FvH4_1g21210

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013978
Physical Location & Seq
Reverse (-)
13220000 .. 13221070
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g21210.t1

Sequence Viewer

Length: 1071 bp
ATGGCAGCAGCTATAGATACTTACAGTAGCAGCAGCTCAATGGCTCCAGATTTATCAGAGGAGCTCATGAGAGCACTTATGCCTTATATGAAAAGTTCTTCTATCTCCTCTATTTCTCCACCAACCTCTCCCTCCACTTCTTCTTCTTCTTCTGCTTCCTACACTCCATTTTACTCTTCTTCTCATCCCAATTTGCACCCTGACTTTTGCTCAAACACCCAAATGTTCTCACAAGTGGGTTTTGAGCAAACAGGTTCATTGGGGCTTAACCAACTCACCCCATCTCAAATTCATCAAATCCAAACCCAAATGATACTCCAACAACACCACCAACAGCAACAAAAGCAGCAAATCGCAGCTCTAGCTCCACTACCAAACCAATATCACCACCAGAACACTCACACCCTCAACTTCCTTGCCCCAAAAGCTGTCCCAATGAAGCAATCTAGCACTCCCAAACCCACAAAGCTCTACAGGGGAGTGAGGCAGAGGCATTGGGGCAAATGGGTTGCTGAGATTAGACTCCCCAAGAACCGAACTCGTCTCTGGCTTGGCACATTTGAAACCGCAGAAGAAGCAGCTTTAGCTTATGATAAAGCTGCTTATAAGCTCAGGGGAGACTTTGCCAGGCTCAATTTCCCACATCTCAAGCACCAAGGAGCTCACATCTCTGGAGATTTTGGCAATTACAAGCCTCTTCATGCCGCAGTTGACGCCAAGCTCGAAGCAATTTGCGAGAGCTTGGCTGTTAATGCGCCGAAACAGACCAAAACAGAGGAGCTCTGTTCTGAAACAGAGACAAAGCCAGTGATTTCAGCACAAAAGATGGTCTTTGATGATGCCTTGAGTACTGAACGTACTGAACTGAAAACAGAGTGGGACTTCCCTAAACTGGAGGCCTTTTCATCCTCATCTTCGCCCTCTCGATCCTGTGATGAGTCCTCAGCCGGGTCATCCTCACCGGAATCAGACATTCCATTCTTGGATTTCTCAGATTCTCAGTGGGCTGAGAATGATACTTTCGGATTGGAGAAGTACCCTTCAGTGGAGATTGATTGGTCTGCTATTTGA

Protein Analysis

357

Amino Acids

39.56

Weight (kDa)

6.0

Isoelectric Point (pI)

57.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 157 - 206 3.2e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22200 AT4G39780
fragaria_vesca FvH4_1g21210
malus_domestica MD15G1326800.v1.1
prunus_persica Prupe.6G182200_v2.0.a1
pyrus_communis pycom01g05500 pycom395g00070
rosa_chinensis RchiOBHm_Chr2g0115041
rosa_laevigata RLG00000018150
rosa_multiflora Rmu_sc0000784.1_g000017
rosa_roxburghii Rroxscaffold_2G00130510
rosa_rugosa Rorug02G0192600
rosa_samantha Rh2AG251200 Rh2BG260700 Rh2CG255800 Rh2DG259200
rosa_wichuraiana Rw2G019610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 606
AciI CCGC 2 cut(s) 567, 705
AclWI GGATC 1 cut(s) 921
AcsI RAATTY 1 cut(s) 288
AcuI CTGAAG 1 cut(s) 1026
AcyI GRCGYC 1 cut(s) 714
AfaI GTAC 3 cut(s) 850, 859, 1037
AfiI CCNNNNNNNGG 3 cut(s) 892, 948, 1045
AgsI TTSAA 1 cut(s) 563
AjnI CCWGG 1 cut(s) 626
Alw21I GWGCWC 4 cut(s) 66, 76, 664, 783
Alw26I GTCTC 3 cut(s) 548, 612, 791
AlwI GGATC 1 cut(s) 921
AoxI GGCC 1 cut(s) 897
ApeKI GCWGC 8 cut(s) 5, 8, 30, 33, 346, 356, 578, 599
ApoI RAATTY 1 cut(s) 288
AspLEI GCGC 1 cut(s) 757
AsuC2I CCSGG 1 cut(s) 949
AsuHPI GGTGA 3 cut(s) 268, 377, 951
BanII GRGCYC 3 cut(s) 66, 664, 783
Bbv12I GWGCWC 4 cut(s) 66, 76, 664, 783
BbvCI CCTCAGC 1 cut(s) 943
BbvI GCAGC 8 cut(s) 17, 20, 42, 45, 358, 368, 586, 590
BccI CCATC 2 cut(s) 289, 820
BciT130I CCWGG 1 cut(s) 628
BcnI CCSGG 1 cut(s) 949
BcoDI GTCTC 3 cut(s) 548, 612, 791
BfaI CTAG 2 cut(s) 362, 447
BfmI CTRYAG 2 cut(s) 12, 472
BisI GCNGC 9 cut(s) 6, 9, 31, 34, 347, 357, 579, 600, 705
BlsI GCNGC 9 cut(s) 7, 10, 32, 35, 348, 358, 580, 601, 706
BmcAI AGTACT 1 cut(s) 850
Bme1390I CCNGG 2 cut(s) 628, 949
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 2 cut(s) 628, 949
BmsI GCATC 1 cut(s) 829
BpmI CTGGAG 3 cut(s) 30, 693, 914
Bpu10I CCTNAGC 2 cut(s) 611, 943
BpuEI CTTGAG 2 cut(s) 632, 865
BpuMI CCSGG 1 cut(s) 949
BsaHI GRCGYC 1 cut(s) 714
BsaJI CCNNGG 1 cut(s) 655
BsaWI WCCGGW 1 cut(s) 961
Bsc4I CCNNNNNNNGG 3 cut(s) 892, 948, 1045
Bse1I ACTGG 2 cut(s) 806, 897
BseBI CCWGG 1 cut(s) 628
BseDI CCNNGG 1 cut(s) 655
BseGI GGATG 3 cut(s) 184, 905, 953
BseLI CCNNNNNNNGG 3 cut(s) 892, 948, 1045
BseMII CTCAG 6 cut(s) 504, 625, 957, 999, 1005, 1013
BseNI ACTGG 2 cut(s) 806, 897
BseRI GAGGAG 3 cut(s) 74, 97, 791
BseXI GCAGC 8 cut(s) 17, 20, 42, 45, 358, 368, 586, 590
BshFI GGCC 1 cut(s) 899
BsiHKAI GWGCWC 4 cut(s) 66, 76, 664, 783
BsiSI CCGG 2 cut(s) 948, 962
BslFI GGGAC 2 cut(s) 416, 893
BslI CCNNNNNNNGG 3 cut(s) 892, 948, 1045
BsmAI GTCTC 3 cut(s) 548, 612, 791
BsmBI CGTCTC 1 cut(s) 548
BsmFI GGGAC 2 cut(s) 416, 893
BsnI GGCC 1 cut(s) 899
Bsp1286I GDGCHC 4 cut(s) 66, 76, 664, 783
Bsp143I GATC 1 cut(s) 926
BspACI CCGC 2 cut(s) 567, 705
BspANI GGCC 1 cut(s) 899
BspCNI CTCAG 6 cut(s) 505, 624, 956, 1000, 1004, 1012
BspHI TCATGA 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 45
BspPI GGATC 1 cut(s) 921
BsrI ACTGG 2 cut(s) 806, 897
BssECI CCNNGG 1 cut(s) 655
BssMI GATC 1 cut(s) 926
BssNI GRCGYC 1 cut(s) 714
BssT1I CCWWGG 1 cut(s) 655
Bst2UI CCWGG 1 cut(s) 628
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 2 cut(s) 181, 702
BstACI GRCGYC 1 cut(s) 714
BstDEI CTNAG 6 cut(s) 513, 611, 943, 991, 999, 1008
BstF5I GGATG 3 cut(s) 184, 905, 953
BstHHI GCGC 1 cut(s) 757
BstKTI GATC 1 cut(s) 929
BstMAI GTCTC 3 cut(s) 548, 612, 791
BstMBI GATC 1 cut(s) 926
BstMWI GCNNNNNNNGC 7 cut(s) 343, 362, 425, 575, 584, 713, 752
BstNI CCWGG 1 cut(s) 628
BstSCI CCNGG 2 cut(s) 626, 947
BstSFI CTRYAG 2 cut(s) 12, 472
BstV1I GCAGC 8 cut(s) 17, 20, 42, 45, 358, 368, 586, 590
BsuRI GGCC 1 cut(s) 899
BtsCI GGATG 3 cut(s) 184, 905, 953
BtsIMutI CAGTG 3 cut(s) 813, 1007, 1050
CciI TCATGA 1 cut(s) 66
CfoI GCGC 1 cut(s) 757
CseI GACGC 1 cut(s) 722
Csp6I GTAC 3 cut(s) 849, 858, 1036
CviAII CATG 2 cut(s) 67, 701
CviQI GTAC 3 cut(s) 849, 858, 1036
DdeI CTNAG 6 cut(s) 513, 611, 943, 991, 999, 1008
DpnI GATC 1 cut(s) 928
DpnII GATC 1 cut(s) 926
Eam1104I CTCTTC 2 cut(s) 181, 702
EarI CTCTTC 2 cut(s) 181, 702
Ecl136II GAGCTC 3 cut(s) 64, 662, 781
Eco130I CCWWGG 1 cut(s) 655
Eco147I AGGCCT 1 cut(s) 899
Eco24I GRGCYC 3 cut(s) 66, 664, 783
Eco53kI GAGCTC 3 cut(s) 64, 662, 781
Eco57I CTGAAG 1 cut(s) 1026
EcoICRI GAGCTC 3 cut(s) 64, 662, 781
EcoRII CCWGG 1 cut(s) 626
EcoT14I CCWWGG 1 cut(s) 655
EcoT38I GRGCYC 3 cut(s) 66, 664, 783
ErhI CCWWGG 1 cut(s) 655
Esp3I CGTCTC 1 cut(s) 548
FaeI CATG 2 cut(s) 70, 704
FaiI YATR 8 cut(s) 14, 68, 80, 87, 89, 591, 606, 702
FalI AAGNNNNNCTT 2 cut(s) 815, 847
FaqI GGGAC 2 cut(s) 416, 893
FatI CATG 2 cut(s) 66, 700
Fnu4HI GCNGC 9 cut(s) 6, 9, 31, 34, 347, 357, 579, 600, 705
FokI GGATG 3 cut(s) 171, 892, 940
FriOI GRGCYC 3 cut(s) 66, 664, 783
Fsp4HI GCNGC 9 cut(s) 6, 9, 31, 34, 347, 357, 579, 600, 705
FspBI CTAG 2 cut(s) 362, 447
GlaI GCGC 1 cut(s) 756
GluI GCNGC 9 cut(s) 6, 9, 31, 34, 347, 357, 579, 600, 705
GsuI CTGGAG 3 cut(s) 30, 693, 914
HaeIII GGCC 1 cut(s) 899
HapII CCGG 2 cut(s) 948, 962
HgaI GACGC 1 cut(s) 722
HhaI GCGC 1 cut(s) 757
Hin1I GRCGYC 1 cut(s) 714
Hin1II CATG 2 cut(s) 70, 704
Hin6I GCGC 1 cut(s) 755
HinP1I GCGC 1 cut(s) 755
HincII GTYRAC 1 cut(s) 712
HindII GTYRAC 1 cut(s) 712
HinfI GANTC 4 cut(s) 522, 938, 965, 995
HpaII CCGG 2 cut(s) 948, 962
HphI GGTGA 3 cut(s) 268, 377, 951
Hpy166II GTNNAC 1 cut(s) 712
Hpy188I TCNGA 5 cut(s) 58, 790, 970, 994, 1025
Hpy188III TCNNGA 4 cut(s) 47, 67, 672, 924
Hpy8I GTNNAC 1 cut(s) 712
HpyAV CCTTC 1 cut(s) 1050
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4IV ACGT 1 cut(s) 856
HpyCH4V TGCA 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 7 cut(s) 343, 362, 425, 575, 584, 713, 752
HpyF3I CTNAG 6 cut(s) 513, 611, 943, 991, 999, 1008
HpySE526I ACGT 1 cut(s) 856
Hsp92I GRCGYC 1 cut(s) 714
Hsp92II CATG 2 cut(s) 70, 704
HspAI GCGC 1 cut(s) 755
Kzo9I GATC 1 cut(s) 926
LmnI GCTCC 5 cut(s) 49, 61, 370, 659, 778
Lsp1109I GCAGC 8 cut(s) 17, 20, 42, 45, 358, 368, 586, 590
LweI GCATC 1 cut(s) 829
MaeI CTAG 2 cut(s) 362, 447
MaeII ACGT 1 cut(s) 856
MalI GATC 1 cut(s) 928
MboI GATC 1 cut(s) 926
MhlI GDGCHC 4 cut(s) 66, 76, 664, 783
MluCI AATT 5 cut(s) 190, 288, 634, 685, 729
MlyI GAGTC 2 cut(s) 516, 947
MmeI TCCRAC 1 cut(s) 343
MseI TTAA 2 cut(s) 267, 750
MslI CAYNNNNRTG 1 cut(s) 221
MspI CCGG 2 cut(s) 948, 962
MspR9I CCNGG 2 cut(s) 628, 949
MvaI CCWGG 1 cut(s) 628
MwoI GCNNNNNNNGC 7 cut(s) 343, 362, 425, 575, 584, 713, 752
NciI CCSGG 1 cut(s) 949
NdeII GATC 1 cut(s) 926
NlaIII CATG 2 cut(s) 70, 704
NlaIV GGNNCC 1 cut(s) 45
PagI TCATGA 1 cut(s) 66
PceI AGGCCT 1 cut(s) 899
PcsI WCGNNNNNNNCGW 1 cut(s) 720
PfeI GAWTC 2 cut(s) 965, 995
PkrI GCNGC 9 cut(s) 7, 10, 32, 35, 348, 358, 580, 601, 706
PleI GAGTC 2 cut(s) 516, 946
PpsI GAGTC 2 cut(s) 516, 946
PsiI TTATAA 1 cut(s) 606
Psp124BI GAGCTC 3 cut(s) 66, 664, 783
Psp6I CCWGG 1 cut(s) 626
PspGI CCWGG 1 cut(s) 626
PspN4I GGNNCC 1 cut(s) 45
RsaI GTAC 3 cut(s) 850, 859, 1037
RsaNI GTAC 3 cut(s) 849, 858, 1036
RseI CAYNNNNRTG 1 cut(s) 221
SacI GAGCTC 3 cut(s) 66, 664, 783
SaqAI TTAA 2 cut(s) 267, 750
SatI GCNGC 9 cut(s) 6, 9, 31, 34, 347, 357, 579, 600, 705
Sau3AI GATC 1 cut(s) 926
ScaI AGTACT 1 cut(s) 850
SchI GAGTC 2 cut(s) 516, 947
ScrFI CCNGG 2 cut(s) 628, 949
SduI GDGCHC 4 cut(s) 66, 76, 664, 783
SfaNI GCATC 1 cut(s) 829
SfcI CTRYAG 2 cut(s) 12, 472
SmiMI CAYNNNNRTG 1 cut(s) 221
SmlI CTYRAG 2 cut(s) 647, 844
SmoI CTYRAG 2 cut(s) 647, 844
Sse9I AATT 5 cut(s) 190, 288, 634, 685, 729
SseBI AGGCCT 1 cut(s) 899
SsiI CCGC 2 cut(s) 567, 705
SspMI CTAG 2 cut(s) 362, 447
SstI GAGCTC 3 cut(s) 66, 664, 783
StuI AGGCCT 1 cut(s) 899
StyD4I CCNGG 2 cut(s) 626, 947
StyI CCWWGG 1 cut(s) 655
TaaI ACNGT 1 cut(s) 26
TaiI ACGT 1 cut(s) 859
TaqI TCGA 2 cut(s) 723, 925
TasI AATT 5 cut(s) 190, 288, 634, 685, 729
TatI WGTACW 1 cut(s) 848
TauI GCSGC 1 cut(s) 707
TfiI GAWTC 2 cut(s) 965, 995
Tru1I TTAA 2 cut(s) 267, 750
Tru9I TTAA 2 cut(s) 267, 750
TscAI CASTG 3 cut(s) 813, 1007, 1050
TseI GCWGC 8 cut(s) 5, 8, 30, 33, 346, 356, 578, 599
TspDTI ATGAA 6 cut(s) 104, 246, 281, 452, 689, 894
TspRI CASTG 3 cut(s) 813, 1007, 1050
XapI RAATTY 1 cut(s) 288
XspI CTAG 2 cut(s) 362, 447
ZrmI AGTACT 1 cut(s) 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.