RchiOBHm_Chr2g0115041

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013978
Physical Location & Seq
Reverse (-)
27014350 .. 27016041
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48824

Sequence Viewer

Length: 1050 bp
ATGGCAGCAGCTGTAGATATTTACAGTAGCAGCAGCTCAATGTCACCAGATTTATCAGAGGAGCTTATGAGAGCACTTATGCCTTGTATGAACAGTGCTTCTTCAACCTCTTCTATTTCTCCACCAACATCTCCTTCCACTTCTTATTATTCTTCTTCTTCCTACACTCCATTTTACTCTTCTTATCCCAATTTGTACTCTGACTTTTGCTCAAACACCCAAATGTTCCCACAAGTGGGTTTTGAGCAAACAGGTTCATTGGGGCTTAACCAACTCACCCCATCTCAAATTCGTCAAATCGAAACCCAAATGATACTCCAACAACAACAGAAGCAGCAAATTGCAGCTCTAGCTCCACTACCAAACCAATATCACCACCAACACTCTCACACCCTCAACTTCCTTGGCCCAAAAGCAATCCCAATGAAGCAATCTGGTACTCCCAAGCCCACAAAGCTCTACAGGGGAGTGAGGCAGAGGCATTGGGGAAAATGGGTTGCTGAGATTAGACTCCCCAAGAACCGAACTCGCCTCTGGCTTGGCACATTCGAAACAGCCGAAGAAGCAGCTTTAGCTTATGATAAAGCTGCTTATAAGCTCAGGGGAGACTTTGCCAGGCTCAATTTCCCTCATCTTAAGCATCAAGGAGCTCATATCACTGGAGATTTTGGCAATTACAAGCCTCTTCCTTCCGCAGTTGACGCCAAGCTCCAAGCAATTTGCGAGAGCTTGGCTGTTAATTCGCCGAAACAGGGCAAAACAGAGGAGCTCTGTTCGGAAGCAGAGACAAAGCCAGTGATTTCAGCTCCAAAGATGGTCTTTGATGATTCATCGAGTACAGATTTGAAAAGAGAATGGGACTCTCCTAAATTGGAGGCCATTTCATGGTCATCTTCACCCTCTCGATCCTGCGATGAGTCCTCAGCCGGGTCATCTTCACCGGAATCTGACATTACATTCTTGGATTTCTCAGATTCTCAGTGGGATGAGAATGATACTTTCGGATTGGAGAAGTACCCTTCAGTGGAGATTGATTGGTCTGCTATTTAA

Protein Analysis

349

Amino Acids

38.75

Weight (kDa)

5.66

Isoelectric Point (pI)

62.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 153 - 202 3.1e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22200 AT4G39780
fragaria_vesca FvH4_1g21210
malus_domestica MD15G1326800.v1.1
prunus_persica Prupe.6G182200_v2.0.a1
pyrus_communis pycom01g05500 pycom395g00070
rosa_chinensis RchiOBHm_Chr2g0115041
rosa_laevigata RLG00000018150
rosa_multiflora Rmu_sc0000784.1_g000017
rosa_roxburghii Rroxscaffold_2G00130510
rosa_rugosa Rorug02G0192600
rosa_samantha Rh2AG251200 Rh2BG260700 Rh2CG255800 Rh2DG259200
rosa_wichuraiana Rw2G019610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 594
AccB7I CCANNNNNTGG 1 cut(s) 885
AciI CCGC 1 cut(s) 693
AclWI GGATC 1 cut(s) 900
AcsI RAATTY 1 cut(s) 288
AcuI CTGAAG 1 cut(s) 1005
AcyI GRCGYC 1 cut(s) 702
AfaI GTAC 4 cut(s) 197, 439, 838, 1016
AfiI CCNNNNNNNGG 6 cut(s) 235, 236, 752, 885, 927, 1024
AflII CTTAAG 1 cut(s) 635
AgsI TTSAA 2 cut(s) 105, 847
AjnI CCWGG 1 cut(s) 614
AjuI GAANNNNNNNTTGG 2 cut(s) 118, 150
Alw21I GWGCWC 3 cut(s) 76, 652, 771
Alw26I GTCTC 2 cut(s) 600, 779
AlwI GGATC 1 cut(s) 900
AlwNI CAGNNNCTG 1 cut(s) 11
AoxI GGCC 2 cut(s) 406, 876
ApeKI GCWGC 8 cut(s) 5, 8, 30, 33, 334, 344, 566, 587
ApoI RAATTY 1 cut(s) 288
AspS9I GGNCC 1 cut(s) 407
AsuC2I CCSGG 1 cut(s) 928
AsuHPI GGTGA 5 cut(s) 36, 268, 365, 888, 930
AsuII TTCGAA 1 cut(s) 549
BanII GRGCYC 2 cut(s) 652, 771
Bbv12I GWGCWC 3 cut(s) 76, 652, 771
BbvCI CCTCAGC 1 cut(s) 922
BbvI GCAGC 8 cut(s) 17, 20, 42, 45, 346, 356, 574, 578
BccI CCATC 2 cut(s) 289, 808
BciT130I CCWGG 1 cut(s) 616
BcnI CCSGG 1 cut(s) 928
BcoDI GTCTC 2 cut(s) 600, 779
BfaI CTAG 1 cut(s) 350
BfmI CTRYAG 2 cut(s) 12, 460
BfrI CTTAAG 1 cut(s) 635
BisI GCNGC 8 cut(s) 6, 9, 31, 34, 335, 345, 567, 588
BlsI GCNGC 8 cut(s) 7, 10, 32, 35, 336, 346, 568, 589
Bme1390I CCNGG 2 cut(s) 616, 928
BmgT120I GGNCC 1 cut(s) 407
BmrFI CCNGG 2 cut(s) 616, 928
BmsI GCATC 1 cut(s) 649
BpmI CTGGAG 1 cut(s) 681
Bpu10I CCTNAGC 2 cut(s) 599, 922
Bpu14I TTCGAA 1 cut(s) 549
BpuMI CCSGG 1 cut(s) 928
BsaHI GRCGYC 1 cut(s) 702
BsaJI CCNNGG 1 cut(s) 403
BsaWI WCCGGW 1 cut(s) 940
Bsc4I CCNNNNNNNGG 6 cut(s) 235, 236, 752, 885, 927, 1024
Bse1I ACTGG 2 cut(s) 664, 794
BseBI CCWGG 1 cut(s) 616
BseDI CCNNGG 1 cut(s) 403
BseGI GGATG 1 cut(s) 991
BseLI CCNNNNNNNGG 6 cut(s) 235, 236, 752, 885, 927, 1024
BseMII CTCAG 5 cut(s) 492, 613, 936, 984, 992
BseNI ACTGG 2 cut(s) 664, 794
BseRI GAGGAG 2 cut(s) 74, 779
BseXI GCAGC 8 cut(s) 17, 20, 42, 45, 346, 356, 574, 578
BshFI GGCC 2 cut(s) 408, 878
BsiHKAI GWGCWC 3 cut(s) 76, 652, 771
BsiSI CCGG 2 cut(s) 927, 941
BslFI GGGAC 1 cut(s) 872
BslI CCNNNNNNNGG 6 cut(s) 235, 236, 752, 885, 927, 1024
BsmAI GTCTC 2 cut(s) 600, 779
BsmFI GGGAC 1 cut(s) 872
BsnI GGCC 2 cut(s) 408, 878
Bsp119I TTCGAA 1 cut(s) 549
Bsp1286I GDGCHC 3 cut(s) 76, 652, 771
Bsp143I GATC 1 cut(s) 905
BspACI CCGC 1 cut(s) 693
BspANI GGCC 2 cut(s) 408, 878
BspCNI CTCAG 5 cut(s) 493, 612, 935, 983, 991
BspPI GGATC 1 cut(s) 900
BspT104I TTCGAA 1 cut(s) 549
BspTI CTTAAG 1 cut(s) 635
BsrI ACTGG 2 cut(s) 664, 794
BssECI CCNNGG 1 cut(s) 403
BssMI GATC 1 cut(s) 905
BssNI GRCGYC 1 cut(s) 702
BssT1I CCWWGG 1 cut(s) 403
Bst2UI CCWGG 1 cut(s) 616
Bst4CI ACNGT 2 cut(s) 26, 95
Bst6I CTCTTC 3 cut(s) 115, 184, 690
BstACI GRCGYC 1 cut(s) 702
BstAFI CTTAAG 1 cut(s) 635
BstBI TTCGAA 1 cut(s) 549
BstDEI CTNAG 5 cut(s) 501, 599, 922, 970, 978
BstF5I GGATG 1 cut(s) 991
BstKTI GATC 1 cut(s) 908
BstMAI GTCTC 2 cut(s) 600, 779
BstMBI GATC 1 cut(s) 905
BstMWI GCNNNNNNNGC 5 cut(s) 350, 454, 563, 572, 701
BstNI CCWGG 1 cut(s) 616
BstSCI CCNGG 2 cut(s) 614, 926
BstSFI CTRYAG 2 cut(s) 12, 460
BstV1I GCAGC 8 cut(s) 17, 20, 42, 45, 346, 356, 574, 578
BsuRI GGCC 2 cut(s) 408, 878
BtgZI GCGATG 1 cut(s) 927
BtsCI GGATG 1 cut(s) 991
BtsIMutI CAGTG 5 cut(s) 100, 657, 801, 986, 1029
CaiI CAGNNNCTG 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 407
CseI GACGC 1 cut(s) 710
Csp6I GTAC 4 cut(s) 196, 438, 837, 1015
CviAII CATG 1 cut(s) 885
CviQI GTAC 4 cut(s) 196, 438, 837, 1015
DdeI CTNAG 5 cut(s) 501, 599, 922, 970, 978
DpnI GATC 1 cut(s) 907
DpnII GATC 1 cut(s) 905
Eam1104I CTCTTC 3 cut(s) 115, 184, 690
EarI CTCTTC 3 cut(s) 115, 184, 690
Ecl136II GAGCTC 2 cut(s) 650, 769
Eco130I CCWWGG 1 cut(s) 403
Eco24I GRGCYC 2 cut(s) 652, 771
Eco53kI GAGCTC 2 cut(s) 650, 769
Eco57I CTGAAG 1 cut(s) 1005
EcoICRI GAGCTC 2 cut(s) 650, 769
EcoRII CCWGG 1 cut(s) 614
EcoT14I CCWWGG 1 cut(s) 403
EcoT38I GRGCYC 2 cut(s) 652, 771
ErhI CCWWGG 1 cut(s) 403
FaeI CATG 1 cut(s) 888
FaiI YATR 7 cut(s) 68, 80, 89, 579, 594, 654, 886
FalI AAGNNNNNCTT 2 cut(s) 803, 835
FaqI GGGAC 1 cut(s) 872
FatI CATG 1 cut(s) 884
Fnu4HI GCNGC 8 cut(s) 6, 9, 31, 34, 335, 345, 567, 588
FokI GGATG 1 cut(s) 998
FriOI GRGCYC 2 cut(s) 652, 771
Fsp4HI GCNGC 8 cut(s) 6, 9, 31, 34, 335, 345, 567, 588
FspBI CTAG 1 cut(s) 350
GluI GCNGC 8 cut(s) 6, 9, 31, 34, 335, 345, 567, 588
GsuI CTGGAG 1 cut(s) 681
HaeIII GGCC 2 cut(s) 408, 878
HapII CCGG 2 cut(s) 927, 941
HgaI GACGC 1 cut(s) 710
Hin1I GRCGYC 1 cut(s) 702
Hin1II CATG 1 cut(s) 888
HincII GTYRAC 1 cut(s) 700
HindII GTYRAC 1 cut(s) 700
HinfI GANTC 6 cut(s) 510, 827, 860, 917, 944, 974
HpaII CCGG 2 cut(s) 927, 941
HphI GGTGA 5 cut(s) 36, 268, 365, 888, 930
Hpy166II GTNNAC 1 cut(s) 700
Hpy188I TCNGA 6 cut(s) 58, 202, 778, 949, 973, 1004
Hpy188III TCNNGA 1 cut(s) 903
Hpy8I GTNNAC 1 cut(s) 700
HpyAV CCTTC 3 cut(s) 144, 699, 1029
HpyCH4III ACNGT 2 cut(s) 26, 95
HpyCH4V TGCA 1 cut(s) 344
HpyF10VI GCNNNNNNNGC 5 cut(s) 350, 454, 563, 572, 701
HpyF3I CTNAG 5 cut(s) 501, 599, 922, 970, 978
Hsp92I GRCGYC 1 cut(s) 702
Hsp92II CATG 1 cut(s) 888
Kzo9I GATC 1 cut(s) 905
LmnI GCTCC 6 cut(s) 61, 358, 647, 714, 766, 811
Lsp1109I GCAGC 8 cut(s) 17, 20, 42, 45, 346, 356, 574, 578
LweI GCATC 1 cut(s) 649
MaeI CTAG 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 42
MalI GATC 1 cut(s) 907
MboI GATC 1 cut(s) 905
MhlI GDGCHC 3 cut(s) 76, 652, 771
MluCI AATT 8 cut(s) 190, 288, 339, 622, 673, 717, 739, 869
MlyI GAGTC 3 cut(s) 504, 854, 926
MmeI TCCRAC 1 cut(s) 343
MseI TTAA 4 cut(s) 267, 636, 738, 1048
MslI CAYNNNNRTG 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 11
MspCI CTTAAG 1 cut(s) 635
MspI CCGG 2 cut(s) 927, 941
MspR9I CCNGG 2 cut(s) 616, 928
MvaI CCWGG 1 cut(s) 616
MwoI GCNNNNNNNGC 5 cut(s) 350, 454, 563, 572, 701
NciI CCSGG 1 cut(s) 928
NdeII GATC 1 cut(s) 905
NlaIII CATG 1 cut(s) 888
NmuCI GTSAC 1 cut(s) 42
NspV TTCGAA 1 cut(s) 549
PcsI WCGNNNNNNNCGW 1 cut(s) 555
PfeI GAWTC 3 cut(s) 827, 944, 974
PflMI CCANNNNNTGG 1 cut(s) 885
PkrI GCNGC 8 cut(s) 7, 10, 32, 35, 336, 346, 568, 589
PleI GAGTC 3 cut(s) 504, 854, 925
PpsI GAGTC 3 cut(s) 504, 854, 925
PsiI TTATAA 1 cut(s) 594
Psp124BI GAGCTC 2 cut(s) 652, 771
Psp6I CCWGG 1 cut(s) 614
PspGI CCWGG 1 cut(s) 614
PspPI GGNCC 1 cut(s) 407
PstNI CAGNNNCTG 1 cut(s) 11
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 4 cut(s) 197, 439, 838, 1016
RsaNI GTAC 4 cut(s) 196, 438, 837, 1015
RseI CAYNNNNRTG 1 cut(s) 221
SacI GAGCTC 2 cut(s) 652, 771
SaqAI TTAA 4 cut(s) 267, 636, 738, 1048
SatI GCNGC 8 cut(s) 6, 9, 31, 34, 335, 345, 567, 588
Sau3AI GATC 1 cut(s) 905
Sau96I GGNCC 1 cut(s) 407
SchI GAGTC 3 cut(s) 504, 854, 926
ScrFI CCNGG 2 cut(s) 616, 928
SduI GDGCHC 3 cut(s) 76, 652, 771
SfaNI GCATC 1 cut(s) 649
SfcI CTRYAG 2 cut(s) 12, 460
SfuI TTCGAA 1 cut(s) 549
SmiMI CAYNNNNRTG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 635
SmoI CTYRAG 1 cut(s) 635
Sse9I AATT 8 cut(s) 190, 288, 339, 622, 673, 717, 739, 869
SsiI CCGC 1 cut(s) 693
SspMI CTAG 1 cut(s) 350
SstI GAGCTC 2 cut(s) 652, 771
StyD4I CCNGG 2 cut(s) 614, 926
StyI CCWWGG 1 cut(s) 403
TaaI ACNGT 2 cut(s) 26, 95
TaqI TCGA 4 cut(s) 300, 549, 833, 904
TasI AATT 8 cut(s) 190, 288, 339, 622, 673, 717, 739, 869
TatI WGTACW 2 cut(s) 195, 836
TfiI GAWTC 3 cut(s) 827, 944, 974
Tru1I TTAA 4 cut(s) 267, 636, 738, 1048
Tru9I TTAA 4 cut(s) 267, 636, 738, 1048
TscAI CASTG 5 cut(s) 100, 664, 801, 986, 1029
TseFI GTSAC 1 cut(s) 42
TseI GCWGC 8 cut(s) 5, 8, 30, 33, 334, 344, 566, 587
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 5 cut(s) 104, 246, 440, 819, 873
TspRI CASTG 5 cut(s) 100, 664, 801, 986, 1029
Van91I CCANNNNNTGG 1 cut(s) 885
Vha464I CTTAAG 1 cut(s) 635
XapI RAATTY 1 cut(s) 288
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.