Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000050.1

Orthogroup ID

OG0004315

Physical Location & Seq

Genomic Coordinates Reverse (-)

303874 .. 304493

Gene Structure 620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000050.1_g000062.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atgggctctgggaaaacaactgttggcaagattttatcagaaacacttcatgattattcttttgttgatattgataaattggtggaggatgagaaggggattagtgtgtggttagatgtacccttggaggccttagctcagagactcgcaggtgccggaactgattcgcggccccttttgcatcacagagaaaccatcgtgcgtctgagaagtctttttgaagagaggggggatgcatatgccaatgccgatgctaggatttcgttggaaaatgttgctgacaaaatggggtgtagagatgtatccaatatcacacctagtgttgtagagatgaacaacttcaaggctttctcaaggaagaggaaggccgttcattctaagttggcaatatctttcatgctgcatttgaaatacagcggcagcatgcattcttctcaatgccactctttggtgcatttcacaaacaccttgtgcacaaccttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004765 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019438 GO:0019632 GO:0019752 GO:0032787 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

SKI

Protein Analysis

161

Amino Acids

17.9

Weight (kDa)

7.8

Isoelectric Point (pI)

31.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT4G39540 AT4G39540 AT4G39540
malus_domestica	MD01G1019500.v1.1 MD15G1332900.v1.1
prunus_persica	Prupe.6G172800_v2.0.a1 Prupe.6G172800_v2.0.a1
pyrus_communis	pycom01g04900 pycom15g29260
rosa_chinensis	RchiOBHm_Chr2g0116491 RchiOBHm_Chr2g0116501 RchiOBHm_Chr2g0116521 RchiOBHm_Chr6g0259311
rosa_laevigata	RLG00000018276 RLG00000018279
rosa_multiflora	Rmu_sc0004191.1_g000047 Rmu_sc0018630.1_g000001 Rmu_ssc0000050.1_g000062
rosa_roxburghii	Rroxscaffold_2G00127140 Rroxscaffold_2G00127150
rosa_rugosa	Rorug02G0207100 Rorug05G0587200
rosa_samantha	Rh2CG268700
rosa_wichuraiana	Rw2G020620 Rw2G020630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	140
AccB1I	GGYRCC	1 cut(s)	152
AccB7I	CCANNNNNTGG	1 cut(s)	448
AccII	CGCG	1 cut(s)	169
AciI	CCGC	2 cut(s)	169, 417
AdeI	CACNNNGTG	2 cut(s)	320, 471
AfaI	GTAC	1 cut(s)	120
AfiI	CCNNNNNNNGG	2 cut(s)	255, 448
AgsI	TTSAA	3 cut(s)	221, 343, 409
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
Alw21I	GWGCWC	1 cut(s)	476
Alw26I	GTCTC	1 cut(s)	136
Alw44I	GTGCAC	1 cut(s)	472
AoxI	GGCC	3 cut(s)	129, 170, 366
ApaLI	GTGCAC	1 cut(s)	472
ApeKI	GCWGC	2 cut(s)	400, 420
Asp700I	GAANNNNTTC	3 cut(s)	45, 163, 338
AspS9I	GGNCC	1 cut(s)	171
BaeGI	GKGCMC	1 cut(s)	476
BanI	GGYRCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	476
BbvI	GCAGC	2 cut(s)	387, 432
BccI	CCATC	1 cut(s)	203
BceAI	ACGGC	1 cut(s)	353
BciVI	GTATCC	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	2 cut(s)	255, 318
BfuAI	ACCTGC	1 cut(s)	140
BfuI	GTATCC	1 cut(s)	313
BisI	GCNGC	4 cut(s)	170, 401, 418, 421
BlsI	GCNGC	4 cut(s)	171, 402, 419, 422
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	2 cut(s)	154, 173
BmsI	GCATC	3 cut(s)	190, 223, 241
Bpu10I	CCTNAGC	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	337
BsaJI	CCNNGG	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 448
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	2 cut(s)	94, 238
BseLI	CCNNNNNNNGG	2 cut(s)	255, 448
BseMII	CTCAG	2 cut(s)	152, 197
BseSI	GKGCMC	1 cut(s)	476
BseXI	GCAGC	2 cut(s)	387, 432
Bsh1236I	CGCG	1 cut(s)	169
BshFI	GGCC	3 cut(s)	131, 172, 368
BshNI	GGYRCC	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	476
BsiSI	CCGG	1 cut(s)	156
BslI	CCNNNNNNNGG	2 cut(s)	255, 448
BsmAI	GTCTC	1 cut(s)	136
BsmI	GAATGC	1 cut(s)	427
BsnI	GGCC	3 cut(s)	131, 172, 368
Bsp1286I	GDGCHC	2 cut(s)	8, 476
BspACI	CCGC	2 cut(s)	169, 417
BspANI	GGCC	3 cut(s)	131, 172, 368
BspCNI	CTCAG	2 cut(s)	151, 198
BspFNI	CGCG	1 cut(s)	169
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	154, 173
BspMI	ACCTGC	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	2 cut(s)	216, 353
BstC8I	GCNNGC	1 cut(s)	425
BstDEI	CTNAG	4 cut(s)	133, 138, 206, 378
BstF5I	GGATG	2 cut(s)	94, 238
BstFNI	CGCG	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNSI	RCATGY	1 cut(s)	427
BstSLI	GKGCMC	1 cut(s)	476
BstUI	CGCG	1 cut(s)	169
BstV1I	GCAGC	2 cut(s)	387, 432
BsuI	GTATCC	1 cut(s)	313
BsuRI	GGCC	3 cut(s)	131, 172, 368
BtsCI	GGATG	2 cut(s)	94, 238
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	425
CciI	TCATGA	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	171
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	3 cut(s)	50, 397, 424
CviJI	RGCY	6 cut(s)	6, 131, 137, 172, 347, 368
CviKI_1	RGCY	6 cut(s)	6, 131, 137, 172, 347, 368
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	4 cut(s)	133, 138, 206, 378
DraIII	CACNNNGTG	2 cut(s)	320, 471
Eam1104I	CTCTTC	2 cut(s)	216, 353
EarI	CTCTTC	2 cut(s)	216, 353
Eco130I	CCWWGG	1 cut(s)	123
Eco147I	AGGCCT	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	123
EcoT22I	ATGCAT	2 cut(s)	238, 429
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	3 cut(s)	53, 400, 427
FaiI	YATR	5 cut(s)	51, 238, 240, 398, 425
FatI	CATG	3 cut(s)	49, 396, 423
FauNDI	CATATG	1 cut(s)	238
Fnu4HI	GCNGC	4 cut(s)	170, 401, 418, 421
FokI	GGATG	2 cut(s)	101, 245
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	4 cut(s)	170, 401, 418, 421
FspBI	CTAG	2 cut(s)	255, 318
GluI	GCNGC	4 cut(s)	170, 401, 418, 421
HaeIII	GGCC	3 cut(s)	131, 172, 368
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	1 cut(s)	191
Hin1II	CATG	3 cut(s)	53, 400, 427
HinfI	GANTC	2 cut(s)	144, 164
HpaII	CCGG	1 cut(s)	156
Hpy166II	GTNNAC	1 cut(s)	474
Hpy188I	TCNGA	3 cut(s)	40, 141, 207
Hpy188III	TCNNGA	1 cut(s)	50
Hpy8I	GTNNAC	1 cut(s)	474
HpyAV	CCTTC	2 cut(s)	88, 358
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	6 cut(s)	181, 236, 403, 427, 454, 474
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	4 cut(s)	133, 138, 206, 378
Hsp92II	CATG	3 cut(s)	53, 400, 427
LpnPI	CCDG	2 cut(s)	135, 169
Lsp1109I	GCAGC	2 cut(s)	387, 432
LweI	GCATC	3 cut(s)	190, 223, 241
MaeI	CTAG	2 cut(s)	255, 318
MboII	GAAGA	3 cut(s)	233, 370, 423
MhlI	GDGCHC	2 cut(s)	8, 476
MluCI	AATT	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	4 cut(s)	79, 121, 219, 354
Mph1103I	ATGCAT	2 cut(s)	238, 429
MroXI	GAANNNNTTC	3 cut(s)	45, 163, 338
MspA1I	CMGCKG	1 cut(s)	417
MspI	CCGG	1 cut(s)	156
Mva1269I	GAATGC	1 cut(s)	427
MvnI	CGCG	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	178
NdeI	CATATG	1 cut(s)	238
NlaIII	CATG	3 cut(s)	53, 400, 427
NlaIV	GGNNCC	2 cut(s)	154, 173
NsiI	ATGCAT	2 cut(s)	238, 429
NspI	RCATGY	1 cut(s)	427
PaeI	GCATGC	1 cut(s)	427
PagI	TCATGA	1 cut(s)	49
PaqCI	CACCTGC	1 cut(s)	140
PceI	AGGCCT	1 cut(s)	131
PctI	GAATGC	1 cut(s)	427
PdmI	GAANNNNTTC	3 cut(s)	45, 163, 338
PfeI	GAWTC	1 cut(s)	164
PflMI	CCANNNNNTGG	1 cut(s)	448
PkrI	GCNGC	4 cut(s)	171, 402, 419, 422
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
PspN4I	GGNNCC	2 cut(s)	154, 173
PspPI	GGNCC	1 cut(s)	171
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
SatI	GCNGC	4 cut(s)	170, 401, 418, 421
Sau96I	GGNCC	1 cut(s)	171
SchI	GAGTC	1 cut(s)	138
SduI	GDGCHC	2 cut(s)	8, 476
SetI	ASST	5 cut(s)	139, 154, 319, 470, 482
SfaNI	GCATC	3 cut(s)	190, 223, 241
SmlI	CTYRAG	1 cut(s)	352
SmoI	CTYRAG	1 cut(s)	352
SphI	GCATGC	1 cut(s)	427
Sse9I	AATT	1 cut(s)	77
SseBI	AGGCCT	1 cut(s)	131
SsiI	CCGC	2 cut(s)	169, 417
SspMI	CTAG	2 cut(s)	255, 318
StuI	AGGCCT	1 cut(s)	131
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	22
TasI	AATT	1 cut(s)	77
TauI	GCSGC	2 cut(s)	172, 420
TfiI	GAWTC	1 cut(s)	164
TseI	GCWGC	2 cut(s)	400, 420
TspDTI	ATGAA	4 cut(s)	38, 347, 362, 385
Van91I	CCANNNNNTGG	1 cut(s)	448
VneI	GTGCAC	1 cut(s)	472
XceI	RCATGY	1 cut(s)	427
XmnI	GAANNNNTTC	3 cut(s)	45, 163, 338
XspI	CTAG	2 cut(s)	255, 318
Zsp2I	ATGCAT	2 cut(s)	238, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.