Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004315

Physical Location & Seq

Genomic Coordinates Reverse (-)

28130064 .. 28144129

Gene Structure 14066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G020620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGCCTCCAGTTCAGCCTATCAACGCATTGGAAGAAATTAAAGTACTAGTACACCTTACATTGCAATCAAACATCGACCCCCGAGCATTGTACAATAGTAAGTCCCAAGAGATTGAGCCATACTTAAACGGGCGCTGTATATATCTTGTTGGTATGATGGGCTCTGGGAAAACAACTGTTGGCAACATTTTGTCACAGGCACTTAATTATTCATTTATTGATAGTGATACATTCGTGGAGCATGAGGCAGGTGGAAAATCTGTAGCTGAAATTTTCAAATTCTATGGAGAGGGTTTCTTTAGAGACAAGGAGACCGAGGCCCTACAAAAGCTGTCTATGATGCAACGTCATGTTGTCTCTACTGGCGGAGGTGCAGTAGTTCGGCCGGTCAACTGGAAATGTATGCAGAAGGGGATTAGTGTATGGTTAGATGTACCCTTGGAAGCCTTGGCCCAGAGAATTGCAGACGTGGGAACTGGTTCTCGTCCCCTTTTGCATCAAGGGCCCGGGGATGCGTACAGTAAAACATTTATGCGTCTATCTAGTCTTTTCAAAGAGAGAGGTGATGCATATGCCAATGCCAATGCTCGGGTTTCTTTGCAAAATATTGCAGCCAAAATGGATAGGGATGTATCCAATCTCTCGCCTACATCTATTGCTCTTGAGGCACTTCAACAAATTGAATGCTTTCTGGAGGAAGAGAGAGGCCGTGCCTGTGTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004765 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019438 GO:0019632 GO:0019752 GO:0032787 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

SKI

Protein Analysis

241

Amino Acids

26.62

Weight (kDa)

6.12

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_18	PF13238	47 - 158	4.3e-10	AAA domain
SKI	PF01202	53 - 206	4.4e-42	Shikimate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT4G39540 AT4G39540 AT4G39540
malus_domestica	MD01G1019500.v1.1 MD15G1332900.v1.1
prunus_persica	Prupe.6G172800_v2.0.a1 Prupe.6G172800_v2.0.a1
pyrus_communis	pycom01g04900 pycom15g29260
rosa_chinensis	RchiOBHm_Chr2g0116491 RchiOBHm_Chr2g0116501 RchiOBHm_Chr2g0116521 RchiOBHm_Chr6g0259311
rosa_laevigata	RLG00000018276 RLG00000018279
rosa_multiflora	Rmu_sc0004191.1_g000047 Rmu_sc0018630.1_g000001 Rmu_ssc0000050.1_g000062
rosa_roxburghii	Rroxscaffold_2G00127140 Rroxscaffold_2G00127150
rosa_rugosa	Rorug02G0207100 Rorug05G0587200
rosa_samantha	Rh2CG268700
rosa_wichuraiana	Rw2G020620 Rw2G020630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	239
Acc36I	ACCTGC	1 cut(s)	239
AciI	CCGC	1 cut(s)	366
AcoI	YGGCCR	1 cut(s)	383
AcsI	RAATTY	2 cut(s)	270, 278
AfaI	GTAC	5 cut(s)	45, 51, 92, 435, 518
AfiI	CCNNNNNNNGG	1 cut(s)	588
AgsI	TTSAA	4 cut(s)	277, 553, 674, 683
AhlI	ACTAGT	1 cut(s)	46
AjiI	CACGTC	1 cut(s)	469
AluBI	AGCT	2 cut(s)	266, 331
AluI	AGCT	2 cut(s)	266, 331
Alw26I	GTCTC	3 cut(s)	297, 305, 361
Ama87I	CYCGRG	3 cut(s)	81, 506, 588
AoxI	GGCC	5 cut(s)	318, 383, 450, 503, 706
ApaI	GGGCCC	1 cut(s)	507
ApeKI	GCWGC	1 cut(s)	611
ApoI	RAATTY	2 cut(s)	270, 278
Asp700I	GAANNNNTTC	2 cut(s)	478, 687
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	4 cut(s)	319, 451, 503, 504
AsuC2I	CCSGG	2 cut(s)	507, 508
AsuHPI	GGTGA	1 cut(s)	575
AvaI	CYCGRG	3 cut(s)	81, 506, 588
BaeGI	GKGCMC	1 cut(s)	507
BaeI	ACNNNNGTAYC	2 cut(s)	219, 252
BanII	GRGCYC	2 cut(s)	164, 507
BbvI	GCAGC	1 cut(s)	623
BccI	CCATC	1 cut(s)	151
BceAI	ACGGC	1 cut(s)	693
BciVI	GTATCC	1 cut(s)	643
BcnI	CCSGG	2 cut(s)	507, 508
BcoDI	GTCTC	3 cut(s)	297, 305, 361
BcuI	ACTAGT	1 cut(s)	46
BfaI	CTAG	2 cut(s)	47, 543
BfmI	CTRYAG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	136
BfuAI	ACCTGC	1 cut(s)	239
BfuI	GTATCC	1 cut(s)	643
BisI	GCNGC	1 cut(s)	612
BlsI	GCNGC	1 cut(s)	613
BmcAI	AGTACT	1 cut(s)	45
Bme1390I	CCNGG	2 cut(s)	507, 508
BmeT110I	CYCGRG	3 cut(s)	81, 506, 588
BmgBI	CACGTC	1 cut(s)	469
BmgT120I	GGNCC	4 cut(s)	319, 451, 503, 504
BmiI	GGNNCC	1 cut(s)	505
BmrFI	CCNGG	2 cut(s)	507, 508
BmsI	GCATC	4 cut(s)	330, 502, 505, 556
BpmI	CTGGAG	1 cut(s)	713
BpuEI	CTTGAG	1 cut(s)	683
BpuMI	CCSGG	2 cut(s)	507, 508
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	5 cut(s)	315, 438, 447, 506, 507
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	1 cut(s)	588
Bse118I	RCCGGY	1 cut(s)	385
Bse1I	ACTGG	4 cut(s)	8, 367, 398, 481
Bse3DI	GCAATG	1 cut(s)	59
BseDI	CCNNGG	5 cut(s)	315, 438, 447, 506, 507
BseGI	GGATG	2 cut(s)	517, 634
BseLI	CCNNNNNNNGG	1 cut(s)	588
BseMI	GCAATG	1 cut(s)	59
BseNI	ACTGG	4 cut(s)	8, 367, 398, 481
BseSI	GKGCMC	1 cut(s)	507
BseX3I	CGGCCG	1 cut(s)	383
BseXI	GCAGC	1 cut(s)	623
BsgI	GTGCAG	1 cut(s)	393
Bsh1285I	CGRYCG	1 cut(s)	386
BshFI	GGCC	5 cut(s)	320, 385, 452, 505, 708
BsiEI	CGRYCG	1 cut(s)	386
BsiHKCI	CYCGRG	3 cut(s)	81, 506, 588
BsiSI	CCGG	2 cut(s)	386, 507
BslFI	GGGAC	2 cut(s)	88, 471
BslI	CCNNNNNNNGG	1 cut(s)	588
BsmAI	GTCTC	3 cut(s)	297, 305, 361
BsmFI	GGGAC	2 cut(s)	88, 471
BsmI	GAATGC	1 cut(s)	689
BsnI	GGCC	5 cut(s)	320, 385, 452, 505, 708
Bso31I	GGTCTC	1 cut(s)	305
BsoBI	CYCGRG	3 cut(s)	81, 506, 588
Bsp120I	GGGCCC	1 cut(s)	503
Bsp1286I	GDGCHC	2 cut(s)	164, 507
Bsp1407I	TGTACA	1 cut(s)	90
BspACI	CCGC	1 cut(s)	366
BspANI	GGCC	5 cut(s)	320, 385, 452, 505, 708
BspLI	GGNNCC	1 cut(s)	505
BspMI	ACCTGC	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	305
BsrDI	GCAATG	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	385
BsrGI	TGTACA	1 cut(s)	90
BsrI	ACTGG	4 cut(s)	8, 367, 398, 481
BssAI	RCCGGY	1 cut(s)	385
BssECI	CCNNGG	5 cut(s)	315, 438, 447, 506, 507
BssT1I	CCWWGG	2 cut(s)	438, 447
Bst4CI	ACNGT	2 cut(s)	178, 521
Bst6I	CTCTTC	1 cut(s)	693
BstAUI	TGTACA	1 cut(s)	90
BstF5I	GGATG	2 cut(s)	517, 634
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	135
BstMAI	GTCTC	3 cut(s)	297, 305, 361
BstMCI	CGRYCG	1 cut(s)	386
BstMWI	GCNNNNNNNGC	2 cut(s)	502, 665
BstSCI	CCNGG	2 cut(s)	505, 506
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	1 cut(s)	507
BstV1I	GCAGC	1 cut(s)	623
BstZI	CGGCCG	1 cut(s)	383
BsuI	GTATCC	1 cut(s)	643
BsuRI	GGCC	5 cut(s)	320, 385, 452, 505, 708
BtrI	CACGTC	1 cut(s)	469
BtsCI	GGATG	2 cut(s)	517, 634
BveI	ACCTGC	1 cut(s)	239
CfoI	GCGC	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	385
Cfr13I	GGNCC	4 cut(s)	319, 451, 503, 504
Cfr9I	CCCGGG	1 cut(s)	506
CseI	GACGC	1 cut(s)	524
Csp6I	GTAC	5 cut(s)	44, 50, 91, 434, 517
CviAII	CATG	2 cut(s)	242, 350
CviQI	GTAC	5 cut(s)	44, 50, 91, 434, 517
EaeI	YGGCCR	1 cut(s)	383
EagI	CGGCCG	1 cut(s)	383
Eam1104I	CTCTTC	1 cut(s)	693
EarI	CTCTTC	1 cut(s)	693
EciI	GGCGGA	1 cut(s)	381
EclXI	CGGCCG	1 cut(s)	383
Eco130I	CCWWGG	2 cut(s)	438, 447
Eco24I	GRGCYC	2 cut(s)	164, 507
Eco31I	GGTCTC	1 cut(s)	305
Eco52I	CGGCCG	1 cut(s)	383
Eco88I	CYCGRG	3 cut(s)	81, 506, 588
EcoO109I	RGGNCCY	2 cut(s)	319, 503
EcoT14I	CCWWGG	2 cut(s)	438, 447
EcoT22I	ATGCAT	1 cut(s)	571
EcoT38I	GRGCYC	2 cut(s)	164, 507
ErhI	CCWWGG	2 cut(s)	438, 447
FaeI	CATG	2 cut(s)	245, 353
FaqI	GGGAC	2 cut(s)	88, 471
FatI	CATG	2 cut(s)	241, 349
FauNDI	CATATG	1 cut(s)	571
Fnu4HI	GCNGC	1 cut(s)	612
FokI	GGATG	2 cut(s)	524, 641
FriOI	GRGCYC	2 cut(s)	164, 507
Fsp4HI	GCNGC	1 cut(s)	612
FspBI	CTAG	2 cut(s)	47, 543
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	1 cut(s)	612
GsuI	CTGGAG	1 cut(s)	713
HaeII	RGCGCY	1 cut(s)	136
HaeIII	GGCC	5 cut(s)	320, 385, 452, 505, 708
HapII	CCGG	2 cut(s)	386, 507
HgaI	GACGC	1 cut(s)	524
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	2 cut(s)	245, 353
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HpaII	CCGG	2 cut(s)	386, 507
HphI	GGTGA	1 cut(s)	575
Hpy166II	GTNNAC	2 cut(s)	52, 391
Hpy188III	TCNNGA	2 cut(s)	662, 692
Hpy8I	GTNNAC	2 cut(s)	52, 391
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	2 cut(s)	178, 521
HpyCH4IV	ACGT	2 cut(s)	346, 468
HpyCH4V	TGCA	9 cut(s)	64, 343, 374, 406, 464, 496, 569, 601, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	502, 665
HpySE526I	ACGT	2 cut(s)	346, 468
Hsp92II	CATG	2 cut(s)	245, 353
HspAI	GCGC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	238
Lsp1109I	GCAGC	1 cut(s)	623
LweI	GCATC	4 cut(s)	330, 502, 505, 556
MaeI	CTAG	2 cut(s)	47, 543
MaeII	ACGT	2 cut(s)	346, 468
MaeIII	GTNAC	1 cut(s)	192
MboII	GAAGA	2 cut(s)	44, 710
MhlI	GDGCHC	2 cut(s)	164, 507
MluCI	AATT	6 cut(s)	36, 205, 270, 278, 459, 678
MnlI	CCTC	9 cut(s)	15, 238, 283, 310, 362, 554, 658, 688, 698
Mph1103I	ATGCAT	1 cut(s)	571
MroXI	GAANNNNTTC	2 cut(s)	478, 687
MseI	TTAA	3 cut(s)	39, 125, 204
MspI	CCGG	2 cut(s)	386, 507
MspR9I	CCNGG	2 cut(s)	507, 508
Mva1269I	GAATGC	1 cut(s)	689
MwoI	GCNNNNNNNGC	2 cut(s)	502, 665
NciI	CCSGG	2 cut(s)	507, 508
NdeI	CATATG	1 cut(s)	571
NlaIII	CATG	2 cut(s)	245, 353
NlaIV	GGNNCC	1 cut(s)	505
NmuCI	GTSAC	1 cut(s)	192
NsiI	ATGCAT	1 cut(s)	571
PaqCI	CACCTGC	1 cut(s)	239
PctI	GAATGC	1 cut(s)	689
PdmI	GAANNNNTTC	2 cut(s)	478, 687
PkrI	GCNGC	1 cut(s)	613
PspN4I	GGNNCC	1 cut(s)	505
PspOMI	GGGCCC	1 cut(s)	503
PspPI	GGNCC	4 cut(s)	319, 451, 503, 504
RsaI	GTAC	5 cut(s)	45, 51, 92, 435, 518
RsaNI	GTAC	5 cut(s)	44, 50, 91, 434, 517
SaqAI	TTAA	3 cut(s)	39, 125, 204
SatI	GCNGC	1 cut(s)	612
Sau96I	GGNCC	4 cut(s)	319, 451, 503, 504
ScaI	AGTACT	1 cut(s)	45
ScrFI	CCNGG	2 cut(s)	507, 508
SduI	GDGCHC	2 cut(s)	164, 507
SetI	ASST	8 cut(s)	57, 253, 268, 333, 349, 373, 471, 565
SfaNI	GCATC	4 cut(s)	330, 502, 505, 556
SfcI	CTRYAG	1 cut(s)	261
SmaI	CCCGGG	1 cut(s)	508
SmlI	CTYRAG	1 cut(s)	662
SmoI	CTYRAG	1 cut(s)	662
SpeI	ACTAGT	1 cut(s)	46
Sse9I	AATT	6 cut(s)	36, 205, 270, 278, 459, 678
SsiI	CCGC	1 cut(s)	366
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	2 cut(s)	47, 543
StyD4I	CCNGG	2 cut(s)	505, 506
StyI	CCWWGG	2 cut(s)	438, 447
TaaI	ACNGT	2 cut(s)	178, 521
TaiI	ACGT	2 cut(s)	349, 471
TaqI	TCGA	1 cut(s)	75
TaqII	GACCGA	1 cut(s)	329
TasI	AATT	6 cut(s)	36, 205, 270, 278, 459, 678
TatI	WGTACW	3 cut(s)	43, 49, 90
Tru1I	TTAA	3 cut(s)	39, 125, 204
Tru9I	TTAA	3 cut(s)	39, 125, 204
TseFI	GTSAC	1 cut(s)	192
TseI	GCWGC	1 cut(s)	611
Tsp45I	GTSAC	1 cut(s)	192
TspDTI	ATGAA	1 cut(s)	201
TspMI	CCCGGG	1 cut(s)	506
XapI	RAATTY	2 cut(s)	270, 278
XmaI	CCCGGG	1 cut(s)	506
XmnI	GAANNNNTTC	2 cut(s)	478, 687
XspI	CTAG	2 cut(s)	47, 543
ZrmI	AGTACT	1 cut(s)	45
Zsp2I	ATGCAT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.