pycom395g00070

DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00000395
OG0013978
Physical Location & Seq
Forward (+)
133616 .. 134587
972 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom395g00070.1

Sequence Viewer

Length: 972 bp
ATGGCAACATCCATAGATCTTTACAGCAGCAGCACAATGAGATCAAATTTATCAGATCCCTTGAGGGAAGATCAGCTCATGAAAGCACTTATGCCTTTTATGAAAAGTGCTTCTTCAACATCTCCTTCCACTTCTTACACTTACCCTCCTCAGAACAACCAAAACTTCAACTTGTACCCTGACTTCTTCTCAGCGCCTATGATTTCACAAGCAGGTGCTATAGGGCTTAACCAACTTACCCCATCTCAAATTCTTCAAATCCAATCCCAAATGATCCTCCAACAACACCAGCAAAAACAACAGATTTCTGCTTTTGCTTCCTCACCTGCTCACACCCTTAAGCTGCTTCATCCAAAAGCAGTTCCAATGAAGCAAGCTGGCACTCCCTCCAAACCCACAAAGCTGTACAGAGGAGTGAGGCAGAGGCATTGGGGCAAATGGGTTGCTGAGATTAGACTTCCCAGGAACCGAACCCGGCTTTGGCTTGGTACATTCGACACCGCTGAAGAAGCTGCTTTGGCTTATGATAAAGCTGCTTTTAAGCTTAGGGGAGACTTTGCTCGCCTCAATTTCCCCCATCTCAGGCACCAGGGAGCCCTTGTCTGCGGCGACTTTGGCCACTACAAGCCCCTGCATTCCTCTGTCGATGCGAAGCTCCAGGCAATATGCCAGGGCTTGGCTGCTAATTCGACGAAACAGGGGAATACAGGGGAGCCCTGTCCTGTGGCAGAGAGAAAGCCAGTGGTATCAGCTCCTTTAGAGGCTAAGATGGATGATTCAGTCAAAAGTGAATTGAAAAGCGAATGGGAGGCCTTTCCTTCGTCGTCATATTCGCCTTCTCCGTCTGATGAGTCATCTTCACCGGAATCCGACATTACCTTCTTAGATTTCTCGGATTCTCAGTGGGACGAGGCTGAGAATTTTGGATTGGAGAAGTACCCTTCAGTGGAGATTGATTGGTCTGCTATCTAA

Protein Analysis

324

Amino Acids

35.89

Weight (kDa)

6.71

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 135 - 184 1.4e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22200 AT4G39780
fragaria_vesca FvH4_1g21210
malus_domestica MD15G1326800.v1.1
prunus_persica Prupe.6G182200_v2.0.a1
pyrus_communis pycom01g05500 pycom395g00070
rosa_chinensis RchiOBHm_Chr2g0115041
rosa_laevigata RLG00000018150
rosa_multiflora Rmu_sc0000784.1_g000017
rosa_roxburghii Rroxscaffold_2G00130510
rosa_rugosa Rorug02G0192600
rosa_samantha Rh2AG251200 Rh2BG260700 Rh2CG255800 Rh2DG259200
rosa_wichuraiana Rw2G019610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 203, 334
Acc36I ACCTGC 2 cut(s) 203, 334
AccB1I GGYRCC 1 cut(s) 585
AccB7I CCANNNNNTGG 1 cut(s) 676
AciI CCGC 2 cut(s) 501, 606
AclWI GGATC 2 cut(s) 50, 268
AcoI YGGCCR 1 cut(s) 616
AcsI RAATTY 3 cut(s) 46, 249, 919
AcuI CTGAAG 2 cut(s) 525, 927
AfaI GTAC 4 cut(s) 176, 407, 490, 938
AfiI CCNNNNNNNGG 4 cut(s) 480, 582, 676, 946
AflII CTTAAG 1 cut(s) 338
AgsI TTSAA 4 cut(s) 117, 169, 257, 796
AjnI CCWGG 4 cut(s) 461, 588, 657, 669
AjuI GAANNNNNNNTTGG 4 cut(s) 463, 495, 911, 943
AluBI AGCT 9 cut(s) 76, 343, 377, 403, 512, 533, 544, 655, 752
AluI AGCT 9 cut(s) 76, 343, 377, 403, 512, 533, 544, 655, 752
Alw26I GTCTC 1 cut(s) 546
AlwI GGATC 2 cut(s) 50, 268
AoxI GGCC 2 cut(s) 616, 810
ApeKI GCWGC 6 cut(s) 27, 30, 343, 512, 533, 680
ApoI RAATTY 3 cut(s) 46, 249, 919
AspLEI GCGC 1 cut(s) 196
AsuC2I CCSGG 1 cut(s) 475
AsuHPI GGTGA 2 cut(s) 315, 852
BalI TGGCCA 1 cut(s) 618
BanI GGYRCC 1 cut(s) 585
BanII GRGCYC 2 cut(s) 598, 717
BarI GAAGNNNNNNTAC 2 cut(s) 167, 199
BbvI GCAGC 6 cut(s) 39, 42, 330, 499, 520, 667
BccI CCATC 3 cut(s) 250, 585, 763
BciT130I CCWGG 4 cut(s) 463, 590, 659, 671
BcnI CCSGG 1 cut(s) 475
BcoDI GTCTC 1 cut(s) 546
BfmI CTRYAG 1 cut(s) 219
BfoI RGCGCY 1 cut(s) 197
BfrI CTTAAG 1 cut(s) 338
BfuAI ACCTGC 2 cut(s) 203, 334
BglII AGATCT 1 cut(s) 16
BisI GCNGC 7 cut(s) 28, 31, 344, 513, 534, 607, 681
BlsI GCNGC 7 cut(s) 29, 32, 345, 514, 535, 608, 682
Bme1390I CCNGG 5 cut(s) 463, 475, 590, 659, 671
BmiI GGNNCC 4 cut(s) 467, 587, 595, 714
BmrFI CCNGG 5 cut(s) 463, 475, 590, 659, 671
BmsI GCATC 1 cut(s) 637
BpmI CTGGAG 1 cut(s) 641
Bpu10I CCTNAGC 1 cut(s) 545
BpuEI CTTGAG 1 cut(s) 82
BpuMI CCSGG 1 cut(s) 475
BsaJI CCNNGG 3 cut(s) 461, 589, 670
BsaWI WCCGGW 1 cut(s) 862
BsaXI ACNNNNNCTCC 4 cut(s) 130, 160, 585, 615
Bsc4I CCNNNNNNNGG 4 cut(s) 480, 582, 676, 946
Bse1I ACTGG 1 cut(s) 740
BseBI CCWGG 4 cut(s) 463, 590, 659, 671
BseDI CCNNGG 3 cut(s) 461, 589, 670
BseGI GGATG 3 cut(s) 8, 349, 778
BseLI CCNNNNNNNGG 4 cut(s) 480, 582, 676, 946
BseMII CTCAG 6 cut(s) 164, 204, 438, 595, 906, 914
BseNI ACTGG 1 cut(s) 740
BseRI GAGGAG 2 cut(s) 138, 426
BseXI GCAGC 6 cut(s) 39, 42, 330, 499, 520, 667
BshFI GGCC 2 cut(s) 618, 812
BshNI GGYRCC 1 cut(s) 585
BsiSI CCGG 2 cut(s) 475, 863
BslFI GGGAC 1 cut(s) 920
BslI CCNNNNNNNGG 4 cut(s) 480, 582, 676, 946
BsmAI GTCTC 1 cut(s) 546
BsmFI GGGAC 1 cut(s) 920
BsmI GAATGC 1 cut(s) 634
BsnI GGCC 2 cut(s) 618, 812
Bsp1286I GDGCHC 2 cut(s) 598, 717
Bsp1407I TGTACA 1 cut(s) 405
Bsp143I GATC 5 cut(s) 16, 41, 55, 70, 273
BspACI CCGC 2 cut(s) 501, 606
BspANI GGCC 2 cut(s) 618, 812
BspCNI CTCAG 6 cut(s) 163, 203, 439, 594, 907, 913
BspHI TCATGA 1 cut(s) 78
BspLI GGNNCC 4 cut(s) 467, 587, 595, 714
BspMI ACCTGC 2 cut(s) 203, 334
BspPI GGATC 2 cut(s) 50, 268
BspT107I GGYRCC 1 cut(s) 585
BspTI CTTAAG 1 cut(s) 338
BsrGI TGTACA 1 cut(s) 405
BsrI ACTGG 1 cut(s) 740
BssECI CCNNGG 3 cut(s) 461, 589, 670
BssMI GATC 5 cut(s) 16, 41, 55, 70, 273
Bst2UI CCWGG 4 cut(s) 463, 590, 659, 671
BstAFI CTTAAG 1 cut(s) 338
BstAUI TGTACA 1 cut(s) 405
BstC8I GCNNGC 3 cut(s) 375, 379, 562
BstDEI CTNAG 9 cut(s) 150, 190, 447, 545, 581, 765, 883, 900, 915
BstF5I GGATG 3 cut(s) 8, 349, 778
BstH2I RGCGCY 1 cut(s) 197
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 5 cut(s) 19, 44, 58, 73, 276
BstMAI GTCTC 1 cut(s) 546
BstMBI GATC 5 cut(s) 16, 41, 55, 70, 273
BstMWI GCNNNNNNNGC 3 cut(s) 509, 518, 615
BstNI CCWGG 4 cut(s) 463, 590, 659, 671
BstSCI CCNGG 5 cut(s) 461, 473, 588, 657, 669
BstSFI CTRYAG 1 cut(s) 219
BstV1I GCAGC 6 cut(s) 39, 42, 330, 499, 520, 667
BstX2I RGATCY 2 cut(s) 16, 55
BstYI RGATCY 2 cut(s) 16, 55
BsuRI GGCC 2 cut(s) 618, 812
BtsCI GGATG 3 cut(s) 8, 349, 778
BtsIMutI CAGTG 3 cut(s) 747, 908, 951
BveI ACCTGC 2 cut(s) 203, 334
Cac8I GCNNGC 3 cut(s) 375, 379, 562
CciI TCATGA 1 cut(s) 78
CfoI GCGC 1 cut(s) 196
Csp6I GTAC 4 cut(s) 175, 406, 489, 937
CviAII CATG 1 cut(s) 79
CviQI GTAC 4 cut(s) 175, 406, 489, 937
DdeI CTNAG 9 cut(s) 150, 190, 447, 545, 581, 765, 883, 900, 915
DpnI GATC 5 cut(s) 18, 43, 57, 72, 275
DpnII GATC 5 cut(s) 16, 41, 55, 70, 273
EaeI YGGCCR 1 cut(s) 616
Eco147I AGGCCT 1 cut(s) 812
Eco24I GRGCYC 2 cut(s) 598, 717
Eco57I CTGAAG 2 cut(s) 525, 927
EcoRII CCWGG 4 cut(s) 461, 588, 657, 669
EcoT38I GRGCYC 2 cut(s) 598, 717
FaeI CATG 1 cut(s) 82
FaiI YATR 9 cut(s) 14, 80, 92, 101, 200, 221, 525, 667, 829
FalI AAGNNNNNCTT 2 cut(s) 97, 129
FaqI GGGAC 1 cut(s) 920
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 7 cut(s) 28, 31, 344, 513, 534, 607, 681
FokI GGATG 2 cut(s) 336, 785
FriOI GRGCYC 2 cut(s) 598, 717
Fsp4HI GCNGC 7 cut(s) 28, 31, 344, 513, 534, 607, 681
GlaI GCGC 1 cut(s) 195
GluI GCNGC 7 cut(s) 28, 31, 344, 513, 534, 607, 681
GsuI CTGGAG 1 cut(s) 641
HaeII RGCGCY 1 cut(s) 197
HaeIII GGCC 2 cut(s) 618, 812
HapII CCGG 2 cut(s) 475, 863
HhaI GCGC 1 cut(s) 196
Hin1II CATG 1 cut(s) 82
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 4 cut(s) 776, 851, 866, 896
HpaII CCGG 2 cut(s) 475, 863
HphI GGTGA 2 cut(s) 315, 852
Hpy188I TCNGA 5 cut(s) 55, 153, 847, 871, 895
Hpy188III TCNNGA 1 cut(s) 79
Hpy99I CGWCG 2 cut(s) 694, 826
HpyAV CCTTC 5 cut(s) 135, 828, 846, 889, 951
HpyCH4V TGCA 1 cut(s) 634
HpyF10VI GCNNNNNNNGC 3 cut(s) 509, 518, 615
HpyF3I CTNAG 9 cut(s) 150, 190, 447, 545, 581, 765, 883, 900, 915
Hsp92II CATG 1 cut(s) 82
HspAI GCGC 1 cut(s) 194
Kzo9I GATC 5 cut(s) 16, 41, 55, 70, 273
LmnI GCTCC 4 cut(s) 593, 660, 712, 757
Lsp1109I GCAGC 6 cut(s) 39, 42, 330, 499, 520, 667
LweI GCATC 1 cut(s) 637
MalI GATC 5 cut(s) 18, 43, 57, 72, 275
MboI GATC 5 cut(s) 16, 41, 55, 70, 273
MboII GAAGA 6 cut(s) 80, 105, 178, 245, 518, 849
MflI RGATCY 2 cut(s) 16, 55
MhlI GDGCHC 2 cut(s) 598, 717
MlsI TGGCCA 1 cut(s) 618
MluCI AATT 6 cut(s) 46, 249, 568, 685, 791, 919
MluNI TGGCCA 1 cut(s) 618
MlyI GAGTC 1 cut(s) 860
MmeI TCCRAC 2 cut(s) 304, 894
Mox20I TGGCCA 1 cut(s) 618
MscI TGGCCA 1 cut(s) 618
MseI TTAA 3 cut(s) 228, 339, 540
Msp20I TGGCCA 1 cut(s) 618
MspA1I CMGCKG 1 cut(s) 503
MspCI CTTAAG 1 cut(s) 338
MspI CCGG 2 cut(s) 475, 863
MspR9I CCNGG 5 cut(s) 463, 475, 590, 659, 671
Mva1269I GAATGC 1 cut(s) 634
MvaI CCWGG 4 cut(s) 463, 590, 659, 671
MwoI GCNNNNNNNGC 3 cut(s) 509, 518, 615
NciI CCSGG 1 cut(s) 475
NdeII GATC 5 cut(s) 16, 41, 55, 70, 273
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 4 cut(s) 467, 587, 595, 714
PagI TCATGA 1 cut(s) 78
PaqCI CACCTGC 2 cut(s) 203, 334
PceI AGGCCT 1 cut(s) 812
PcsI WCGNNNNNNNCGW 1 cut(s) 839
PctI GAATGC 1 cut(s) 634
PfeI GAWTC 3 cut(s) 776, 866, 896
PflMI CCANNNNNTGG 1 cut(s) 676
PkrI GCNGC 7 cut(s) 29, 32, 345, 514, 535, 608, 682
PleI GAGTC 1 cut(s) 859
PpsI GAGTC 1 cut(s) 859
Psp6I CCWGG 4 cut(s) 461, 588, 657, 669
PspGI CCWGG 4 cut(s) 461, 588, 657, 669
PspN4I GGNNCC 4 cut(s) 467, 587, 595, 714
PsuI RGATCY 2 cut(s) 16, 55
RsaI GTAC 4 cut(s) 176, 407, 490, 938
RsaNI GTAC 4 cut(s) 175, 406, 489, 937
SaqAI TTAA 3 cut(s) 228, 339, 540
SatI GCNGC 7 cut(s) 28, 31, 344, 513, 534, 607, 681
Sau3AI GATC 5 cut(s) 16, 41, 55, 70, 273
SchI GAGTC 1 cut(s) 860
ScrFI CCNGG 5 cut(s) 463, 475, 590, 659, 671
SduI GDGCHC 2 cut(s) 598, 717
SfaNI GCATC 1 cut(s) 637
SfcI CTRYAG 1 cut(s) 219
SmlI CTYRAG 2 cut(s) 61, 338
SmoI CTYRAG 2 cut(s) 61, 338
Sse9I AATT 6 cut(s) 46, 249, 568, 685, 791, 919
SseBI AGGCCT 1 cut(s) 812
SsiI CCGC 2 cut(s) 501, 606
StuI AGGCCT 1 cut(s) 812
StyD4I CCNGG 5 cut(s) 461, 473, 588, 657, 669
TaqI TCGA 3 cut(s) 495, 645, 689
TasI AATT 6 cut(s) 46, 249, 568, 685, 791, 919
TatI WGTACW 1 cut(s) 405
TauI GCSGC 1 cut(s) 609
TfiI GAWTC 3 cut(s) 776, 866, 896
Tru1I TTAA 3 cut(s) 228, 339, 540
Tru9I TTAA 3 cut(s) 228, 339, 540
TscAI CASTG 3 cut(s) 747, 908, 951
TseI GCWGC 6 cut(s) 27, 30, 343, 512, 533, 680
TspDTI ATGAA 4 cut(s) 95, 116, 338, 383
TspGWI ACGGA 1 cut(s) 831
TspRI CASTG 3 cut(s) 747, 908, 951
Van91I CCANNNNNTGG 1 cut(s) 676
Vha464I CTTAAG 1 cut(s) 338
XapI RAATTY 3 cut(s) 46, 249, 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.