Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004315

Physical Location & Seq

Genomic Coordinates Forward (+)

14556628 .. 14558203

Gene Structure 1576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23250

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAGTTTTTCTCCACAGACACGTGGTAATCTGAGAAGTGAGTGTGGCTCATCCACACTCAAGGTGAGTGTGAGCCTAGCACTCCCCTCTAAAAAATATGACGAAGCCCTAAATGGGCGCTGTATATTTCTTGTTGGTATGATGGGCTCTGGGAAACAACTGATGAAGTTGTCAACGTCTGGTTGTCTCTACTGGTGGTGCCATGGAGGTGTGGTGGTTCGGCCGGTGAACTGGAAATATATGCAGACAGAGATTAGTTTGTGGTTAGATGTGCCCTTGGAGGCCTTAGCTCAGAGACTCGCAGCTGCCGGAACTGATTCTCGGCCCCTTTTGCATCACAGAGAAACCATTGTGCGTCTGAGAAATCTTTTTGAAGAGAGGGGGGATGCATATGGCAATGCCGATGGTAGGGTTTCGTTGGAAAATGTTGCAGCCAAAATGGGGTGTAGAGATGCATCCAATATCACACCTAATGTTATTGCTTTCGAGGCGCTTGAACAAATTCAAGGCTTTCTCAAGGAAGAGGAAGGCCATCCTGCCGACGTTTCGGTCGGAAAGAGTTATGACTATGATTGGCTACACATTGGGGGATTTTCAGGAGATCGACAAGAATGCCAAGAAGGTTGGGAAGCTTTGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004765 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019438 GO:0019632 GO:0019752 GO:0032787 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

SKI

Protein Analysis

213

Amino Acids

23.56

Weight (kDa)

5.76

Isoelectric Point (pI)

51.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SKI	PF01202	68 - 145	1.1e-10	Shikimate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT4G39540 AT4G39540 AT4G39540
malus_domestica	MD01G1019500.v1.1 MD15G1332900.v1.1
prunus_persica	Prupe.6G172800_v2.0.a1 Prupe.6G172800_v2.0.a1
pyrus_communis	pycom01g04900 pycom15g29260
rosa_chinensis	RchiOBHm_Chr2g0116491 RchiOBHm_Chr2g0116501 RchiOBHm_Chr2g0116521 RchiOBHm_Chr6g0259311
rosa_laevigata	RLG00000018276 RLG00000018279
rosa_multiflora	Rmu_sc0004191.1_g000047 Rmu_sc0018630.1_g000001 Rmu_ssc0000050.1_g000062
rosa_roxburghii	Rroxscaffold_2G00127140 Rroxscaffold_2G00127150
rosa_rugosa	Rorug02G0207100 Rorug05G0587200
rosa_samantha	Rh2CG268700
rosa_wichuraiana	Rw2G020620 Rw2G020630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	548
AccB1I	GGYRCC	1 cut(s)	198
AcoI	YGGCCR	1 cut(s)	221
AcsI	RAATTY	1 cut(s)	501
AcvI	CACGTG	1 cut(s)	23
AfiI	CCNNNNNNNGG	3 cut(s)	114, 408, 441
AflIII	ACRYGT	1 cut(s)	20
AgsI	TTSAA	3 cut(s)	374, 497, 506
AluBI	AGCT	3 cut(s)	290, 305, 632
AluI	AGCT	3 cut(s)	290, 305, 632
Alw26I	GTCTC	2 cut(s)	191, 289
AoxI	GGCC	4 cut(s)	221, 282, 323, 529
ApeKI	GCWGC	3 cut(s)	302, 305, 431
ApoI	RAATTY	1 cut(s)	501
Asp700I	GAANNNNTTC	2 cut(s)	316, 501
AspLEI	GCGC	2 cut(s)	120, 493
AspS9I	GGNCC	1 cut(s)	324
AsuHPI	GGTGA	2 cut(s)	76, 238
BaeGI	GKGCMC	1 cut(s)	276
BanI	GGYRCC	1 cut(s)	198
BanII	GRGCYC	1 cut(s)	149
BbrPI	CACGTG	1 cut(s)	23
BbvI	GCAGC	3 cut(s)	292, 314, 443
BccI	CCATC	3 cut(s)	136, 398, 540
BcgI	CGANNNNNNTGC	2 cut(s)	594, 628
BcoDI	GTCTC	2 cut(s)	191, 289
BfaI	CTAG	1 cut(s)	77
BfoI	RGCGCY	2 cut(s)	121, 494
BisI	GCNGC	3 cut(s)	303, 306, 432
BlsI	GCNGC	3 cut(s)	304, 307, 433
BmgT120I	GGNCC	1 cut(s)	324
BmiI	GGNNCC	2 cut(s)	200, 326
BmsI	GCATC	4 cut(s)	343, 376, 442, 464
BplI	GAGNNNNNCTC	3 cut(s)	27, 32, 64
Bpu10I	CCTNAGC	1 cut(s)	286
BpuEI	CTTGAG	2 cut(s)	44, 500
BsaAI	YACGTR	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	202, 276
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 408, 441
Bse118I	RCCGGY	1 cut(s)	223
Bse1I	ACTGG	2 cut(s)	197, 236
Bse3DI	GCAATG	1 cut(s)	403
BseDI	CCNNGG	2 cut(s)	202, 276
BseGI	GGATG	4 cut(s)	50, 391, 455, 532
BseLI	CCNNNNNNNGG	3 cut(s)	114, 408, 441
BseMI	GCAATG	1 cut(s)	403
BseMII	CTCAG	3 cut(s)	23, 305, 350
BseNI	ACTGG	2 cut(s)	197, 236
BseSI	GKGCMC	1 cut(s)	276
BseX3I	CGGCCG	1 cut(s)	221
BseXI	GCAGC	3 cut(s)	292, 314, 443
Bsh1285I	CGRYCG	2 cut(s)	224, 552
BshFI	GGCC	4 cut(s)	223, 284, 325, 531
BshNI	GGYRCC	1 cut(s)	198
BsiEI	CGRYCG	2 cut(s)	224, 552
BsiSI	CCGG	2 cut(s)	224, 309
BslI	CCNNNNNNNGG	3 cut(s)	114, 408, 441
BsmAI	GTCTC	2 cut(s)	191, 289
BsmI	GAATGC	1 cut(s)	617
BsnI	GGCC	4 cut(s)	223, 284, 325, 531
Bsp1286I	GDGCHC	2 cut(s)	149, 276
Bsp143I	GATC	1 cut(s)	601
Bsp19I	CCATGG	1 cut(s)	202
BspANI	GGCC	4 cut(s)	223, 284, 325, 531
BspCNI	CTCAG	3 cut(s)	24, 304, 351
BspLI	GGNNCC	2 cut(s)	200, 326
BspT107I	GGYRCC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	403
BsrFI	RCCGGY	1 cut(s)	223
BsrI	ACTGG	2 cut(s)	197, 236
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	2 cut(s)	202, 276
BssMI	GATC	1 cut(s)	601
BssT1I	CCWWGG	2 cut(s)	202, 276
Bst6I	CTCTTC	2 cut(s)	369, 516
BstBAI	YACGTR	1 cut(s)	23
BstDEI	CTNAG	4 cut(s)	32, 286, 291, 359
BstDSI	CCRYGG	1 cut(s)	202
BstF5I	GGATG	4 cut(s)	50, 391, 455, 532
BstH2I	RGCGCY	2 cut(s)	121, 494
BstHHI	GCGC	2 cut(s)	120, 493
BstKTI	GATC	1 cut(s)	604
BstMAI	GTCTC	2 cut(s)	191, 289
BstMBI	GATC	1 cut(s)	601
BstMCI	CGRYCG	2 cut(s)	224, 552
BstMWI	GCNNNNNNNGC	2 cut(s)	331, 488
BstSLI	GKGCMC	1 cut(s)	276
BstV1I	GCAGC	3 cut(s)	292, 314, 443
BstZI	CGGCCG	1 cut(s)	221
BsuRI	GGCC	4 cut(s)	223, 284, 325, 531
BtgI	CCRYGG	1 cut(s)	202
BtsCI	GGATG	4 cut(s)	50, 391, 455, 532
CfoI	GCGC	2 cut(s)	120, 493
Cfr10I	RCCGGY	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	324
CseI	GACGC	1 cut(s)	344
CviAII	CATG	1 cut(s)	203
DdeI	CTNAG	4 cut(s)	32, 286, 291, 359
DpnI	GATC	1 cut(s)	603
DpnII	GATC	1 cut(s)	601
DrdI	GACNNNNNNGTC	1 cut(s)	548
DseDI	GACNNNNNNGTC	1 cut(s)	548
EaeI	YGGCCR	1 cut(s)	221
EagI	CGGCCG	1 cut(s)	221
Eam1104I	CTCTTC	2 cut(s)	369, 516
EarI	CTCTTC	2 cut(s)	369, 516
EclXI	CGGCCG	1 cut(s)	221
Eco130I	CCWWGG	2 cut(s)	202, 276
Eco147I	AGGCCT	1 cut(s)	284
Eco24I	GRGCYC	1 cut(s)	149
Eco52I	CGGCCG	1 cut(s)	221
Eco72I	CACGTG	1 cut(s)	23
EcoT14I	CCWWGG	2 cut(s)	202, 276
EcoT22I	ATGCAT	2 cut(s)	391, 457
EcoT38I	GRGCYC	1 cut(s)	149
ErhI	CCWWGG	2 cut(s)	202, 276
FaeI	CATG	1 cut(s)	206
FatI	CATG	1 cut(s)	202
FauNDI	CATATG	1 cut(s)	391
Fnu4HI	GCNGC	3 cut(s)	303, 306, 432
FokI	GGATG	4 cut(s)	37, 398, 442, 519
FriOI	GRGCYC	1 cut(s)	149
Fsp4HI	GCNGC	3 cut(s)	303, 306, 432
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	2 cut(s)	119, 492
GluI	GCNGC	3 cut(s)	303, 306, 432
HaeII	RGCGCY	2 cut(s)	121, 494
HaeIII	GGCC	4 cut(s)	223, 284, 325, 531
HapII	CCGG	2 cut(s)	224, 309
HgaI	GACGC	1 cut(s)	344
HhaI	GCGC	2 cut(s)	120, 493
Hin1II	CATG	1 cut(s)	206
Hin6I	GCGC	2 cut(s)	118, 491
HinP1I	GCGC	2 cut(s)	118, 491
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	630
HinfI	GANTC	2 cut(s)	297, 317
HpaII	CCGG	2 cut(s)	224, 309
HphI	GGTGA	2 cut(s)	76, 238
Hpy166II	GTNNAC	2 cut(s)	174, 229
Hpy188I	TCNGA	4 cut(s)	33, 294, 360, 554
Hpy188III	TCNNGA	1 cut(s)	597
Hpy8I	GTNNAC	2 cut(s)	174, 229
Hpy99I	CGWCG	1 cut(s)	545
HpyAV	CCTTC	2 cut(s)	521, 614
HpyCH4IV	ACGT	3 cut(s)	22, 176, 543
HpyCH4V	TGCA	5 cut(s)	244, 334, 389, 431, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	331, 488
HpyF3I	CTNAG	4 cut(s)	32, 286, 291, 359
HpySE526I	ACGT	3 cut(s)	22, 176, 543
Hsp92II	CATG	1 cut(s)	206
HspAI	GCGC	2 cut(s)	118, 491
Kzo9I	GATC	1 cut(s)	601
LpnPI	CCDG	8 cut(s)	135, 165, 178, 217, 237, 322, 549, 582
Lsp1109I	GCAGC	3 cut(s)	292, 314, 443
LweI	GCATC	4 cut(s)	343, 376, 442, 464
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	3 cut(s)	22, 176, 543
MalI	GATC	1 cut(s)	603
MboI	GATC	1 cut(s)	601
MboII	GAAGA	2 cut(s)	386, 533
MhlI	GDGCHC	2 cut(s)	149, 276
MluCI	AATT	1 cut(s)	501
MlyI	GAGTC	1 cut(s)	291
MmeI	TCCRAC	2 cut(s)	399, 532
MnlI	CCTC	6 cut(s)	97, 200, 274, 372, 481, 517
Mph1103I	ATGCAT	2 cut(s)	391, 457
MroXI	GAANNNNTTC	2 cut(s)	316, 501
MslI	CAYNNNNRTG	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	2 cut(s)	224, 309
Mva1269I	GAATGC	1 cut(s)	617
MwoI	GCNNNNNNNGC	2 cut(s)	331, 488
NcoI	CCATGG	1 cut(s)	202
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	1 cut(s)	601
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	2 cut(s)	200, 326
NmeAIII	GCCGAG	1 cut(s)	301
NsiI	ATGCAT	2 cut(s)	391, 457
PceI	AGGCCT	1 cut(s)	284
PctI	GAATGC	1 cut(s)	617
PdmI	GAANNNNTTC	2 cut(s)	316, 501
PfeI	GAWTC	1 cut(s)	317
PkrI	GCNGC	3 cut(s)	304, 307, 433
PleI	GAGTC	1 cut(s)	291
PmaCI	CACGTG	1 cut(s)	23
PmlI	CACGTG	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	291
Ppu21I	YACGTR	1 cut(s)	23
PspCI	CACGTG	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	200, 326
PspPI	GGNCC	1 cut(s)	324
PvuII	CAGCTG	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	207
SatI	GCNGC	3 cut(s)	303, 306, 432
Sau3AI	GATC	1 cut(s)	601
Sau96I	GGNCC	1 cut(s)	324
SchI	GAGTC	1 cut(s)	291
SduI	GDGCHC	2 cut(s)	149, 276
SfaNI	GCATC	4 cut(s)	343, 376, 442, 464
SmiMI	CAYNNNNRTG	1 cut(s)	207
SmlI	CTYRAG	2 cut(s)	59, 515
SmoI	CTYRAG	2 cut(s)	59, 515
Sse9I	AATT	1 cut(s)	501
SseBI	AGGCCT	1 cut(s)	284
SspMI	CTAG	1 cut(s)	77
StuI	AGGCCT	1 cut(s)	284
StyI	CCWWGG	2 cut(s)	202, 276
TaiI	ACGT	3 cut(s)	25, 179, 546
TaqI	TCGA	2 cut(s)	486, 604
TaqII	GACCGA	1 cut(s)	538
TasI	AATT	1 cut(s)	501
TfiI	GAWTC	1 cut(s)	317
TseI	GCWGC	3 cut(s)	302, 305, 431
TspDTI	ATGAA	1 cut(s)	179
XapI	RAATTY	1 cut(s)	501
XmnI	GAANNNNTTC	2 cut(s)	316, 501
XspI	CTAG	1 cut(s)	77
Zsp2I	ATGCAT	2 cut(s)	391, 457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.