AT4G39780

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013978
Physical Location & Seq
Reverse (-)
18457906 .. 18459257
1352 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G39780.1

Sequence Viewer

Length: 819 bp
ATGGCAGCCATAGATATGTTCAATAGCAACACAGATCCTTTTCAAGAAGAGCTCATGAAAGCACTTCAACCTTATACCACCAACACTGATTCTTCTTCTCCTACGTATTCAAACACAGTCTTCGGTTTCAATCAAACCACATCTCTCGGTCTAAACCAGCTCACACCTTACCAAATCCACCAAATCCAAAACCAGCTTAACCAGAGACGTAACATAATCTCTCCAAATCTAGCCCCAAAGCCTGTCCCAATGAAGAACATGACCGCTCAGAAACTCTATAGAGGAGTTAGACAAAGGCACTGGGGAAAATGGGTAGCTGAGATCCGTTTACCCAAGAACCGGACCCGACTCTGGCTTGGAACTTTCGACACAGCTGAAGAAGCAGCCATGGCTTATGACCTAGCTGCTTACAAGCTAAGAGGCGAGTTCGCGAGACTTAATTTCCCACAGTTCAGACACGAGGATGGATACTACGGAGGAGGTAGCTGTTTCAATCCTCTTCATTCCTCTGTCGACGCAAAGCTCCAAGAGATTTGTCAGAGCTTGAGAAAAACAGAGGATATTGACCTCCCCTGTTCTGAAACAGAGCTTTTCCCGCCAAAAACAGAGTATCAAGAAAGTGAATATGGGTTCTTGAGATCTGATGAGAATTCGTTTTCAGATGAGTCTCATGTGGAATCTTCTTCGCCGGAATCTGGTATTACTACGTTCTTGGACTTTTCGGATTCTGGATTTGATGAGATTGGGAGTTTCGGGCTGGAGAAGTTTCCTTCTGTGGAGATTGATTGGGATGCGATTAGCAAATTGTCCGAATCTTAA

Protein Analysis

272

Amino Acids

30.95

Weight (kDa)

4.86

Isoelectric Point (pI)

56.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 92 - 141 1.5e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22200 AT4G39780
fragaria_vesca FvH4_1g21210
malus_domestica MD15G1326800.v1.1
prunus_persica Prupe.6G182200_v2.0.a1
pyrus_communis pycom01g05500 pycom395g00070
rosa_chinensis RchiOBHm_Chr2g0115041
rosa_laevigata RLG00000018150
rosa_multiflora Rmu_sc0000784.1_g000017
rosa_roxburghii Rroxscaffold_2G00130510
rosa_rugosa Rorug02G0192600
rosa_samantha Rh2AG251200 Rh2BG260700 Rh2CG255800 Rh2DG259200
rosa_wichuraiana Rw2G019610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 266
AccI GTMKAC 1 cut(s) 513
AccII CGCG 1 cut(s) 431
AciI CCGC 2 cut(s) 264, 596
AclWI GGATC 2 cut(s) 29, 316
AcsI RAATTY 1 cut(s) 649
AcuI CTGAAG 1 cut(s) 396
AfiI CCNNNNNNNGG 3 cut(s) 339, 351, 695
AgsI TTSAA 6 cut(s) 22, 44, 68, 111, 130, 493
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 3 cut(s) 199, 427, 672
AlwI GGATC 2 cut(s) 29, 316
ApeKI GCWGC 3 cut(s) 5, 383, 404
ApoI RAATTY 1 cut(s) 649
AspS9I GGNCC 1 cut(s) 342
AvaII GGWCC 1 cut(s) 342
BanII GRGCYC 1 cut(s) 54
BauI CACGAG 1 cut(s) 458
BbsI GAAGAC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 3 cut(s) 17, 391, 395
BccI CCATC 1 cut(s) 458
BciVI GTATCC 1 cut(s) 461
BcoDI GTCTC 3 cut(s) 199, 427, 672
BfaI CTAG 2 cut(s) 230, 401
BfmI CTRYAG 1 cut(s) 277
BfuI GTATCC 1 cut(s) 461
BglII AGATCT 1 cut(s) 638
BisI GCNGC 3 cut(s) 6, 384, 405
BlsI GCNGC 3 cut(s) 7, 385, 406
Bme18I GGWCC 1 cut(s) 342
BmgT120I GGNCC 1 cut(s) 342
BmiI GGNNCC 1 cut(s) 344
BmrI ACTGGG 1 cut(s) 310
BmsI GCATC 1 cut(s) 781
BmuI ACTGGG 1 cut(s) 310
BpiI GAAGAC 1 cut(s) 112
BpmI CTGGAG 1 cut(s) 779
BpuEI CTTGAG 2 cut(s) 565, 655
BsaAI YACGTR 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 387
BsaWI WCCGGW 1 cut(s) 339
Bsc4I CCNNNNNNNGG 3 cut(s) 339, 351, 695
Bse1I ACTGG 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 2 cut(s) 469, 796
BseLI CCNNNNNNNGG 3 cut(s) 339, 351, 695
BseMII CTCAG 2 cut(s) 281, 309
BseNI ACTGG 1 cut(s) 305
BseRI GAGGAG 2 cut(s) 297, 492
BseXI GCAGC 3 cut(s) 17, 391, 395
Bsh1236I CGCG 1 cut(s) 431
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 2 cut(s) 340, 689
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 3 cut(s) 339, 351, 695
BsmAI GTCTC 3 cut(s) 199, 427, 672
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 3 cut(s) 34, 321, 638
Bsp19I CCATGG 1 cut(s) 387
Bsp68I TCGCGA 1 cut(s) 431
BspACI CCGC 2 cut(s) 264, 596
BspCNI CTCAG 2 cut(s) 280, 310
BspFNI CGCG 1 cut(s) 431
BspHI TCATGA 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 344
BspPI GGATC 2 cut(s) 29, 316
BspQI GCTCTTC 1 cut(s) 42
BsrBI CCGCTC 1 cut(s) 266
BsrI ACTGG 1 cut(s) 305
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 3 cut(s) 34, 321, 638
BssSI CACGAG 1 cut(s) 458
BssT1I CCWWGG 1 cut(s) 387
Bst2BI CACGAG 1 cut(s) 458
Bst4CI ACNGT 2 cut(s) 118, 450
Bst6I CTCTTC 2 cut(s) 42, 504
BstBAI YACGTR 1 cut(s) 105
BstDEI CTNAG 3 cut(s) 267, 318, 416
BstDSI CCRYGG 1 cut(s) 387
BstF5I GGATG 2 cut(s) 469, 796
BstFNI CGCG 1 cut(s) 431
BstKTI GATC 3 cut(s) 37, 324, 641
BstMAI GTCTC 3 cut(s) 199, 427, 672
BstMBI GATC 3 cut(s) 34, 321, 638
BstMWI GCNNNNNNNGC 3 cut(s) 380, 389, 595
BstSFI CTRYAG 1 cut(s) 277
BstSNI TACGTA 1 cut(s) 105
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 3 cut(s) 17, 391, 395
BstV2I GAAGAC 1 cut(s) 112
BstX2I RGATCY 3 cut(s) 34, 321, 638
BstYI RGATCY 3 cut(s) 34, 321, 638
BsuI GTATCC 1 cut(s) 461
BtgI CCRYGG 1 cut(s) 387
BtsCI GGATG 2 cut(s) 469, 796
BtsIMutI CAGTG 2 cut(s) 84, 298
BtuMI TCGCGA 1 cut(s) 431
CciI TCATGA 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 342
CseI GACGC 1 cut(s) 524
CviAII CATG 4 cut(s) 55, 259, 388, 671
DdeI CTNAG 3 cut(s) 267, 318, 416
DpnI GATC 3 cut(s) 36, 323, 640
DpnII GATC 3 cut(s) 34, 321, 638
Eam1104I CTCTTC 2 cut(s) 42, 504
EarI CTCTTC 2 cut(s) 42, 504
Ecl136II GAGCTC 1 cut(s) 52
Eco105I TACGTA 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 387
Eco24I GRGCYC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 342
Eco53kI GAGCTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 396
EcoICRI GAGCTC 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 649
EcoT14I CCWWGG 1 cut(s) 387
EcoT38I GRGCYC 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 387
Esp3I CGTCTC 1 cut(s) 199
FaeI CATG 4 cut(s) 58, 262, 391, 674
FaqI GGGAC 1 cut(s) 230
FatI CATG 4 cut(s) 54, 258, 387, 670
FauI CCCGC 1 cut(s) 603
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 3 cut(s) 6, 384, 405
FokI GGATG 2 cut(s) 476, 803
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 3 cut(s) 6, 384, 405
FspBI CTAG 2 cut(s) 230, 401
GluI GCNGC 3 cut(s) 6, 384, 405
GsuI CTGGAG 1 cut(s) 779
HapII CCGG 2 cut(s) 340, 689
HgaI GACGC 1 cut(s) 524
Hin1II CATG 4 cut(s) 58, 262, 391, 674
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HinfI GANTC 7 cut(s) 89, 348, 665, 677, 692, 725, 812
HpaII CCGG 2 cut(s) 340, 689
Hpy166II GTNNAC 2 cut(s) 329, 514
Hpy188I TCNGA 8 cut(s) 270, 455, 540, 580, 643, 661, 724, 811
Hpy188III TCNNGA 6 cut(s) 44, 55, 430, 614, 634, 729
Hpy8I GTNNAC 2 cut(s) 329, 514
Hpy99I CGWCG 1 cut(s) 518
HpyAV CCTTC 1 cut(s) 780
HpyCH4III ACNGT 2 cut(s) 118, 450
HpyCH4IV ACGT 3 cut(s) 104, 208, 707
HpyF10VI GCNNNNNNNGC 3 cut(s) 380, 389, 595
HpyF3I CTNAG 3 cut(s) 267, 318, 416
HpySE526I ACGT 3 cut(s) 104, 208, 707
Hsp92II CATG 4 cut(s) 58, 262, 391, 674
Kzo9I GATC 3 cut(s) 34, 321, 638
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 528
Lsp1109I GCAGC 3 cut(s) 17, 391, 395
LweI GCATC 1 cut(s) 781
MaeI CTAG 2 cut(s) 230, 401
MaeII ACGT 3 cut(s) 104, 208, 707
MaeIII GTNAC 1 cut(s) 209
MalI GATC 3 cut(s) 36, 323, 640
MbiI CCGCTC 1 cut(s) 266
MboI GATC 3 cut(s) 34, 321, 638
MboII GAAGA 9 cut(s) 59, 84, 87, 112, 265, 389, 491, 672, 675
MflI RGATCY 3 cut(s) 34, 321, 638
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 3 cut(s) 439, 649, 803
MlyI GAGTC 2 cut(s) 342, 674
MnlI CCTC 9 cut(s) 275, 413, 454, 470, 473, 507, 517, 550, 578
MseI TTAA 3 cut(s) 198, 438, 817
MslI CAYNNNNRTG 2 cut(s) 14, 462
MspA1I CMGCKG 1 cut(s) 374
MspI CCGG 2 cut(s) 340, 689
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 3 cut(s) 380, 389, 595
NcoI CCATGG 1 cut(s) 387
NdeII GATC 3 cut(s) 34, 321, 638
NlaIII CATG 4 cut(s) 58, 262, 391, 674
NlaIV GGNNCC 1 cut(s) 344
NruI TCGCGA 1 cut(s) 431
PagI TCATGA 1 cut(s) 54
PciSI GCTCTTC 1 cut(s) 42
PfeI GAWTC 5 cut(s) 89, 677, 692, 725, 812
PkrI GCNGC 3 cut(s) 7, 385, 406
PleI GAGTC 2 cut(s) 342, 673
PpsI GAGTC 2 cut(s) 342, 673
Ppu21I YACGTR 1 cut(s) 105
Psp124BI GAGCTC 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 344
PspPI GGNCC 1 cut(s) 342
PsuI RGATCY 3 cut(s) 34, 321, 638
PvuII CAGCTG 1 cut(s) 374
RruI TCGCGA 1 cut(s) 431
RseI CAYNNNNRTG 2 cut(s) 14, 462
SacI GAGCTC 1 cut(s) 54
SalI GTCGAC 1 cut(s) 512
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 3 cut(s) 198, 438, 817
SatI GCNGC 3 cut(s) 6, 384, 405
Sau3AI GATC 3 cut(s) 34, 321, 638
Sau96I GGNCC 1 cut(s) 342
SchI GAGTC 2 cut(s) 342, 674
SduI GDGCHC 1 cut(s) 54
SfaNI GCATC 1 cut(s) 781
SfcI CTRYAG 1 cut(s) 277
SinI GGWCC 1 cut(s) 342
SmiMI CAYNNNNRTG 2 cut(s) 14, 462
SmlI CTYRAG 2 cut(s) 544, 634
SmoI CTYRAG 2 cut(s) 544, 634
SnaBI TACGTA 1 cut(s) 105
Sse9I AATT 3 cut(s) 439, 649, 803
SsiI CCGC 2 cut(s) 264, 596
SspMI CTAG 2 cut(s) 230, 401
SstI GAGCTC 1 cut(s) 54
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 2 cut(s) 118, 450
TaiI ACGT 3 cut(s) 107, 211, 710
TaqI TCGA 2 cut(s) 366, 513
TaqII GACCGA 1 cut(s) 137
TasI AATT 3 cut(s) 439, 649, 803
TfiI GAWTC 5 cut(s) 89, 677, 692, 725, 812
Tru1I TTAA 3 cut(s) 198, 438, 817
Tru9I TTAA 3 cut(s) 198, 438, 817
TscAI CASTG 2 cut(s) 91, 305
TseI GCWGC 3 cut(s) 5, 383, 404
TspDTI ATGAA 3 cut(s) 71, 266, 491
TspGWI ACGGA 2 cut(s) 314, 489
TspRI CASTG 2 cut(s) 91, 305
VpaK11BI GGWCC 1 cut(s) 342
XapI RAATTY 1 cut(s) 649
XmiI GTMKAC 1 cut(s) 513
XspI CTAG 2 cut(s) 230, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.