Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018630.1

Orthogroup ID

OG0004315

Physical Location & Seq

Genomic Coordinates Forward (+)

525 .. 1152

Gene Structure 628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018630.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgcaacgtcatgttgtctctactggcggaggtgcagtagttcggccggtcaactggaaatgtatgcagaaggggattagtgtatggttagatgtacccttggaagccttggcccagagaattgcagacgtgggaactggttctcgtccccttttgcatcaagggccaggggatgcgtacactaaaacatttattcgtctatctaatcttttcaaagagagaggtgatgcatatgccaatgccaatgctcgggtttctttgcaaaatattgcagccaaaatgggttatagggatgtatccaatctctcgcctacatctattgctcttgaggtttcccctctttctcttactcttcagttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004765 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019438 GO:0019632 GO:0019752 GO:0032787 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

SKI

Protein Analysis

120

Amino Acids

13.01

Weight (kDa)

9.8

Isoelectric Point (pI)

34.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT4G39540 AT4G39540 AT4G39540
malus_domestica	MD01G1019500.v1.1 MD15G1332900.v1.1
prunus_persica	Prupe.6G172800_v2.0.a1 Prupe.6G172800_v2.0.a1
pyrus_communis	pycom01g04900 pycom15g29260
rosa_chinensis	RchiOBHm_Chr2g0116491 RchiOBHm_Chr2g0116501 RchiOBHm_Chr2g0116521 RchiOBHm_Chr6g0259311
rosa_laevigata	RLG00000018276 RLG00000018279
rosa_multiflora	Rmu_sc0004191.1_g000047 Rmu_sc0018630.1_g000001 Rmu_ssc0000050.1_g000062
rosa_roxburghii	Rroxscaffold_2G00127140 Rroxscaffold_2G00127150
rosa_rugosa	Rorug02G0207100 Rorug05G0587200
rosa_samantha	Rh2CG268700
rosa_wichuraiana	Rw2G020620 Rw2G020630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	44
AcuI	CTGAAG	1 cut(s)	338
AfaI	GTAC	2 cut(s)	96, 179
AfiI	CCNNNNNNNGG	1 cut(s)	249
AgsI	TTSAA	1 cut(s)	214
AjiI	CACGTC	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	22
Ama87I	CYCGRG	1 cut(s)	249
AoxI	GGCC	3 cut(s)	44, 111, 164
ApeKI	GCWGC	1 cut(s)	272
Asp700I	GAANNNNTTC	1 cut(s)	139
AspS9I	GGNCC	2 cut(s)	112, 164
AsuHPI	GGTGA	1 cut(s)	236
AvaI	CYCGRG	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	284
BciT130I	CCWGG	1 cut(s)	168
BciVI	GTATCC	1 cut(s)	307
BcoDI	GTCTC	1 cut(s)	22
BfuI	GTATCC	1 cut(s)	307
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
Bme1390I	CCNGG	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	249
BmgBI	CACGTC	1 cut(s)	130
BmgT120I	GGNCC	2 cut(s)	112, 164
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	3 cut(s)	163, 166, 217
BpuEI	CTTGAG	1 cut(s)	347
BsaJI	CCNNGG	3 cut(s)	99, 108, 167
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	3 cut(s)	28, 59, 142
BseBI	CCWGG	1 cut(s)	168
BseDI	CCNNGG	3 cut(s)	99, 108, 167
BseGI	GGATG	2 cut(s)	178, 298
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseNI	ACTGG	3 cut(s)	28, 59, 142
BseX3I	CGGCCG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	284
BsgI	GTGCAG	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	47
BshFI	GGCC	3 cut(s)	46, 113, 166
BsiEI	CGRYCG	1 cut(s)	47
BsiHKCI	CYCGRG	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	132
BsnI	GGCC	3 cut(s)	46, 113, 166
BsoBI	CYCGRG	1 cut(s)	249
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	3 cut(s)	46, 113, 166
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	3 cut(s)	28, 59, 142
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	3 cut(s)	99, 108, 167
BssT1I	CCWWGG	2 cut(s)	99, 108
Bst2UI	CCWGG	1 cut(s)	168
Bst6I	CTCTTC	1 cut(s)	357
BstF5I	GGATG	2 cut(s)	178, 298
BstMAI	GTCTC	1 cut(s)	22
BstMCI	CGRYCG	1 cut(s)	47
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	284
BstZI	CGGCCG	1 cut(s)	44
BsuI	GTATCC	1 cut(s)	307
BsuRI	GGCC	3 cut(s)	46, 113, 166
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	178, 298
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	112, 164
Csp6I	GTAC	2 cut(s)	95, 178
CviAII	CATG	1 cut(s)	11
CviJI	RGCY	5 cut(s)	46, 107, 113, 166, 275
CviKI_1	RGCY	5 cut(s)	46, 107, 113, 166, 275
CviQI	GTAC	2 cut(s)	95, 178
EaeI	YGGCCR	1 cut(s)	44
EagI	CGGCCG	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
EciI	GGCGGA	1 cut(s)	42
EclXI	CGGCCG	1 cut(s)	44
Eco130I	CCWWGG	2 cut(s)	99, 108
Eco52I	CGGCCG	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	338
Eco88I	CYCGRG	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	166
EcoT14I	CCWWGG	2 cut(s)	99, 108
EcoT22I	ATGCAT	1 cut(s)	232
ErhI	CCWWGG	2 cut(s)	99, 108
FaeI	CATG	1 cut(s)	14
FaiI	YATR	6 cut(s)	12, 65, 85, 232, 234, 288
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	1 cut(s)	10
FauNDI	CATATG	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	273
FokI	GGATG	2 cut(s)	185, 305
Fsp4HI	GCNGC	1 cut(s)	273
GluI	GCNGC	1 cut(s)	273
HaeIII	GGCC	3 cut(s)	46, 113, 166
HapII	CCGG	1 cut(s)	47
Hin1II	CATG	1 cut(s)	14
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	2 cut(s)	52, 180
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	2 cut(s)	52, 180
HpyAV	CCTTC	1 cut(s)	64
HpyCH4IV	ACGT	2 cut(s)	7, 129
HpyCH4V	TGCA	8 cut(s)	4, 35, 67, 125, 157, 230, 262, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpySE526I	ACGT	2 cut(s)	7, 129
Hsp92II	CATG	1 cut(s)	14
LpnPI	CCDG	7 cut(s)	9, 40, 60, 123, 128, 153, 180
Lsp1109I	GCAGC	1 cut(s)	284
LweI	GCATC	3 cut(s)	163, 166, 217
MaeII	ACGT	2 cut(s)	7, 129
MboII	GAAGA	1 cut(s)	344
MluCI	AATT	1 cut(s)	120
MnlI	CCTC	4 cut(s)	23, 215, 322, 348
Mph1103I	ATGCAT	1 cut(s)	232
MroXI	GAANNNNTTC	1 cut(s)	139
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	163
NdeI	CATATG	1 cut(s)	232
NlaIII	CATG	1 cut(s)	14
NsiI	ATGCAT	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	139
PkrI	GCNGC	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	112, 164
RsaI	GTAC	2 cut(s)	96, 179
RsaNI	GTAC	2 cut(s)	95, 178
SatI	GCNGC	1 cut(s)	273
Sau96I	GGNCC	2 cut(s)	112, 164
ScrFI	CCNGG	1 cut(s)	168
SetI	ASST	5 cut(s)	10, 34, 132, 226, 333
SfaNI	GCATC	3 cut(s)	163, 166, 217
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	1 cut(s)	120
SsiI	CCGC	1 cut(s)	27
SspI	AATATT	1 cut(s)	268
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	2 cut(s)	99, 108
TaiI	ACGT	2 cut(s)	10, 132
TasI	AATT	1 cut(s)	120
TseI	GCWGC	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	139
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.