Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0004315

Physical Location & Seq

Genomic Coordinates Reverse (-)

8121144 .. 8125214

Gene Structure 4071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1019500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAGTATGGAGGCGGCTACGGTTGCGCCGAGATTGCAAATTTCAACATGGATGGTGGATTCCGACAGGGTTGCGAGGAGGCGGCGGCCGAAGAGCACGTCGGCCGCCTTCTCTCGGAGATTAAAGGACCAAAACATGACCCAGGTGCTTGTTGCAGCTGCAGCCGCTCACCTACCAACCTCAAAAGTCTCTAATCGACAACTACATGTCGCTTTGGAGGTTTCGTGCTCTTACAACAACTTTCCAACTTCAACAGTGGAATCTGGAAACTTTCATACTTCTGATCAATCACTGGTTTTGAAGAATAAGGCACTAGCAATCGAGCCATATTTGAATCGACGTTGTATATATCTAGTTGGTATGATGGGATCTGGGAAAACAACCGTTGGCAAGATTATGGCGCAATCACTTAGTTATTCGTTCATTGATAGTGATTCATTGGTGGAGCATGAAGTTGGTGGAACTTCCGTCGCTGAAATTTTCAAGCTCTATGGAGAGGGCTTTTTCAGAGATAAGGAGACTGAGGCGCTACGTAAACTATCTTTGATGAATCGTCTAGTTGTTTCTACGGGTGGAGGTGCAGTTGTACGCCCTGTCAACTGGAAGTGTATGAAGAAGGGGATTAGTGTCTGGTTAGATGTTCCCTTGGAAGCCTTGGCTCAGAGAATTGCAGCTGTGGGAACTGGCTCTCGCCCCCTTTTGCATCACGGGTCAGGGGATGCATACAGAAAAACTTATATGCGTCTGACTAGTCTTTTTGAAGAGAGAGGTGATTCATATGCCAATGCCAATGCTAGGGTTTCCTTGGAAAATATTGCAGCCAAATTGGGCTGTAGAGATGTATCCAATCTCACACCTACTGCCATTGTGATTGAGGCGCTTGAACAAATTGAAGGCTATCTGAAGGAAGAACATAGACATGCACATATTACGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004765 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019438 GO:0019632 GO:0019752 GO:0032787 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

SKI

Protein Analysis

313

Amino Acids

34.39

Weight (kDa)

9.41

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_18	PF13238	116 - 227	4e-07	AAA domain
SKI	PF01202	122 - 275	7.6e-42	Shikimate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT4G39540 AT4G39540 AT4G39540
malus_domestica	MD01G1019500.v1.1 MD15G1332900.v1.1
prunus_persica	Prupe.6G172800_v2.0.a1 Prupe.6G172800_v2.0.a1
pyrus_communis	pycom01g04900 pycom15g29260
rosa_chinensis	RchiOBHm_Chr2g0116491 RchiOBHm_Chr2g0116501 RchiOBHm_Chr2g0116521 RchiOBHm_Chr6g0259311
rosa_laevigata	RLG00000018276 RLG00000018279
rosa_multiflora	Rmu_sc0004191.1_g000047 Rmu_sc0018630.1_g000001 Rmu_ssc0000050.1_g000062
rosa_roxburghii	Rroxscaffold_2G00127140 Rroxscaffold_2G00127150
rosa_rugosa	Rorug02G0207100 Rorug05G0587200
rosa_samantha	Rh2CG268700
rosa_wichuraiana	Rw2G020620 Rw2G020630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	167
AciI	CCGC	5 cut(s)	14, 82, 85, 105, 165
AclWI	GGATC	1 cut(s)	376
AcoI	YGGCCR	2 cut(s)	86, 102
AcsI	RAATTY	2 cut(s)	39, 477
AcuI	CTGAAG	1 cut(s)	923
AfaI	GTAC	1 cut(s)	588
AfiI	CCNNNNNNNGG	2 cut(s)	114, 795
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	8 cut(s)	45, 252, 301, 334, 484, 761, 884, 893
AhlI	ACTAGT	1 cut(s)	749
AjiI	CACGTC	1 cut(s)	99
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	3 cut(s)	158, 487, 674
AluI	AGCT	3 cut(s)	158, 487, 674
Alw21I	GWGCWC	2 cut(s)	98, 230
Alw26I	GTCTC	2 cut(s)	193, 512
AlwI	GGATC	1 cut(s)	376
AoxI	GGCC	2 cut(s)	86, 102
ApeKI	GCWGC	5 cut(s)	155, 158, 161, 671, 818
ApoI	RAATTY	2 cut(s)	39, 477
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AspLEI	GCGC	4 cut(s)	28, 403, 529, 880
AspS9I	GGNCC	1 cut(s)	127
AsuHPI	GGTGA	2 cut(s)	161, 782
AvaII	GGWCC	1 cut(s)	127
Bbv12I	GWGCWC	2 cut(s)	98, 230
BbvI	GCAGC	5 cut(s)	145, 167, 173, 683, 830
BccI	CCATC	2 cut(s)	46, 358
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	1 cut(s)	143
BciVI	GTATCC	1 cut(s)	853
BclI	TGATCA	1 cut(s)	283
BcoDI	GTCTC	2 cut(s)	193, 512
BcuI	ACTAGT	1 cut(s)	749
BfaI	CTAG	5 cut(s)	314, 353, 557, 750, 795
BfmI	CTRYAG	2 cut(s)	159, 832
BfoI	RGCGCY	2 cut(s)	530, 881
BfuI	GTATCC	1 cut(s)	853
Bme1390I	CCNGG	1 cut(s)	143
Bme18I	GGWCC	1 cut(s)	127
BmgBI	CACGTC	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	143
BmsI	GCATC	2 cut(s)	709, 712
BsaAI	YACGTR	1 cut(s)	533
BsaJI	CCNNGG	4 cut(s)	141, 645, 654, 804
BsaXI	ACNNNNNCTCC	4 cut(s)	209, 239, 567, 597
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 795
Bse1I	ACTGG	3 cut(s)	297, 605, 688
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	4 cut(s)	141, 645, 654, 804
BseGI	GGATG	2 cut(s)	57, 724
BseLI	CCNNNNNNNGG	2 cut(s)	114, 795
BseMII	CTCAG	2 cut(s)	513, 674
BseNI	ACTGG	3 cut(s)	297, 605, 688
BseRI	GAGGAG	1 cut(s)	91
BseX3I	CGGCCG	2 cut(s)	86, 102
BseXI	GCAGC	5 cut(s)	145, 167, 173, 683, 830
BsgI	GTGCAG	1 cut(s)	600
Bsh1285I	CGRYCG	2 cut(s)	89, 105
BshFI	GGCC	2 cut(s)	88, 104
BsiEI	CGRYCG	2 cut(s)	89, 105
BsiHKAI	GWGCWC	2 cut(s)	98, 230
BslI	CCNNNNNNNGG	2 cut(s)	114, 795
BsmAI	GTCTC	2 cut(s)	193, 512
BsnI	GGCC	2 cut(s)	88, 104
Bsp1286I	GDGCHC	2 cut(s)	98, 230
Bsp143I	GATC	2 cut(s)	283, 368
BspACI	CCGC	5 cut(s)	14, 82, 85, 105, 165
BspANI	GGCC	2 cut(s)	88, 104
BspCNI	CTCAG	2 cut(s)	514, 673
BspMAI	CTGCAG	1 cut(s)	163
BspPI	GGATC	1 cut(s)	376
BspQI	GCTCTTC	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	167
BsrI	ACTGG	3 cut(s)	297, 605, 688
BssECI	CCNNGG	4 cut(s)	141, 645, 654, 804
BssMI	GATC	2 cut(s)	283, 368
BssT1I	CCWWGG	3 cut(s)	645, 654, 804
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	3 cut(s)	22, 256, 385
Bst6I	CTCTTC	2 cut(s)	86, 756
BstBAI	YACGTR	1 cut(s)	533
BstDEI	CTNAG	3 cut(s)	410, 522, 660
BstF5I	GGATG	2 cut(s)	57, 724
BstH2I	RGCGCY	2 cut(s)	530, 881
BstHHI	GCGC	4 cut(s)	28, 403, 529, 880
BstKTI	GATC	2 cut(s)	286, 371
BstMAI	GTCTC	2 cut(s)	193, 512
BstMBI	GATC	2 cut(s)	283, 368
BstMCI	CGRYCG	2 cut(s)	89, 105
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 34, 161, 164
BstNI	CCWGG	1 cut(s)	143
BstNSI	RCATGY	2 cut(s)	209, 923
BstSCI	CCNGG	1 cut(s)	141
BstSFI	CTRYAG	2 cut(s)	159, 832
BstSNI	TACGTA	1 cut(s)	533
BstV1I	GCAGC	5 cut(s)	145, 167, 173, 683, 830
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
BstZI	CGGCCG	2 cut(s)	86, 102
BsuI	GTATCC	1 cut(s)	853
BsuRI	GGCC	2 cut(s)	88, 104
BtrI	CACGTC	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	57, 724
BtsIMutI	CAGTG	2 cut(s)	261, 290
CfoI	GCGC	4 cut(s)	28, 403, 529, 880
Cfr13I	GGNCC	1 cut(s)	127
CseI	GACGC	1 cut(s)	731
Csp6I	GTAC	1 cut(s)	587
CviAII	CATG	5 cut(s)	48, 136, 206, 449, 920
CviQI	GTAC	1 cut(s)	587
DdeI	CTNAG	3 cut(s)	410, 522, 660
DpnI	GATC	2 cut(s)	285, 370
DpnII	GATC	2 cut(s)	283, 368
EaeI	YGGCCR	2 cut(s)	86, 102
EagI	CGGCCG	2 cut(s)	86, 102
Eam1104I	CTCTTC	2 cut(s)	86, 756
EarI	CTCTTC	2 cut(s)	86, 756
EclXI	CGGCCG	2 cut(s)	86, 102
Eco105I	TACGTA	1 cut(s)	533
Eco130I	CCWWGG	3 cut(s)	645, 654, 804
Eco47I	GGWCC	1 cut(s)	127
Eco52I	CGGCCG	2 cut(s)	86, 102
Eco57I	CTGAAG	1 cut(s)	923
EcoRII	CCWGG	1 cut(s)	141
EcoT14I	CCWWGG	3 cut(s)	645, 654, 804
EcoT22I	ATGCAT	1 cut(s)	724
ErhI	CCWWGG	3 cut(s)	645, 654, 804
FaeI	CATG	5 cut(s)	51, 139, 209, 452, 923
FatI	CATG	5 cut(s)	47, 135, 205, 448, 919
FauNDI	CATATG	1 cut(s)	778
FbaI	TGATCA	1 cut(s)	283
FokI	GGATG	2 cut(s)	64, 731
FspBI	CTAG	5 cut(s)	314, 353, 557, 750, 795
GlaI	GCGC	4 cut(s)	27, 402, 528, 879
HaeII	RGCGCY	2 cut(s)	530, 881
HaeIII	GGCC	2 cut(s)	88, 104
HgaI	GACGC	1 cut(s)	731
HhaI	GCGC	4 cut(s)	28, 403, 529, 880
Hin1II	CATG	5 cut(s)	51, 139, 209, 452, 923
Hin6I	GCGC	4 cut(s)	26, 401, 527, 878
HinP1I	GCGC	4 cut(s)	26, 401, 527, 878
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HinfI	GANTC	6 cut(s)	59, 260, 334, 434, 550, 773
HphI	GGTGA	2 cut(s)	161, 782
Hpy166II	GTNNAC	2 cut(s)	536, 598
Hpy188I	TCNGA	7 cut(s)	64, 117, 283, 509, 663, 747, 903
Hpy188III	TCNNGA	1 cut(s)	264
Hpy8I	GTNNAC	2 cut(s)	536, 598
Hpy99I	CGWCG	3 cut(s)	103, 342, 473
HpyAV	CCTTC	4 cut(s)	118, 610, 887, 898
HpyCH4III	ACNGT	3 cut(s)	22, 256, 385
HpyCH4IV	ACGT	4 cut(s)	98, 340, 532, 932
HpyCH4V	TGCA	9 cut(s)	37, 155, 161, 581, 671, 703, 722, 818, 923
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 34, 161, 164
HpyF3I	CTNAG	3 cut(s)	410, 522, 660
HpySE526I	ACGT	4 cut(s)	98, 340, 532, 932
Hsp92II	CATG	5 cut(s)	51, 139, 209, 452, 923
HspAI	GCGC	4 cut(s)	26, 401, 527, 878
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	283, 368
LguI	GCTCTTC	1 cut(s)	86
LmnI	GCTCC	1 cut(s)	445
Lsp1109I	GCAGC	5 cut(s)	145, 167, 173, 683, 830
LweI	GCATC	2 cut(s)	709, 712
MaeI	CTAG	5 cut(s)	314, 353, 557, 750, 795
MaeII	ACGT	4 cut(s)	98, 340, 532, 932
MalI	GATC	2 cut(s)	285, 370
MbiI	CCGCTC	1 cut(s)	167
MboI	GATC	2 cut(s)	283, 368
MboII	GAAGA	5 cut(s)	103, 313, 625, 773, 920
MflI	RGATCY	1 cut(s)	368
MhlI	GDGCHC	2 cut(s)	98, 230
MluCI	AATT	5 cut(s)	39, 477, 666, 824, 888
MmeI	TCCRAC	2 cut(s)	87, 269
Mph1103I	ATGCAT	1 cut(s)	724
MseI	TTAA	1 cut(s)	122
MslI	CAYNNNNRTG	1 cut(s)	918
MspA1I	CMGCKG	2 cut(s)	158, 674
MspR9I	CCNGG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	4 cut(s)	23, 34, 161, 164
NdeI	CATATG	1 cut(s)	778
NdeII	GATC	2 cut(s)	283, 368
NlaIII	CATG	5 cut(s)	51, 139, 209, 452, 923
NmeAIII	GCCGAG	1 cut(s)	54
NsiI	ATGCAT	1 cut(s)	724
NspI	RCATGY	2 cut(s)	209, 923
PciI	ACATGT	1 cut(s)	205
PciSI	GCTCTTC	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	26
PfeI	GAWTC	6 cut(s)	59, 260, 334, 434, 550, 773
Ppu21I	YACGTR	1 cut(s)	533
PscI	ACATGT	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	127
PstI	CTGCAG	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	368
PvuII	CAGCTG	2 cut(s)	158, 674
RsaI	GTAC	1 cut(s)	588
RsaNI	GTAC	1 cut(s)	587
RseI	CAYNNNNRTG	1 cut(s)	918
SapI	GCTCTTC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	122
Sau3AI	GATC	2 cut(s)	283, 368
Sau96I	GGNCC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	143
SduI	GDGCHC	2 cut(s)	98, 230
SfaNI	GCATC	2 cut(s)	709, 712
SfcI	CTRYAG	2 cut(s)	159, 832
SinI	GGWCC	1 cut(s)	127
SmiMI	CAYNNNNRTG	1 cut(s)	918
SnaBI	TACGTA	1 cut(s)	533
SpeI	ACTAGT	1 cut(s)	749
Sse9I	AATT	5 cut(s)	39, 477, 666, 824, 888
SsiI	CCGC	5 cut(s)	14, 82, 85, 105, 165
SspI	AATATT	1 cut(s)	814
SspMI	CTAG	5 cut(s)	314, 353, 557, 750, 795
StyD4I	CCNGG	1 cut(s)	141
StyI	CCWWGG	3 cut(s)	645, 654, 804
TaaI	ACNGT	3 cut(s)	22, 256, 385
TaiI	ACGT	4 cut(s)	101, 343, 535, 935
TaqI	TCGA	3 cut(s)	196, 321, 337
TasI	AATT	5 cut(s)	39, 477, 666, 824, 888
TauI	GCSGC	5 cut(s)	17, 85, 88, 107, 167
TfiI	GAWTC	6 cut(s)	59, 260, 334, 434, 550, 773
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TscAI	CASTG	2 cut(s)	261, 297
TseI	GCWGC	5 cut(s)	155, 158, 161, 671, 818
TspDTI	ATGAA	7 cut(s)	263, 412, 426, 465, 563, 626, 765
TspGWI	ACGGA	1 cut(s)	457
TspRI	CASTG	2 cut(s)	261, 297
VpaK11BI	GGWCC	1 cut(s)	127
XapI	RAATTY	2 cut(s)	39, 477
XceI	RCATGY	2 cut(s)	209, 923
XspI	CTAG	5 cut(s)	314, 353, 557, 750, 795
Zsp2I	ATGCAT	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.