 157
BssECI	CCNNGG	5 cut(s)	87, 210, 219, 278, 279
BssT1I	CCWWGG	2 cut(s)	210, 219
Bst4CI	ACNGT	2 cut(s)	105, 293
Bst6I	CTCTTC	1 cut(s)	468
BstF5I	GGATG	3 cut(s)	63, 289, 409
BstMAI	GTCTC	1 cut(s)	133
BstMCI	CGRYCG	1 cut(s)	158
BstMWI	GCNNNNNNNGC	2 cut(s)	274, 440
BstSCI	CCNGG	2 cut(s)	277, 278
BstSLI	GKGCMC	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	395
BstZI	CGGCCG	1 cut(s)	155
BsuI	GTATCC	1 cut(s)	418
BsuRI	GGCC	5 cut(s)	92, 157, 224, 277, 483
BtrI	CACGTC	1 cut(s)	241
BtsCI	GGATG	3 cut(s)	63, 289, 409
Cfr10I	RCCGGY	2 cut(s)	134, 157
Cfr13I	GGNCC	4 cut(s)	91, 223, 275, 276
Cfr9I	CCCGGG	1 cut(s)	278
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	2 cut(s)	206, 289
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	7 cut(s)	92, 157, 218, 224, 277, 386, 483
CviKI_1	RGCY	7 cut(s)	92, 157, 218, 224, 277, 386, 483
CviQI	GTAC	2 cut(s)	206, 289
EaeI	YGGCCR	1 cut(s)	155
EagI	CGGCCG	1 cut(s)	155
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
EciI	GGCGGA	1 cut(s)	153
EclXI	CGGCCG	1 cut(s)	155
Eco130I	CCWWGG	2 cut(s)	210, 219
Eco24I	GRGCYC	1 cut(s)	279
Eco52I	CGGCCG	1 cut(s)	155
Eco88I	CYCGRG	2 cut(s)	278, 360
EcoO109I	RGGNCCY	2 cut(s)	91, 275
EcoT14I	CCWWGG	2 cut(s)	210, 219
EcoT22I	ATGCAT	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	279
ErhI	CCWWGG	2 cut(s)	210, 219
FaeI	CATG	1 cut(s)	125
FaiI	YATR	9 cut(s)	17, 110, 123, 176, 196, 305, 343, 345, 399
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	1 cut(s)	121
FauNDI	CATATG	1 cut(s)	343
Fnu4HI	GCNGC	1 cut(s)	384
FokI	GGATG	3 cut(s)	50, 296, 416
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	384
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	1 cut(s)	384
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	5 cut(s)	92, 157, 224, 277, 483
HapII	CCGG	3 cut(s)	135, 158, 279
HgaI	GACGC	1 cut(s)	296
Hin1II	CATG	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HpaII	CCGG	3 cut(s)	135, 158, 279
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	2 cut(s)	437, 467
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	2 cut(s)	105, 293
HpyCH4IV	ACGT	2 cut(s)	118, 240
HpyCH4V	TGCA	8 cut(s)	115, 146, 178, 236, 268, 341, 373, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	274, 440
HpySE526I	ACGT	2 cut(s)	118, 240
Hsp92II	CATG	1 cut(s)	125
LpnPI	CCDG	7 cut(s)	148, 151, 171, 234, 239, 292, 452
Lsp1109I	GCAGC	1 cut(s)	395
LweI	GCATC	4 cut(s)	102, 274, 277, 328
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	2 cut(s)	118, 240
MboII	GAAGA	1 cut(s)	485
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	4 cut(s)	56, 71, 231, 453
MnlI	CCTC	6 cut(s)	82, 134, 326, 433, 463, 473
Mph1103I	ATGCAT	1 cut(s)	343
MroXI	GAANNNNTTC	2 cut(s)	250, 462
MseI	TTAA	1 cut(s)	54
MspI	CCGG	3 cut(s)	135, 158, 279
MspR9I	CCNGG	2 cut(s)	279, 280
Mva1269I	GAATGC	1 cut(s)	464
MwoI	GCNNNNNNNGC	2 cut(s)	274, 440
NciI	CCSGG	2 cut(s)	279, 280
NdeI	CATATG	1 cut(s)	343
NlaIII	CATG	1 cut(s)	125
NlaIV	GGNNCC	1 cut(s)	277
NsiI	ATGCAT	1 cut(s)	343
PctI	GAATGC	1 cut(s)	464
PdmI	GAANNNNTTC	2 cut(s)	250, 462
PkrI	GCNGC	1 cut(s)	385
PspN4I	GGNNCC	1 cut(s)	277
PspOMI	GGGCCC	1 cut(s)	275
PspPI	GGNCC	4 cut(s)	91, 223, 275, 276
RsaI	GTAC	2 cut(s)	207, 290
RsaNI	GTAC	2 cut(s)	206, 289
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	1 cut(s)	384
Sau96I	GGNCC	4 cut(s)	91, 223, 275, 276
ScrFI	CCNGG	2 cut(s)	279, 280
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	4 cut(s)	121, 145, 243, 337
SfaNI	GCATC	4 cut(s)	102, 274, 277, 328
SmaI	CCCGGG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	4 cut(s)	56, 71, 231, 453
SsiI	CCGC	1 cut(s)	138
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	2 cut(s)	277, 278
StyI	CCWWGG	2 cut(s)	210, 219
TaaI	ACNGT	2 cut(s)	105, 293
TaiI	ACGT	2 cut(s)	121, 243
TaqII	GACCGA	1 cut(s)	101
TasI	AATT	4 cut(s)	56, 71, 231, 453
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TseI	GCWGC	1 cut(s)	383
TspDTI	ATGAA	1 cut(s)	52
TspMI	CCCGGG	1 cut(s)	278
XapI	RAATTY	1 cut(s)	71
XmaI	CCCGGG	1 cut(s)	278
XmnI	GAANNNNTTC	2 cut(s)	250, 462
XspI	CTAG	1 cut(s)	315
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.