Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013978

Physical Location & Seq

Genomic Coordinates Forward (+)

18909433 .. 18911498

Gene Structure 2066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G182200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCAACAGCTATAGATCTTTACAGCAGCAGCTCAATGACACCAGATTTATCAGATTCCTTGAGGGAGGATCAGCTCATGAAAGCACTTATGCCTTTTATGAAAAGTGTTTCATCAACCTCTTCTTTGACATCTATTTCTTCTTCTATTTCTTCACCAACCTCTCCTTCTACTTCTTCTTCCTTTTCTTCCTACCCTTCTTACACTTACCATCCTCCACTCTACTCTACTCAGCCCAATTTGTACCCTGACTTTTGCTCGCCATCCACAACCCACATGTTTGATCAAGTGAGTTTTGAGCAAACAGGTTCAATAGGGCTTAACCAACTTACCCCATCTCAAATTCTTCAAATCCAAACCCAAATGGTCCTCCAGCAACAGCAGGAACACCAACAAAAGGAACAAATTGCTGCTCTTGCTTCTCCAGCTTCACTGCAAAACCAATATCAGCACCAAAACCCTCGCACCCCGAAATTCCTCAGCCCAAAAGCCATCCCAATGAAGCAAGTTGGTGCTCCCTCCAAACCCACAAAGCTCTACAGGGGAGTGAGGCAGAGGCATTGGGGCAAATGGGTTGCTGAGATTAGACTTCCCAAGAACCGAACCCGCCTATGGCTTGGTACCTTTGACACTGCTGAAGAAGCGGCTTTAGCTTATGATAAAGCTGCTTATAAGCTCAGGGGAGACTTTGCTCGGCTCAATTTCCCTCATCTCAAGCACCAAGGGGCTCATGTCTCCGGCGATTTTGGCCACTACAAGCCTCTCCATTCCTCAGTGGATGCCAAGCTCCAAGCAATTTGCCAGAGTTTGGCTGCTAATTCGGCGAAACAGGGGAAAACAGGGGAGCTCTGTTCTGTGGCAGAGAGAAAGCCAGCGATAACATCTCCTAAAGAGGTTTCATTGAAAACTGAATTGAAAAGTGAATGGGAATTAACTGGTGTAGAGTGCTATAGACCGGAGATCTCATCTTCGCCCTCTCGGTCCGTTGAGTCTTCAGCCGGGTCCTCTTCGCCGGAATCCGACATTACCTTCTTGGAATTTTCGGATTCTCAATGGGATGAGGCTGAGAATTTCGGACTAGAGAAGTACCCTTCAGTGGAGATTGACTGGTCTGCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

374

Amino Acids

41.33

Weight (kDa)

6.56

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22200 AT4G39780
fragaria_vesca	FvH4_1g21210
malus_domestica	MD15G1326800.v1.1
prunus_persica	Prupe.6G182200_v2.0.a1
pyrus_communis	pycom01g05500 pycom395g00070
rosa_chinensis	RchiOBHm_Chr2g0115041
rosa_laevigata	RLG00000018150
rosa_multiflora	Rmu_sc0000784.1_g000017
rosa_roxburghii	Rroxscaffold_2G00130510
rosa_rugosa	Rorug02G0192600
rosa_samantha	Rh2AG251200 Rh2BG260700 Rh2CG255800 Rh2DG259200
rosa_wichuraiana	Rw2G019610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	672
Acc65I	GGTACC	1 cut(s)	620
AccB1I	GGYRCC	1 cut(s)	620
AccB7I	CCANNNNNTGG	1 cut(s)	808
AciI	CCGC	2 cut(s)	607, 644
AclWI	GGATC	1 cut(s)	78
AcoI	YGGCCR	1 cut(s)	748
AcsI	RAATTY	4 cut(s)	342, 473, 1037, 1069
AcuI	CTGAAG	3 cut(s)	657, 978, 1077
AfaI	GTAC	3 cut(s)	245, 622, 1088
AfiI	CCNNNNNNNGG	4 cut(s)	397, 612, 808, 1096
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	4 cut(s)	312, 350, 904, 916
AjuI	GAANNNNNNNTTGG	2 cut(s)	151, 183
Alw21I	GWGCWC	2 cut(s)	517, 849
Alw26I	GTCTC	2 cut(s)	678, 739
AlwI	GGATC	1 cut(s)	78
AoxI	GGCC	1 cut(s)	748
ApeKI	GCWGC	5 cut(s)	27, 30, 410, 665, 812
ApoI	RAATTY	4 cut(s)	342, 473, 1037, 1069
Asp718I	GGTACC	1 cut(s)	620
AspS9I	GGNCC	3 cut(s)	367, 981, 1002
AsuC2I	CCSGG	1 cut(s)	1000
AsuHPI	GGTGA	1 cut(s)	147
AvaII	GGWCC	3 cut(s)	367, 981, 1002
BalI	TGGCCA	1 cut(s)	750
BanI	GGYRCC	1 cut(s)	620
BanII	GRGCYC	2 cut(s)	730, 849
BbsI	GAAGAC	1 cut(s)	984
Bbv12I	GWGCWC	2 cut(s)	517, 849
BbvCI	CCTCAGC	1 cut(s)	479
BbvI	GCAGC	5 cut(s)	39, 42, 397, 652, 799
BccI	CCATC	4 cut(s)	219, 271, 343, 500
BclI	TGATCA	1 cut(s)	283
BcnI	CCSGG	1 cut(s)	1000
BcoDI	GTCTC	2 cut(s)	678, 739
BfaI	CTAG	1 cut(s)	1079
BfmI	CTRYAG	3 cut(s)	12, 538, 949
BglII	AGATCT	2 cut(s)	16, 960
BisI	GCNGC	6 cut(s)	28, 31, 411, 645, 666, 813
BlsI	GCNGC	6 cut(s)	29, 32, 412, 646, 667, 814
Bme1390I	CCNGG	1 cut(s)	1000
Bme18I	GGWCC	3 cut(s)	367, 981, 1002
BmgT120I	GGNCC	3 cut(s)	367, 981, 1002
BmiI	GGNNCC	2 cut(s)	622, 1003
BmrFI	CCNGG	1 cut(s)	1000
BmsI	GCATC	1 cut(s)	769
BpiI	GAAGAC	1 cut(s)	984
BpmI	CTGGAG	2 cut(s)	356, 408
Bpu10I	CCTNAGC	2 cut(s)	479, 677
BpuEI	CTTGAG	2 cut(s)	82, 698
BpuMI	CCSGG	1 cut(s)	1000
BsaJI	CCNNGG	1 cut(s)	721
BsaWI	WCCGGW	1 cut(s)	955
Bsc4I	CCNNNNNNNGG	4 cut(s)	397, 612, 808, 1096
Bse1I	ACTGG	2 cut(s)	940, 1112
BseDI	CCNNGG	1 cut(s)	721
BseGI	GGATG	5 cut(s)	211, 263, 492, 784, 1063
BseLI	CCNNNNNNNGG	4 cut(s)	397, 612, 808, 1096
BseMII	CTCAG	6 cut(s)	245, 493, 570, 691, 786, 1056
BseNI	ACTGG	2 cut(s)	940, 1112
BseXI	GCAGC	5 cut(s)	39, 42, 397, 652, 799
BshFI	GGCC	1 cut(s)	750
BshNI	GGYRCC	1 cut(s)	620
BsiHKAI	GWGCWC	2 cut(s)	517, 849
BsiSI	CCGG	4 cut(s)	738, 956, 999, 1013
BslI	CCNNNNNNNGG	4 cut(s)	397, 612, 808, 1096
BsmAI	GTCTC	2 cut(s)	678, 739
BsnI	GGCC	1 cut(s)	750
Bsp1286I	GDGCHC	3 cut(s)	517, 730, 849
Bsp143I	GATC	4 cut(s)	16, 70, 283, 960
BspACI	CCGC	2 cut(s)	607, 644
BspANI	GGCC	1 cut(s)	750
BspCNI	CTCAG	6 cut(s)	244, 492, 571, 690, 785, 1057
BspHI	TCATGA	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	622, 1003
BspPI	GGATC	1 cut(s)	78
BspT107I	GGYRCC	1 cut(s)	620
BsrI	ACTGG	2 cut(s)	940, 1112
BssECI	CCNNGG	1 cut(s)	721
BssMI	GATC	4 cut(s)	16, 70, 283, 960
BssT1I	CCWWGG	1 cut(s)	721
Bst6I	CTCTTC	2 cut(s)	127, 1012
BstC8I	GCNNGC	2 cut(s)	260, 873
BstDEI	CTNAG	6 cut(s)	231, 479, 579, 677, 772, 1065
BstF5I	GGATG	5 cut(s)	211, 263, 492, 784, 1063
BstKTI	GATC	4 cut(s)	19, 73, 286, 963
BstMAI	GTCTC	2 cut(s)	678, 739
BstMBI	GATC	4 cut(s)	16, 70, 283, 960
BstMWI	GCNNNNNNNGC	6 cut(s)	416, 425, 641, 650, 747, 821
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	998
BstSFI	CTRYAG	3 cut(s)	12, 538, 949
BstV1I	GCAGC	5 cut(s)	39, 42, 397, 652, 799
BstV2I	GAAGAC	1 cut(s)	984
BstX2I	RGATCY	2 cut(s)	16, 960
BstYI	RGATCY	2 cut(s)	16, 960
BsuRI	GGCC	1 cut(s)	750
BtsCI	GGATG	5 cut(s)	211, 263, 492, 784, 1063
BtsI	GCAGTG	2 cut(s)	431, 630
BtsIMutI	CAGTG	4 cut(s)	431, 630, 780, 1101
Cac8I	GCNNGC	2 cut(s)	260, 873
CciI	TCATGA	1 cut(s)	78
Cfr13I	GGNCC	3 cut(s)	367, 981, 1002
CpoI	CGGWCCG	1 cut(s)	981
Csp6I	GTAC	3 cut(s)	244, 621, 1087
CspI	CGGWCCG	1 cut(s)	981
CviAII	CATG	3 cut(s)	79, 277, 731
CviQI	GTAC	3 cut(s)	244, 621, 1087
DdeI	CTNAG	6 cut(s)	231, 479, 579, 677, 772, 1065
DpnI	GATC	4 cut(s)	18, 72, 285, 962
DpnII	GATC	4 cut(s)	16, 70, 283, 960
EaeI	YGGCCR	1 cut(s)	748
Eam1104I	CTCTTC	2 cut(s)	127, 1012
EarI	CTCTTC	2 cut(s)	127, 1012
Ecl136II	GAGCTC	1 cut(s)	847
Eco130I	CCWWGG	1 cut(s)	721
Eco24I	GRGCYC	2 cut(s)	730, 849
Eco47I	GGWCC	3 cut(s)	367, 981, 1002
Eco53kI	GAGCTC	1 cut(s)	847
Eco57I	CTGAAG	3 cut(s)	657, 978, 1077
EcoICRI	GAGCTC	1 cut(s)	847
EcoO109I	RGGNCCY	1 cut(s)	1002
EcoT14I	CCWWGG	1 cut(s)	721
EcoT38I	GRGCYC	2 cut(s)	730, 849
ErhI	CCWWGG	1 cut(s)	721
FaeI	CATG	3 cut(s)	82, 280, 734
FatI	CATG	3 cut(s)	78, 276, 730
FauI	CCCGC	1 cut(s)	614
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	6 cut(s)	28, 31, 411, 645, 666, 813
FokI	GGATG	5 cut(s)	198, 250, 479, 791, 1070
FriOI	GRGCYC	2 cut(s)	730, 849
Fsp4HI	GCNGC	6 cut(s)	28, 31, 411, 645, 666, 813
FspBI	CTAG	1 cut(s)	1079
GluI	GCNGC	6 cut(s)	28, 31, 411, 645, 666, 813
GsuI	CTGGAG	2 cut(s)	356, 408
HaeIII	GGCC	1 cut(s)	750
HapII	CCGG	4 cut(s)	738, 956, 999, 1013
Hin1II	CATG	3 cut(s)	82, 280, 734
HinfI	GANTC	4 cut(s)	56, 989, 1016, 1046
HpaII	CCGG	4 cut(s)	738, 956, 999, 1013
HphI	GGTGA	1 cut(s)	147
Hpy188I	TCNGA	4 cut(s)	55, 1021, 1045, 1076
Hpy188III	TCNNGA	1 cut(s)	79
HpyAV	CCTTC	4 cut(s)	177, 207, 1039, 1101
HpyCH4V	TGCA	1 cut(s)	436
HpyF10VI	GCNNNNNNNGC	6 cut(s)	416, 425, 641, 650, 747, 821
HpyF3I	CTNAG	6 cut(s)	231, 479, 579, 677, 772, 1065
Hsp92II	CATG	3 cut(s)	82, 280, 734
KpnI	GGTACC	1 cut(s)	624
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	4 cut(s)	16, 70, 283, 960
LmnI	GCTCC	3 cut(s)	520, 792, 844
Lsp1109I	GCAGC	5 cut(s)	39, 42, 397, 652, 799
LweI	GCATC	1 cut(s)	769
MaeI	CTAG	1 cut(s)	1079
MalI	GATC	4 cut(s)	18, 72, 285, 962
MboI	GATC	4 cut(s)	16, 70, 283, 960
MflI	RGATCY	2 cut(s)	16, 960
MhlI	GDGCHC	3 cut(s)	517, 730, 849
MlsI	TGGCCA	1 cut(s)	750
MluNI	TGGCCA	1 cut(s)	750
MlyI	GAGTC	1 cut(s)	998
MmeI	TCCRAC	1 cut(s)	1044
Mox20I	TGGCCA	1 cut(s)	750
MscI	TGGCCA	1 cut(s)	750
MseI	TTAA	2 cut(s)	321, 932
MslI	CAYNNNNRTG	1 cut(s)	497
Msp20I	TGGCCA	1 cut(s)	750
MspI	CCGG	4 cut(s)	738, 956, 999, 1013
MspR9I	CCNGG	1 cut(s)	1000
MwoI	GCNNNNNNNGC	6 cut(s)	416, 425, 641, 650, 747, 821
NciI	CCSGG	1 cut(s)	1000
NdeII	GATC	4 cut(s)	16, 70, 283, 960
NlaIII	CATG	3 cut(s)	82, 280, 734
NlaIV	GGNNCC	2 cut(s)	622, 1003
NmeAIII	GCCGAG	1 cut(s)	673
NspI	RCATGY	1 cut(s)	280
PagI	TCATGA	1 cut(s)	78
PciI	ACATGT	1 cut(s)	276
PfeI	GAWTC	3 cut(s)	56, 1016, 1046
PflMI	CCANNNNNTGG	1 cut(s)	808
PkrI	GCNGC	6 cut(s)	29, 32, 412, 646, 667, 814
PleI	GAGTC	1 cut(s)	997
PpsI	GAGTC	1 cut(s)	997
PpuMI	RGGWCCY	1 cut(s)	1002
PscI	ACATGT	1 cut(s)	276
PsiI	TTATAA	1 cut(s)	672
Psp124BI	GAGCTC	1 cut(s)	849
Psp5II	RGGWCCY	1 cut(s)	1002
PspN4I	GGNNCC	2 cut(s)	622, 1003
PspPI	GGNCC	3 cut(s)	367, 981, 1002
PspPPI	RGGWCCY	1 cut(s)	1002
PsuI	RGATCY	2 cut(s)	16, 960
RsaI	GTAC	3 cut(s)	245, 622, 1088
RsaNI	GTAC	3 cut(s)	244, 621, 1087
RseI	CAYNNNNRTG	1 cut(s)	497
Rsr2I	CGGWCCG	1 cut(s)	981
RsrII	CGGWCCG	1 cut(s)	981
SacI	GAGCTC	1 cut(s)	849
SaqAI	TTAA	2 cut(s)	321, 932
SatI	GCNGC	6 cut(s)	28, 31, 411, 645, 666, 813
Sau3AI	GATC	4 cut(s)	16, 70, 283, 960
Sau96I	GGNCC	3 cut(s)	367, 981, 1002
SchI	GAGTC	1 cut(s)	998
ScrFI	CCNGG	1 cut(s)	1000
SduI	GDGCHC	3 cut(s)	517, 730, 849
SfaNI	GCATC	1 cut(s)	769
SfcI	CTRYAG	3 cut(s)	12, 538, 949
SinI	GGWCC	3 cut(s)	367, 981, 1002
SmiMI	CAYNNNNRTG	1 cut(s)	497
SmlI	CTYRAG	2 cut(s)	61, 713
SmoI	CTYRAG	2 cut(s)	61, 713
SsiI	CCGC	2 cut(s)	607, 644
SspMI	CTAG	1 cut(s)	1079
SstI	GAGCTC	1 cut(s)	849
StyD4I	CCNGG	1 cut(s)	998
StyI	CCWWGG	1 cut(s)	721
TaqII	GACCGA	1 cut(s)	969
TauI	GCSGC	1 cut(s)	647
TfiI	GAWTC	3 cut(s)	56, 1016, 1046
Tru1I	TTAA	2 cut(s)	321, 932
Tru9I	TTAA	2 cut(s)	321, 932
TscAI	CASTG	4 cut(s)	438, 637, 780, 1101
TseI	GCWGC	5 cut(s)	27, 30, 410, 665, 812
TspDTI	ATGAA	5 cut(s)	95, 102, 116, 515, 888
TspGWI	ACGGA	1 cut(s)	973
TspRI	CASTG	4 cut(s)	438, 637, 780, 1101
Van91I	CCANNNNNTGG	1 cut(s)	808
VpaK11BI	GGWCC	3 cut(s)	367, 981, 1002
XapI	RAATTY	4 cut(s)	342, 473, 1037, 1069
XceI	RCATGY	1 cut(s)	280
XspI	CTAG	1 cut(s)	1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.