AT2G22200

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013978
Physical Location & Seq
Reverse (-)
9443073 .. 9444428
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G22200.1

Sequence Viewer

Length: 786 bp
ATGGAAACTGCTTCTCTTTCTTTCCCTGTCCCAAACACGAGCTTCGGTGTAAACAAATCTATGCCTCTCGGTCTAAACCAGCTCACACCATACCAAATTCATCAGATTCAGAACCAGCTTAACCATAGACGTAGCACAATCTCAAACCTCTCTCCAAACCGTATCAGAATGAAGAACTTAACACCTTCTACCTCCAAAACCAAGAATCTCTACAGAGGCGTAAGGCAAAGGCACTGGGGGAAATGGGTCGCTGAGATCCGTTTGCCCAAGAACCGGACCCGTCTCTGGCTCGGGACATTCGAAACCGCCGAAAAAGCCGCCTTAGCTTACGACCAAGCTGCTTTTCAGCTCCGTGGAGATATCGCGAAGCTTAACTTCCCAAACCTCATACACGAAGACATGAATCCTCTCCCTTCCTCTGTTGATACCAAGCTTCAAGCTATCTGCAAAAGTTTGAGAAAAACAGAGGAAATTTGCTCTGTTTCTGATCAAACAAAGGAGTACTCTGTTTACTCTGTTTCAGATAAAACAGAGCTTTTCCTGCCAAAAGCAGAGCTTTTCTTGCCTAAAAGAGAGCATTTGGAGACAAATGAGCTCTCTAATGAGTCACCGAGAAGCGATGAGACCTCGTTGTTGGATGAGTCGCAGGCGGAATATTCATCGTCGGATAAAACATTCCTGGATTTCTCGGATACTGAGTTTGAAGAGATTGGAAGTTTCGGGCTTCGGAAGTTTCCTTCGGTGGAGATTGATTGGGATGCAATTAGTAAACTGGCCAATTCTTAA

Protein Analysis

261

Amino Acids

29.79

Weight (kDa)

6.55

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 71 - 119 9.3e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22200 AT4G39780
fragaria_vesca FvH4_1g21210
malus_domestica MD15G1326800.v1.1
prunus_persica Prupe.6G182200_v2.0.a1
pyrus_communis pycom01g05500 pycom395g00070
rosa_chinensis RchiOBHm_Chr2g0115041
rosa_laevigata RLG00000018150
rosa_multiflora Rmu_sc0000784.1_g000017
rosa_roxburghii Rroxscaffold_2G00130510
rosa_rugosa Rorug02G0192600
rosa_samantha Rh2AG251200 Rh2BG260700 Rh2CG255800 Rh2DG259200
rosa_wichuraiana Rw2G019610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 365
AciI CCGC 3 cut(s) 306, 318, 650
AclWI GGATC 1 cut(s) 250
AcoI YGGCCR 1 cut(s) 774
AcsI RAATTY 2 cut(s) 96, 471
AfaI GTAC 1 cut(s) 503
AfiI CCNNNNNNNGG 2 cut(s) 273, 285
AgsI TTSAA 2 cut(s) 437, 704
AjnI CCWGG 1 cut(s) 678
AjuI GAANNNNNNNTTGG 2 cut(s) 327, 359
Alw21I GWGCWC 1 cut(s) 597
Alw26I GTCTC 3 cut(s) 287, 578, 617
AlwI GGATC 1 cut(s) 250
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 1 cut(s) 774
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 2 cut(s) 96, 471
AspS9I GGNCC 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 600
AsuII TTCGAA 1 cut(s) 300
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 1 cut(s) 276
BalI TGGCCA 1 cut(s) 776
BanII GRGCYC 1 cut(s) 597
BauI CACGAG 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 402
Bbv12I GWGCWC 1 cut(s) 597
BbvI GCAGC 1 cut(s) 325
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BciT130I CCWGG 1 cut(s) 680
BciVI GTATCC 1 cut(s) 685
BclI TGATCA 1 cut(s) 487
BcoDI GTCTC 3 cut(s) 287, 578, 617
BfmI CTRYAG 1 cut(s) 211
BfuI GTATCC 1 cut(s) 685
BisI GCNGC 2 cut(s) 318, 339
BlsI GCNGC 2 cut(s) 319, 340
BmcAI AGTACT 1 cut(s) 503
Bme1390I CCNGG 1 cut(s) 680
Bme18I GGWCC 1 cut(s) 276
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 276
BmiI GGNNCC 1 cut(s) 278
BmrFI CCNGG 1 cut(s) 680
BmrI ACTGGG 1 cut(s) 244
BmsI GCATC 1 cut(s) 748
BmuI ACTGGG 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 402
Bpu10I CCTNAGC 1 cut(s) 322
Bpu14I TTCGAA 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 617
BsaJI CCNNGG 1 cut(s) 352
BsaWI WCCGGW 1 cut(s) 273
Bsc4I CCNNNNNNNGG 2 cut(s) 273, 285
Bse1I ACTGG 2 cut(s) 239, 777
BseBI CCWGG 1 cut(s) 680
BseDI CCNNGG 1 cut(s) 352
BseGI GGATG 2 cut(s) 643, 763
BseLI CCNNNNNNNGG 2 cut(s) 273, 285
BseMII CTCAG 2 cut(s) 243, 687
BseNI ACTGG 2 cut(s) 239, 777
BseXI GCAGC 1 cut(s) 325
Bsh1236I CGCG 1 cut(s) 365
BshFI GGCC 1 cut(s) 776
BsiHKAI GWGCWC 1 cut(s) 597
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 1 cut(s) 274
BslFI GGGAC 2 cut(s) 14, 307
BslI CCNNNNNNNGG 2 cut(s) 273, 285
BsmAI GTCTC 3 cut(s) 287, 578, 617
BsmBI CGTCTC 1 cut(s) 287
BsmFI GGGAC 2 cut(s) 14, 307
BsnI GGCC 1 cut(s) 776
Bso31I GGTCTC 1 cut(s) 617
BsoBI CYCGRG 1 cut(s) 290
Bsp119I TTCGAA 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 597
Bsp143I GATC 2 cut(s) 255, 487
Bsp68I TCGCGA 1 cut(s) 365
BspACI CCGC 3 cut(s) 306, 318, 650
BspANI GGCC 1 cut(s) 776
BspCNI CTCAG 2 cut(s) 244, 688
BspFNI CGCG 1 cut(s) 365
BspLI GGNNCC 1 cut(s) 278
BspPI GGATC 1 cut(s) 250
BspT104I TTCGAA 1 cut(s) 300
BspTNI GGTCTC 1 cut(s) 617
BsrI ACTGG 2 cut(s) 239, 777
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 2 cut(s) 255, 487
BssSI CACGAG 1 cut(s) 37
Bst2BI CACGAG 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 680
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 1 cut(s) 699
BstBI TTCGAA 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 648
BstDEI CTNAG 3 cut(s) 252, 322, 696
BstDSI CCRYGG 1 cut(s) 352
BstF5I GGATG 2 cut(s) 643, 763
BstFNI CGCG 1 cut(s) 365
BstKTI GATC 2 cut(s) 258, 490
BstMAI GTCTC 3 cut(s) 287, 578, 617
BstMBI GATC 2 cut(s) 255, 487
BstMWI GCNNNNNNNGC 4 cut(s) 314, 323, 541, 562
BstNI CCWGG 1 cut(s) 680
BstSCI CCNGG 1 cut(s) 678
BstSFI CTRYAG 1 cut(s) 211
BstUI CGCG 1 cut(s) 365
BstV1I GCAGC 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 1 cut(s) 255
BstYI RGATCY 1 cut(s) 255
BsuI GTATCC 1 cut(s) 685
BsuRI GGCC 1 cut(s) 776
BtgI CCRYGG 1 cut(s) 352
BtgZI GCGATG 1 cut(s) 633
BtsCI GGATG 2 cut(s) 643, 763
BtsIMutI CAGTG 1 cut(s) 232
BtuMI TCGCGA 1 cut(s) 365
Cac8I GCNNGC 1 cut(s) 648
Cfr13I GGNCC 1 cut(s) 276
Csp6I GTAC 1 cut(s) 502
CviAII CATG 1 cut(s) 400
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 3 cut(s) 252, 322, 696
DpnI GATC 2 cut(s) 257, 489
DpnII GATC 2 cut(s) 255, 487
EaeI YGGCCR 1 cut(s) 774
Eam1104I CTCTTC 1 cut(s) 699
EarI CTCTTC 1 cut(s) 699
EciI GGCGGA 1 cut(s) 665
Ecl136II GAGCTC 1 cut(s) 595
Eco24I GRGCYC 1 cut(s) 597
Eco31I GGTCTC 1 cut(s) 617
Eco32I GATATC 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 276
Eco53kI GAGCTC 1 cut(s) 595
Eco88I CYCGRG 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 595
EcoRII CCWGG 1 cut(s) 678
EcoRV GATATC 1 cut(s) 361
EcoT38I GRGCYC 1 cut(s) 597
Esp3I CGTCTC 1 cut(s) 287
FaeI CATG 1 cut(s) 403
FaiI YATR 5 cut(s) 62, 91, 126, 389, 401
FalI AAGNNNNNCTT 4 cut(s) 359, 391, 540, 572
FaqI GGGAC 2 cut(s) 14, 307
FatI CATG 1 cut(s) 399
FbaI TGATCA 1 cut(s) 487
Fnu4HI GCNGC 2 cut(s) 318, 339
FokI GGATG 2 cut(s) 650, 770
FriOI GRGCYC 1 cut(s) 597
Fsp4HI GCNGC 2 cut(s) 318, 339
GluI GCNGC 2 cut(s) 318, 339
HaeIII GGCC 1 cut(s) 776
HapII CCGG 1 cut(s) 274
Hin1II CATG 1 cut(s) 403
HindIII AAGCTT 2 cut(s) 368, 431
HinfI GANTC 5 cut(s) 106, 205, 403, 605, 641
HpaII CCGG 1 cut(s) 274
HphI GGTGA 1 cut(s) 600
Hpy166II GTNNAC 3 cut(s) 52, 511, 770
Hpy188I TCNGA 8 cut(s) 105, 111, 167, 487, 523, 667, 691, 729
Hpy188III TCNNGA 2 cut(s) 292, 364
Hpy8I GTNNAC 3 cut(s) 52, 511, 770
Hpy99I CGWCG 1 cut(s) 667
HpyAV CCTTC 3 cut(s) 195, 423, 747
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 2 cut(s) 447, 761
HpyF10VI GCNNNNNNNGC 4 cut(s) 314, 323, 541, 562
HpyF3I CTNAG 3 cut(s) 252, 322, 696
HpySE526I ACGT 1 cut(s) 130
Hsp92II CATG 1 cut(s) 403
Ksp22I TGATCA 1 cut(s) 487
Kzo9I GATC 2 cut(s) 255, 487
LmnI GCTCC 1 cut(s) 354
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 1 cut(s) 748
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 1 cut(s) 606
MalI GATC 2 cut(s) 257, 489
MboI GATC 2 cut(s) 255, 487
MboII GAAGA 3 cut(s) 184, 407, 716
MflI RGATCY 1 cut(s) 255
MhlI GDGCHC 1 cut(s) 597
MlsI TGGCCA 1 cut(s) 776
MluCI AATT 4 cut(s) 96, 471, 762, 778
MluNI TGGCCA 1 cut(s) 776
MlyI GAGTC 2 cut(s) 614, 650
MmeI TCCRAC 2 cut(s) 615, 645
MnlI CCTC 9 cut(s) 75, 158, 202, 209, 395, 417, 427, 460, 637
Mox20I TGGCCA 1 cut(s) 776
MscI TGGCCA 1 cut(s) 776
MseI TTAA 4 cut(s) 120, 179, 372, 784
Msp20I TGGCCA 1 cut(s) 776
MspI CCGG 1 cut(s) 274
MspR9I CCNGG 1 cut(s) 680
MvaI CCWGG 1 cut(s) 680
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 4 cut(s) 314, 323, 541, 562
NdeII GATC 2 cut(s) 255, 487
NlaIII CATG 1 cut(s) 403
NlaIV GGNNCC 1 cut(s) 278
NmuCI GTSAC 1 cut(s) 606
NruI TCGCGA 1 cut(s) 365
NspV TTCGAA 1 cut(s) 300
PcsI WCGNNNNNNNCGW 2 cut(s) 297, 306
PfeI GAWTC 3 cut(s) 106, 205, 403
PfoI TCCNGGA 1 cut(s) 678
PkrI GCNGC 2 cut(s) 319, 340
PleI GAGTC 2 cut(s) 613, 649
PpsI GAGTC 2 cut(s) 613, 649
Psp124BI GAGCTC 1 cut(s) 597
Psp6I CCWGG 1 cut(s) 678
PspGI CCWGG 1 cut(s) 678
PspN4I GGNNCC 1 cut(s) 278
PspPI GGNCC 1 cut(s) 276
PsuI RGATCY 1 cut(s) 255
RruI TCGCGA 1 cut(s) 365
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
SacI GAGCTC 1 cut(s) 597
SaqAI TTAA 4 cut(s) 120, 179, 372, 784
SatI GCNGC 2 cut(s) 318, 339
Sau3AI GATC 2 cut(s) 255, 487
Sau96I GGNCC 1 cut(s) 276
ScaI AGTACT 1 cut(s) 503
SchI GAGTC 2 cut(s) 614, 650
ScrFI CCNGG 1 cut(s) 680
SduI GDGCHC 1 cut(s) 597
SfaNI GCATC 1 cut(s) 748
SfcI CTRYAG 1 cut(s) 211
SfuI TTCGAA 1 cut(s) 300
SinI GGWCC 1 cut(s) 276
Sse9I AATT 4 cut(s) 96, 471, 762, 778
SsiI CCGC 3 cut(s) 306, 318, 650
SspI AATATT 1 cut(s) 656
SstI GAGCTC 1 cut(s) 597
StyD4I CCNGG 1 cut(s) 678
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 1 cut(s) 133
TaqI TCGA 1 cut(s) 300
TaqII GACCGA 1 cut(s) 59
TasI AATT 4 cut(s) 96, 471, 762, 778
TatI WGTACW 1 cut(s) 501
TauI GCSGC 1 cut(s) 320
TfiI GAWTC 3 cut(s) 106, 205, 403
Tru1I TTAA 4 cut(s) 120, 179, 372, 784
Tru9I TTAA 4 cut(s) 120, 179, 372, 784
TscAI CASTG 1 cut(s) 239
TseFI GTSAC 1 cut(s) 606
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 1 cut(s) 606
TspDTI ATGAA 4 cut(s) 89, 185, 416, 648
TspGWI ACGGA 2 cut(s) 248, 341
TspRI CASTG 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 276
XapI RAATTY 2 cut(s) 96, 471
ZrmI AGTACT 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.