Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004315

Physical Location & Seq

Genomic Coordinates Reverse (-)

25983001 .. 25986443

Gene Structure 3443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g29260.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGACTATGGAGGCGGCTACGGTTGCGCCGAGATTGCAAATTTCAACATGGATGGTGGATTCCGACAAGGTTGCGAGGAGACTGCGGACGCGCTCGGCGGCCTCCTTCTCTCCGAGATTGAAGGACCGAAACATGACCCAGGTGTTGCTGCCTCACCTACCAACCCCAAAAATCTCCAATCGACAACGACATGTCGCTTTGGAGGTTTCATGCTCTTACAAGAACTTTCCAGCTTCAACAGTGGAATCTGGAAATTTTCATACTCTCGATGAATCGCTGGTTTTGAAGAATAAGGCACTAGCAATCGAGCCATATTTGAATGGACGTTGTATATATCTTGTTGGTATGATGGGATCTGGGAAAACAACCGTTGGCAAGATTATGGCGCAAGCACTTAGTTATTCATTCATTGATAGTGATTCATTGGTGGAGCATGATGTTGGTGGAACTTCTGTAGCTGAAATTTTCAAACTCTATGGAGAGGGCTTTTTCAGAGATAAGGAGACTGAGGCGCTACGTAAACTGTCTTTGACGCATCATTTAGTTGTTTCTACGGGTGGAGGTGCAGTTGTACGCCCTGTCAACTGGAAGTGTATGAAGAAGGGGATTAGTGTGTGGTTAGATGTTCCCTTGGAAGCCTTGGCTCAGAGAATTGCAGCTGTGGGAACTGGTTCTCGGCCCCTTTTGCATCACGGGTCAGGGGATGCATACAGAAAAACTTATATGCGTCTGACTAGTCTTTTTGAAGAGAGAGGTGATTCATATGCCAATGCCAATGCTAGGGTTTCCTTGGAAAATATTGCAGCCAAATTGGGTTATAGTGATGTATCCAATCTCACACCTACTGCCATCGTGATTGAGGCGCTTGAACAAATTGAAGGCTATCTGAAGGAAGAACACAGGCATGCACATATTACGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004765 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019438 GO:0019632 GO:0019752 GO:0032787 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

SKI

Protein Analysis

308

Amino Acids

33.91

Weight (kDa)

9.14

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT2G21940 AT4G39540 AT4G39540 AT4G39540
malus_domestica	MD01G1019500.v1.1 MD15G1332900.v1.1
prunus_persica	Prupe.6G172800_v2.0.a1 Prupe.6G172800_v2.0.a1
pyrus_communis	pycom01g04900 pycom15g29260
rosa_chinensis	RchiOBHm_Chr2g0116491 RchiOBHm_Chr2g0116501 RchiOBHm_Chr2g0116521 RchiOBHm_Chr6g0259311
rosa_laevigata	RLG00000018276 RLG00000018279
rosa_multiflora	Rmu_sc0004191.1_g000047 Rmu_sc0018630.1_g000001 Rmu_ssc0000050.1_g000062
rosa_roxburghii	Rroxscaffold_2G00127140 Rroxscaffold_2G00127150
rosa_rugosa	Rorug02G0207100 Rorug05G0587200
rosa_samantha	Rh2CG268700
rosa_wichuraiana	Rw2G020620 Rw2G020630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	91
AciI	CCGC	3 cut(s)	14, 85, 98
AclWI	GGATC	1 cut(s)	361
AcsI	RAATTY	3 cut(s)	39, 253, 462
AcuI	CTGAAG	1 cut(s)	908
AfaI	GTAC	1 cut(s)	573
AfiI	CCNNNNNNNGG	1 cut(s)	780
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	9 cut(s)	45, 121, 237, 286, 319, 469, 746, 869, 878
AhlI	ACTAGT	1 cut(s)	734
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	3 cut(s)	233, 458, 659
AluI	AGCT	3 cut(s)	233, 458, 659
Alw26I	GTCTC	2 cut(s)	73, 497
AlwI	GGATC	1 cut(s)	361
AoxI	GGCC	2 cut(s)	99, 677
ApeKI	GCWGC	3 cut(s)	148, 656, 803
ApoI	RAATTY	3 cut(s)	39, 253, 462
Asp700I	GAANNNNTTC	1 cut(s)	670
AspLEI	GCGC	5 cut(s)	28, 93, 388, 514, 865
AspS9I	GGNCC	2 cut(s)	124, 678
AsuHPI	GGTGA	2 cut(s)	146, 767
AvaII	GGWCC	1 cut(s)	124
BbvI	GCAGC	3 cut(s)	135, 668, 815
BccI	CCATC	3 cut(s)	46, 343, 857
BcgI	CGANNNNNNTGC	4 cut(s)	53, 64, 87, 98
BciT130I	CCWGG	1 cut(s)	140
BciVI	GTATCC	1 cut(s)	838
BcoDI	GTCTC	2 cut(s)	73, 497
BcuI	ACTAGT	1 cut(s)	734
BfaI	CTAG	3 cut(s)	299, 735, 780
BfmI	CTRYAG	1 cut(s)	453
BfoI	RGCGCY	2 cut(s)	515, 866
BfuI	GTATCC	1 cut(s)	838
BisI	GCNGC	5 cut(s)	15, 99, 149, 657, 804
BlsI	GCNGC	5 cut(s)	16, 100, 150, 658, 805
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	2 cut(s)	124, 678
BmiI	GGNNCC	1 cut(s)	680
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	3 cut(s)	544, 694, 697
BsaAI	YACGTR	1 cut(s)	518
BsaJI	CCNNGG	4 cut(s)	138, 630, 639, 789
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	1 cut(s)	780
Bse1I	ACTGG	2 cut(s)	590, 673
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	4 cut(s)	138, 630, 639, 789
BseGI	GGATG	2 cut(s)	57, 709
BseLI	CCNNNNNNNGG	1 cut(s)	780
BseMII	CTCAG	2 cut(s)	498, 659
BseNI	ACTGG	2 cut(s)	590, 673
BseRI	GAGGAG	1 cut(s)	91
BseXI	GCAGC	3 cut(s)	135, 668, 815
BsgI	GTGCAG	1 cut(s)	585
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	2 cut(s)	101, 679
BslI	CCNNNNNNNGG	1 cut(s)	780
BsmAI	GTCTC	2 cut(s)	73, 497
BsnI	GGCC	2 cut(s)	101, 679
Bsp143I	GATC	1 cut(s)	353
BspACI	CCGC	3 cut(s)	14, 85, 98
BspANI	GGCC	2 cut(s)	101, 679
BspCNI	CTCAG	2 cut(s)	499, 658
BspFNI	CGCG	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	680
BspPI	GGATC	1 cut(s)	361
BsrI	ACTGG	2 cut(s)	590, 673
BssECI	CCNNGG	4 cut(s)	138, 630, 639, 789
BssMI	GATC	1 cut(s)	353
BssT1I	CCWWGG	3 cut(s)	630, 639, 789
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	4 cut(s)	22, 241, 370, 525
Bst6I	CTCTTC	1 cut(s)	741
BstBAI	YACGTR	1 cut(s)	518
BstC8I	GCNNGC	2 cut(s)	390, 906
BstDEI	CTNAG	3 cut(s)	395, 507, 645
BstF5I	GGATG	2 cut(s)	57, 709
BstFNI	CGCG	1 cut(s)	91
BstH2I	RGCGCY	2 cut(s)	515, 866
BstHHI	GCGC	5 cut(s)	28, 93, 388, 514, 865
BstKTI	GATC	1 cut(s)	356
BstMAI	GTCTC	2 cut(s)	73, 497
BstMBI	GATC	1 cut(s)	353
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 34, 685
BstNI	CCWGG	1 cut(s)	140
BstNSI	RCATGY	2 cut(s)	194, 908
BstSCI	CCNGG	1 cut(s)	138
BstSFI	CTRYAG	1 cut(s)	453
BstSNI	TACGTA	1 cut(s)	518
BstUI	CGCG	1 cut(s)	91
BstV1I	GCAGC	3 cut(s)	135, 668, 815
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BsuI	GTATCC	1 cut(s)	838
BsuRI	GGCC	2 cut(s)	101, 679
BtsCI	GGATG	2 cut(s)	57, 709
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	2 cut(s)	390, 906
CfoI	GCGC	5 cut(s)	28, 93, 388, 514, 865
Cfr13I	GGNCC	2 cut(s)	124, 678
CseI	GACGC	3 cut(s)	97, 541, 716
Csp6I	GTAC	1 cut(s)	572
CviAII	CATG	6 cut(s)	48, 133, 191, 210, 434, 905
CviQI	GTAC	1 cut(s)	572
DdeI	CTNAG	3 cut(s)	395, 507, 645
DpnI	GATC	1 cut(s)	355
DpnII	GATC	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	741
EarI	CTCTTC	1 cut(s)	741
Eco105I	TACGTA	1 cut(s)	518
Eco130I	CCWWGG	3 cut(s)	630, 639, 789
Eco47I	GGWCC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	908
EcoRII	CCWGG	1 cut(s)	138
EcoT14I	CCWWGG	3 cut(s)	630, 639, 789
EcoT22I	ATGCAT	1 cut(s)	709
ErhI	CCWWGG	3 cut(s)	630, 639, 789
FaeI	CATG	6 cut(s)	51, 136, 194, 213, 437, 908
FatI	CATG	6 cut(s)	47, 132, 190, 209, 433, 904
FauNDI	CATATG	1 cut(s)	763
Fnu4HI	GCNGC	5 cut(s)	15, 99, 149, 657, 804
FokI	GGATG	2 cut(s)	64, 716
Fsp4HI	GCNGC	5 cut(s)	15, 99, 149, 657, 804
FspBI	CTAG	3 cut(s)	299, 735, 780
GlaI	GCGC	5 cut(s)	27, 92, 387, 513, 864
GluI	GCNGC	5 cut(s)	15, 99, 149, 657, 804
HaeII	RGCGCY	2 cut(s)	515, 866
HaeIII	GGCC	2 cut(s)	101, 679
HgaI	GACGC	3 cut(s)	97, 541, 716
HhaI	GCGC	5 cut(s)	28, 93, 388, 514, 865
Hin1II	CATG	6 cut(s)	51, 136, 194, 213, 437, 908
Hin6I	GCGC	5 cut(s)	26, 91, 386, 512, 863
HinP1I	GCGC	5 cut(s)	26, 91, 386, 512, 863
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HinfI	GANTC	5 cut(s)	59, 245, 272, 419, 758
HphI	GGTGA	2 cut(s)	146, 767
Hpy166II	GTNNAC	2 cut(s)	521, 583
Hpy188I	TCNGA	6 cut(s)	64, 114, 494, 648, 732, 888
Hpy188III	TCNNGA	3 cut(s)	249, 266, 853
Hpy8I	GTNNAC	2 cut(s)	521, 583
HpyAV	CCTTC	5 cut(s)	115, 115, 595, 872, 883
HpyCH4III	ACNGT	4 cut(s)	22, 241, 370, 525
HpyCH4IV	ACGT	3 cut(s)	325, 517, 917
HpyCH4V	TGCA	7 cut(s)	37, 566, 656, 688, 707, 803, 908
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 34, 685
HpyF3I	CTNAG	3 cut(s)	395, 507, 645
HpySE526I	ACGT	3 cut(s)	325, 517, 917
Hsp92II	CATG	6 cut(s)	51, 136, 194, 213, 437, 908
HspAI	GCGC	5 cut(s)	26, 91, 386, 512, 863
Kzo9I	GATC	1 cut(s)	353
LmnI	GCTCC	1 cut(s)	430
Lsp1109I	GCAGC	3 cut(s)	135, 668, 815
LweI	GCATC	3 cut(s)	544, 694, 697
MaeI	CTAG	3 cut(s)	299, 735, 780
MaeII	ACGT	3 cut(s)	325, 517, 917
MalI	GATC	1 cut(s)	355
MboI	GATC	1 cut(s)	353
MboII	GAAGA	4 cut(s)	298, 610, 758, 905
MflI	RGATCY	1 cut(s)	353
MluCI	AATT	6 cut(s)	39, 253, 462, 651, 809, 873
MmeI	TCCRAC	1 cut(s)	87
Mph1103I	ATGCAT	1 cut(s)	709
MroXI	GAANNNNTTC	1 cut(s)	670
MslI	CAYNNNNRTG	1 cut(s)	903
MspA1I	CMGCKG	1 cut(s)	659
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
MvnI	CGCG	1 cut(s)	91
MwoI	GCNNNNNNNGC	3 cut(s)	23, 34, 685
NdeI	CATATG	1 cut(s)	763
NdeII	GATC	1 cut(s)	353
NlaIII	CATG	6 cut(s)	51, 136, 194, 213, 437, 908
NlaIV	GGNNCC	1 cut(s)	680
NmeAIII	GCCGAG	3 cut(s)	54, 74, 655
NsiI	ATGCAT	1 cut(s)	709
NspI	RCATGY	2 cut(s)	194, 908
PaeI	GCATGC	1 cut(s)	908
PciI	ACATGT	1 cut(s)	190
PcsI	WCGNNNNNNNCGW	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	670
PfeI	GAWTC	5 cut(s)	59, 245, 272, 419, 758
PkrI	GCNGC	5 cut(s)	16, 100, 150, 658, 805
Ppu21I	YACGTR	1 cut(s)	518
PscI	ACATGT	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	680
PspPI	GGNCC	2 cut(s)	124, 678
PsuI	RGATCY	1 cut(s)	353
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	1 cut(s)	573
RsaNI	GTAC	1 cut(s)	572
RseI	CAYNNNNRTG	1 cut(s)	903
SatI	GCNGC	5 cut(s)	15, 99, 149, 657, 804
Sau3AI	GATC	1 cut(s)	353
Sau96I	GGNCC	2 cut(s)	124, 678
ScrFI	CCNGG	1 cut(s)	140
SfaNI	GCATC	3 cut(s)	544, 694, 697
SfcI	CTRYAG	1 cut(s)	453
SinI	GGWCC	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	903
SnaBI	TACGTA	1 cut(s)	518
SpeI	ACTAGT	1 cut(s)	734
SphI	GCATGC	1 cut(s)	908
Sse9I	AATT	6 cut(s)	39, 253, 462, 651, 809, 873
SsiI	CCGC	3 cut(s)	14, 85, 98
SspI	AATATT	1 cut(s)	799
SspMI	CTAG	3 cut(s)	299, 735, 780
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	3 cut(s)	630, 639, 789
TaaI	ACNGT	4 cut(s)	22, 241, 370, 525
TaiI	ACGT	3 cut(s)	328, 520, 920
TaqI	TCGA	3 cut(s)	181, 267, 306
TaqII	GACCGA	1 cut(s)	141
TasI	AATT	6 cut(s)	39, 253, 462, 651, 809, 873
TauI	GCSGC	2 cut(s)	17, 101
TfiI	GAWTC	5 cut(s)	59, 245, 272, 419, 758
TscAI	CASTG	1 cut(s)	246
TseI	GCWGC	3 cut(s)	148, 656, 803
TspDTI	ATGAA	8 cut(s)	198, 248, 285, 393, 397, 411, 611, 750
TspRI	CASTG	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	3 cut(s)	39, 253, 462
XceI	RCATGY	2 cut(s)	194, 908
XmnI	GAANNNNTTC	1 cut(s)	670
XspI	CTAG	3 cut(s)	299, 735, 780
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.