Shikimate kinase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT4G39540 AT4G39540 AT4G39540 |
| malus_domestica | MD01G1019500.v1.1 MD15G1332900.v1.1 |
| prunus_persica | Prupe.6G172800_v2.0.a1 Prupe.6G172800_v2.0.a1 |
| pyrus_communis | pycom01g04900 pycom15g29260 |
| rosa_chinensis | RchiOBHm_Chr2g0116491 RchiOBHm_Chr2g0116501 RchiOBHm_Chr2g0116521 RchiOBHm_Chr6g0259311 |
| rosa_laevigata | RLG00000018276 RLG00000018279 |
| rosa_multiflora | Rmu_sc0004191.1_g000047 Rmu_sc0018630.1_g000001 Rmu_ssc0000050.1_g000062 |
| rosa_roxburghii | Rroxscaffold_2G00127140 Rroxscaffold_2G00127150 |
| rosa_rugosa | Rorug02G0207100 Rorug05G0587200 |
| rosa_samantha | Rh2CG268700 |
| rosa_wichuraiana | Rw2G020620 Rw2G020630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 75 |
| AcsI | RAATTY | 1 cut(s) | 47 |
| AcuI | CTGAAG | 1 cut(s) | 350 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 250 |
| AgsI | TTSAA | 1 cut(s) | 258 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 238, 270 |
| AluBI | AGCT | 2 cut(s) | 93, 114 |
| AluI | AGCT | 2 cut(s) | 93, 114 |
| ApeKI | GCWGC | 1 cut(s) | 90 |
| ApoI | RAATTY | 1 cut(s) | 47 |
| AspLEI | GCGC | 2 cut(s) | 76, 372 |
| AsuC2I | CCSGG | 1 cut(s) | 251 |
| BbvI | GCAGC | 1 cut(s) | 102 |
| BccI | CCATC | 1 cut(s) | 231 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 117, 151 |
| BcnI | CCSGG | 1 cut(s) | 251 |
| BfoI | RGCGCY | 1 cut(s) | 373 |
| BisI | GCNGC | 1 cut(s) | 91 |
| BlsI | GCNGC | 1 cut(s) | 92 |
| Bme1390I | CCNGG | 1 cut(s) | 251 |
| BmrFI | CCNGG | 1 cut(s) | 251 |
| BmsI | GCATC | 1 cut(s) | 190 |
| BpuMI | CCSGG | 1 cut(s) | 251 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 187, 217 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 250 |
| BseGI | GGATG | 2 cut(s) | 181, 223 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 250 |
| BseXI | GCAGC | 1 cut(s) | 102 |
| BsiSI | CCGG | 1 cut(s) | 251 |
| BslFI | GGGAC | 1 cut(s) | 325 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 250 |
| BsmFI | GGGAC | 1 cut(s) | 325 |
| BsmI | GAATGC | 1 cut(s) | 123 |
| Bsp143I | GATC | 1 cut(s) | 151 |
| BssMI | GATC | 1 cut(s) | 151 |
| Bst4CI | ACNGT | 1 cut(s) | 7 |
| Bst6I | CTCTTC | 2 cut(s) | 234, 326 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 187 |
| BstF5I | GGATG | 2 cut(s) | 181, 223 |
| BstH2I | RGCGCY | 1 cut(s) | 373 |
| BstHHI | GCGC | 2 cut(s) | 76, 372 |
| BstKTI | GATC | 1 cut(s) | 154 |
| BstMBI | GATC | 1 cut(s) | 151 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 71, 120, 187 |
| BstSCI | CCNGG | 1 cut(s) | 249 |
| BstV1I | GCAGC | 1 cut(s) | 102 |
| BtsCI | GGATG | 2 cut(s) | 181, 223 |
| BtsIMutI | CAGTG | 1 cut(s) | 288 |
| CfoI | GCGC | 2 cut(s) | 76, 372 |
| CviAII | CATG | 2 cut(s) | 187, 218 |
| CviJI | RGCY | 5 cut(s) | 93, 114, 201, 254, 355 |
| CviKI_1 | RGCY | 5 cut(s) | 93, 114, 201, 254, 355 |
| DpnI | GATC | 1 cut(s) | 153 |
| DpnII | GATC | 1 cut(s) | 151 |
| Eam1104I | CTCTTC | 2 cut(s) | 234, 326 |
| EarI | CTCTTC | 2 cut(s) | 234, 326 |
| Eco57I | CTGAAG | 1 cut(s) | 350 |
| FaeI | CATG | 2 cut(s) | 190, 221 |
| FaiI | YATR | 8 cut(s) | 170, 188, 219, 303, 358, 377, 379, 400 |
| FaqI | GGGAC | 1 cut(s) | 325 |
| FatI | CATG | 2 cut(s) | 186, 217 |
| Fnu4HI | GCNGC | 1 cut(s) | 91 |
| FokI | GGATG | 2 cut(s) | 168, 210 |
| Fsp4HI | GCNGC | 1 cut(s) | 91 |
| FspI | TGCGCA | 1 cut(s) | 75 |
| GlaI | GCGC | 2 cut(s) | 75, 371 |
| GluI | GCNGC | 1 cut(s) | 91 |
| HaeII | RGCGCY | 1 cut(s) | 373 |
| HapII | CCGG | 1 cut(s) | 251 |
| HhaI | GCGC | 2 cut(s) | 76, 372 |
| Hin1II | CATG | 2 cut(s) | 190, 221 |
| Hin6I | GCGC | 2 cut(s) | 74, 370 |
| HinP1I | GCGC | 2 cut(s) | 74, 370 |
| HinfI | GANTC | 2 cut(s) | 287, 317 |
| HpaII | CCGG | 1 cut(s) | 251 |
| Hpy188I | TCNGA | 2 cut(s) | 151, 330 |
| Hpy188III | TCNNGA | 1 cut(s) | 291 |
| HpyCH4III | ACNGT | 1 cut(s) | 7 |
| HpyCH4V | TGCA | 2 cut(s) | 138, 190 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 71, 120, 187 |
| Hsp92II | CATG | 2 cut(s) | 190, 221 |
| HspAI | GCGC | 2 cut(s) | 74, 370 |
| Kzo9I | GATC | 1 cut(s) | 151 |
| LmnI | GCTCC | 1 cut(s) | 119 |
| LpnPI | CCDG | 3 cut(s) | 173, 264, 276 |
| Lsp1109I | GCAGC | 1 cut(s) | 102 |
| LweI | GCATC | 1 cut(s) | 190 |
| MalI | GATC | 1 cut(s) | 153 |
| MboI | GATC | 1 cut(s) | 151 |
| MboII | GAAGA | 4 cut(s) | 88, 146, 221, 343 |
| MluCI | AATT | 1 cut(s) | 47 |
| MnlI | CCTC | 5 cut(s) | 157, 213, 217, 237, 251 |
| MseI | TTAA | 1 cut(s) | 362 |
| MslI | CAYNNNNRTG | 1 cut(s) | 312 |
| MspI | CCGG | 1 cut(s) | 251 |
| MspR9I | CCNGG | 1 cut(s) | 251 |
| Mva1269I | GAATGC | 1 cut(s) | 123 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 71, 120, 187 |
| NciI | CCSGG | 1 cut(s) | 251 |
| NdeII | GATC | 1 cut(s) | 151 |
| NlaIII | CATG | 2 cut(s) | 190, 221 |
| NsbI | TGCGCA | 1 cut(s) | 75 |
| PctI | GAATGC | 1 cut(s) | 123 |
| PfeI | GAWTC | 2 cut(s) | 287, 317 |
| PkrI | GCNGC | 1 cut(s) | 92 |
| RseI | CAYNNNNRTG | 1 cut(s) | 312 |
| SaqAI | TTAA | 1 cut(s) | 362 |
| SatI | GCNGC | 1 cut(s) | 91 |
| Sau3AI | GATC | 1 cut(s) | 151 |
| ScrFI | CCNGG | 1 cut(s) | 251 |
| SetI | ASST | 3 cut(s) | 95, 116, 277 |
| SfaNI | GCATC | 1 cut(s) | 190 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 312 |
| Sse9I | AATT | 1 cut(s) | 47 |
| SspI | AATATT | 1 cut(s) | 262 |
| StyD4I | CCNGG | 1 cut(s) | 249 |
| TaaI | ACNGT | 1 cut(s) | 7 |
| TaqI | TCGA | 1 cut(s) | 127 |
| TasI | AATT | 1 cut(s) | 47 |
| TfiI | GAWTC | 2 cut(s) | 287, 317 |
| Tru1I | TTAA | 1 cut(s) | 362 |
| Tru9I | TTAA | 1 cut(s) | 362 |
| TscAI | CASTG | 1 cut(s) | 288 |
| TseI | GCWGC | 1 cut(s) | 90 |
| TspDTI | ATGAA | 2 cut(s) | 267, 330 |
| TspRI | CASTG | 1 cut(s) | 288 |
| XapI | RAATTY | 1 cut(s) | 47 |