Rh2CG255800

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013978
Physical Location & Seq
Reverse (-)
27260684 .. 27262674
1991 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG255800.1

Sequence Viewer

Length: 1050 bp
ATGGCAGCAGCTGTAGATATTTACAGTAGCAGCAGCTCAATGTCACCAGATTTATCAGAGGAGCTTATGAGAGCACTTATGCCTTGTATGAACAGTGCTTCTTCAACCTCTTCTATTTCTCCACCAACATCTCCTTCCACTTCTTATTATTCTTCTTCTTCCTACACTCCATTTTACTCTTCTTATCCCAATTTGTACTCTGACTTTTGCTCAAACACCCAAATGTTCCCACAAGTGGGTTTTGAGCAAACAGGTTCATTGGGGCTTAACCAACTCACCCCATCTCAAATTCGTCAAATCGAAACCCAAATGATACTCCAACAACAACAGAAGCAGCAAATTGCAGCTCTAGCTCCACTACCAAACCAATATCACCACCAACACTCTCACACCCTCAACTTCCTTGGCCCAAAAGCAATCCCAATGAAGCAATCTGGTACTCCCAAGCCCACAAAGCTCTACAGGGGAGTGAGGCAGAGGCATTGGGGAAAATGGGTTGCTGAGATTAGACTCCCCAAGAACCGAACTCGCCTCTGGCTTGGCACATTCGAAACAGCCGAAGAAGCAGCTTTAGCTTATGATAAAGCTGCTTATAAGCTCAGGGGAGACTTTGCCAGGCTCAATTTCCCTCATCTTAAGCATCAAGGAGCTCATATCACTGGAGATTTTGGCAATTACAAGCCTCTTCCTTCCGCAGTTGACGCCAAGCTCCAAGCAATTTGCGAGAGCTTGGCTGTTAATTCGCCGAAACAGGGCAAAACAGAGGAGCTCTGTTCGGAAGCAGAGACAAAGCCAGTGATTTCAGCTCCAAAGATGGTCTTTGATGATTCATCGAGTACAGATTTGAAAAGAGAATGGGACTCTCCTAAATTGGAGGCCATTTCATGGTCATCTTCACCCTCTCGATCCTGCGATGAGTCCTCAGCCGGGTCATCTTCACCGGAATCTGACATTACATTCTTGGATTTCTCAGATTCTCAGTGGGATGAGAATGATACTTTCGGATTGGAGAAGTACCCTTCAGTGGAGATTGATTGGTCTGCTATTTAA

Protein Analysis

349

Amino Acids

38.75

Weight (kDa)

5.66

Isoelectric Point (pI)

62.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 153 - 202 3.1e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22200 AT4G39780
fragaria_vesca FvH4_1g21210
malus_domestica MD15G1326800.v1.1
prunus_persica Prupe.6G182200_v2.0.a1
pyrus_communis pycom01g05500 pycom395g00070
rosa_chinensis RchiOBHm_Chr2g0115041
rosa_laevigata RLG00000018150
rosa_multiflora Rmu_sc0000784.1_g000017
rosa_roxburghii Rroxscaffold_2G00130510
rosa_rugosa Rorug02G0192600
rosa_samantha Rh2AG251200 Rh2BG260700 Rh2CG255800 Rh2DG259200
rosa_wichuraiana Rw2G019610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 594
AccB7I CCANNNNNTGG 1 cut(s) 885
AciI CCGC 1 cut(s) 693
AclWI GGATC 1 cut(s) 900
AcsI RAATTY 1 cut(s) 288
AcuI CTGAAG 1 cut(s) 1005
AcyI GRCGYC 1 cut(s) 702
AfaI GTAC 4 cut(s) 197, 439, 838, 1016
AfiI CCNNNNNNNGG 6 cut(s) 235, 236, 752, 885, 927, 1024
AflII CTTAAG 1 cut(s) 635
AgsI TTSAA 2 cut(s) 105, 847
AjnI CCWGG 1 cut(s) 614
AjuI GAANNNNNNNTTGG 2 cut(s) 118, 150
Alw21I GWGCWC 3 cut(s) 76, 652, 771
Alw26I GTCTC 2 cut(s) 600, 779
AlwI GGATC 1 cut(s) 900
AlwNI CAGNNNCTG 1 cut(s) 11
AoxI GGCC 2 cut(s) 406, 876
ApeKI GCWGC 8 cut(s) 5, 8, 30, 33, 334, 344, 566, 587
ApoI RAATTY 1 cut(s) 288
AspS9I GGNCC 1 cut(s) 407
AsuC2I CCSGG 1 cut(s) 928
AsuHPI GGTGA 5 cut(s) 36, 268, 365, 888, 930
AsuII TTCGAA 1 cut(s) 549
BanII GRGCYC 2 cut(s) 652, 771
Bbv12I GWGCWC 3 cut(s) 76, 652, 771
BbvCI CCTCAGC 1 cut(s) 922
BbvI GCAGC 8 cut(s) 17, 20, 42, 45, 346, 356, 574, 578
BccI CCATC 2 cut(s) 289, 808
BciT130I CCWGG 1 cut(s) 616
BcnI CCSGG 1 cut(s) 928
BcoDI GTCTC 2 cut(s) 600, 779
BfaI CTAG 1 cut(s) 350
BfmI CTRYAG 2 cut(s) 12, 460
BfrI CTTAAG 1 cut(s) 635
BisI GCNGC 8 cut(s) 6, 9, 31, 34, 335, 345, 567, 588
BlsI GCNGC 8 cut(s) 7, 10, 32, 35, 336, 346, 568, 589
Bme1390I CCNGG 2 cut(s) 616, 928
BmgT120I GGNCC 1 cut(s) 407
BmrFI CCNGG 2 cut(s) 616, 928
BmsI GCATC 1 cut(s) 649
BpmI CTGGAG 1 cut(s) 681
Bpu10I CCTNAGC 2 cut(s) 599, 922
Bpu14I TTCGAA 1 cut(s) 549
BpuMI CCSGG 1 cut(s) 928
BsaHI GRCGYC 1 cut(s) 702
BsaJI CCNNGG 1 cut(s) 403
BsaWI WCCGGW 1 cut(s) 940
Bsc4I CCNNNNNNNGG 6 cut(s) 235, 236, 752, 885, 927, 1024
Bse1I ACTGG 2 cut(s) 664, 794
BseBI CCWGG 1 cut(s) 616
BseDI CCNNGG 1 cut(s) 403
BseGI GGATG 1 cut(s) 991
BseLI CCNNNNNNNGG 6 cut(s) 235, 236, 752, 885, 927, 1024
BseMII CTCAG 5 cut(s) 492, 613, 936, 984, 992
BseNI ACTGG 2 cut(s) 664, 794
BseRI GAGGAG 2 cut(s) 74, 779
BseXI GCAGC 8 cut(s) 17, 20, 42, 45, 346, 356, 574, 578
BshFI GGCC 2 cut(s) 408, 878
BsiHKAI GWGCWC 3 cut(s) 76, 652, 771
BsiSI CCGG 2 cut(s) 927, 941
BslFI GGGAC 1 cut(s) 872
BslI CCNNNNNNNGG 6 cut(s) 235, 236, 752, 885, 927, 1024
BsmAI GTCTC 2 cut(s) 600, 779
BsmFI GGGAC 1 cut(s) 872
BsnI GGCC 2 cut(s) 408, 878
Bsp119I TTCGAA 1 cut(s) 549
Bsp1286I GDGCHC 3 cut(s) 76, 652, 771
Bsp143I GATC 1 cut(s) 905
BspACI CCGC 1 cut(s) 693
BspANI GGCC 2 cut(s) 408, 878
BspCNI CTCAG 5 cut(s) 493, 612, 935, 983, 991
BspPI GGATC 1 cut(s) 900
BspT104I TTCGAA 1 cut(s) 549
BspTI CTTAAG 1 cut(s) 635
BsrI ACTGG 2 cut(s) 664, 794
BssECI CCNNGG 1 cut(s) 403
BssMI GATC 1 cut(s) 905
BssNI GRCGYC 1 cut(s) 702
BssT1I CCWWGG 1 cut(s) 403
Bst2UI CCWGG 1 cut(s) 616
Bst4CI ACNGT 2 cut(s) 26, 95
Bst6I CTCTTC 3 cut(s) 115, 184, 690
BstACI GRCGYC 1 cut(s) 702
BstAFI CTTAAG 1 cut(s) 635
BstBI TTCGAA 1 cut(s) 549
BstDEI CTNAG 5 cut(s) 501, 599, 922, 970, 978
BstF5I GGATG 1 cut(s) 991
BstKTI GATC 1 cut(s) 908
BstMAI GTCTC 2 cut(s) 600, 779
BstMBI GATC 1 cut(s) 905
BstMWI GCNNNNNNNGC 5 cut(s) 350, 454, 563, 572, 701
BstNI CCWGG 1 cut(s) 616
BstSCI CCNGG 2 cut(s) 614, 926
BstSFI CTRYAG 2 cut(s) 12, 460
BstV1I GCAGC 8 cut(s) 17, 20, 42, 45, 346, 356, 574, 578
BsuRI GGCC 2 cut(s) 408, 878
BtgZI GCGATG 1 cut(s) 927
BtsCI GGATG 1 cut(s) 991
BtsIMutI CAGTG 5 cut(s) 100, 657, 801, 986, 1029
CaiI CAGNNNCTG 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 407
CseI GACGC 1 cut(s) 710
Csp6I GTAC 4 cut(s) 196, 438, 837, 1015
CviAII CATG 1 cut(s) 885
CviQI GTAC 4 cut(s) 196, 438, 837, 1015
DdeI CTNAG 5 cut(s) 501, 599, 922, 970, 978
DpnI GATC 1 cut(s) 907
DpnII GATC 1 cut(s) 905
Eam1104I CTCTTC 3 cut(s) 115, 184, 690
EarI CTCTTC 3 cut(s) 115, 184, 690
Ecl136II GAGCTC 2 cut(s) 650, 769
Eco130I CCWWGG 1 cut(s) 403
Eco24I GRGCYC 2 cut(s) 652, 771
Eco53kI GAGCTC 2 cut(s) 650, 769
Eco57I CTGAAG 1 cut(s) 1005
EcoICRI GAGCTC 2 cut(s) 650, 769
EcoRII CCWGG 1 cut(s) 614
EcoT14I CCWWGG 1 cut(s) 403
EcoT38I GRGCYC 2 cut(s) 652, 771
ErhI CCWWGG 1 cut(s) 403
FaeI CATG 1 cut(s) 888
FaiI YATR 7 cut(s) 68, 80, 89, 579, 594, 654, 886
FalI AAGNNNNNCTT 2 cut(s) 803, 835
FaqI GGGAC 1 cut(s) 872
FatI CATG 1 cut(s) 884
Fnu4HI GCNGC 8 cut(s) 6, 9, 31, 34, 335, 345, 567, 588
FokI GGATG 1 cut(s) 998
FriOI GRGCYC 2 cut(s) 652, 771
Fsp4HI GCNGC 8 cut(s) 6, 9, 31, 34, 335, 345, 567, 588
FspBI CTAG 1 cut(s) 350
GluI GCNGC 8 cut(s) 6, 9, 31, 34, 335, 345, 567, 588
GsuI CTGGAG 1 cut(s) 681
HaeIII GGCC 2 cut(s) 408, 878
HapII CCGG 2 cut(s) 927, 941
HgaI GACGC 1 cut(s) 710
Hin1I GRCGYC 1 cut(s) 702
Hin1II CATG 1 cut(s) 888
HincII GTYRAC 1 cut(s) 700
HindII GTYRAC 1 cut(s) 700
HinfI GANTC 6 cut(s) 510, 827, 860, 917, 944, 974
HpaII CCGG 2 cut(s) 927, 941
HphI GGTGA 5 cut(s) 36, 268, 365, 888, 930
Hpy166II GTNNAC 1 cut(s) 700
Hpy188I TCNGA 6 cut(s) 58, 202, 778, 949, 973, 1004
Hpy188III TCNNGA 1 cut(s) 903
Hpy8I GTNNAC 1 cut(s) 700
HpyAV CCTTC 3 cut(s) 144, 699, 1029
HpyCH4III ACNGT 2 cut(s) 26, 95
HpyCH4V TGCA 1 cut(s) 344
HpyF10VI GCNNNNNNNGC 5 cut(s) 350, 454, 563, 572, 701
HpyF3I CTNAG 5 cut(s) 501, 599, 922, 970, 978
Hsp92I GRCGYC 1 cut(s) 702
Hsp92II CATG 1 cut(s) 888
Kzo9I GATC 1 cut(s) 905
LmnI GCTCC 6 cut(s) 61, 358, 647, 714, 766, 811
Lsp1109I GCAGC 8 cut(s) 17, 20, 42, 45, 346, 356, 574, 578
LweI GCATC 1 cut(s) 649
MaeI CTAG 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 42
MalI GATC 1 cut(s) 907
MboI GATC 1 cut(s) 905
MhlI GDGCHC 3 cut(s) 76, 652, 771
MluCI AATT 8 cut(s) 190, 288, 339, 622, 673, 717, 739, 869
MlyI GAGTC 3 cut(s) 504, 854, 926
MmeI TCCRAC 1 cut(s) 343
MseI TTAA 4 cut(s) 267, 636, 738, 1048
MslI CAYNNNNRTG 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 11
MspCI CTTAAG 1 cut(s) 635
MspI CCGG 2 cut(s) 927, 941
MspR9I CCNGG 2 cut(s) 616, 928
MvaI CCWGG 1 cut(s) 616
MwoI GCNNNNNNNGC 5 cut(s) 350, 454, 563, 572, 701
NciI CCSGG 1 cut(s) 928
NdeII GATC 1 cut(s) 905
NlaIII CATG 1 cut(s) 888
NmuCI GTSAC 1 cut(s) 42
NspV TTCGAA 1 cut(s) 549
PcsI WCGNNNNNNNCGW 1 cut(s) 555
PfeI GAWTC 3 cut(s) 827, 944, 974
PflMI CCANNNNNTGG 1 cut(s) 885
PkrI GCNGC 8 cut(s) 7, 10, 32, 35, 336, 346, 568, 589
PleI GAGTC 3 cut(s) 504, 854, 925
PpsI GAGTC 3 cut(s) 504, 854, 925
PsiI TTATAA 1 cut(s) 594
Psp124BI GAGCTC 2 cut(s) 652, 771
Psp6I CCWGG 1 cut(s) 614
PspGI CCWGG 1 cut(s) 614
PspPI GGNCC 1 cut(s) 407
PstNI CAGNNNCTG 1 cut(s) 11
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 4 cut(s) 197, 439, 838, 1016
RsaNI GTAC 4 cut(s) 196, 438, 837, 1015
RseI CAYNNNNRTG 1 cut(s) 221
SacI GAGCTC 2 cut(s) 652, 771
SaqAI TTAA 4 cut(s) 267, 636, 738, 1048
SatI GCNGC 8 cut(s) 6, 9, 31, 34, 335, 345, 567, 588
Sau3AI GATC 1 cut(s) 905
Sau96I GGNCC 1 cut(s) 407
SchI GAGTC 3 cut(s) 504, 854, 926
ScrFI CCNGG 2 cut(s) 616, 928
SduI GDGCHC 3 cut(s) 76, 652, 771
SfaNI GCATC 1 cut(s) 649
SfcI CTRYAG 2 cut(s) 12, 460
SfuI TTCGAA 1 cut(s) 549
SmiMI CAYNNNNRTG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 635
SmoI CTYRAG 1 cut(s) 635
Sse9I AATT 8 cut(s) 190, 288, 339, 622, 673, 717, 739, 869
SsiI CCGC 1 cut(s) 693
SspMI CTAG 1 cut(s) 350
SstI GAGCTC 2 cut(s) 652, 771
StyD4I CCNGG 2 cut(s) 614, 926
StyI CCWWGG 1 cut(s) 403
TaaI ACNGT 2 cut(s) 26, 95
TaqI TCGA 4 cut(s) 300, 549, 833, 904
TasI AATT 8 cut(s) 190, 288, 339, 622, 673, 717, 739, 869
TatI WGTACW 2 cut(s) 195, 836
TfiI GAWTC 3 cut(s) 827, 944, 974
Tru1I TTAA 4 cut(s) 267, 636, 738, 1048
Tru9I TTAA 4 cut(s) 267, 636, 738, 1048
TscAI CASTG 5 cut(s) 100, 664, 801, 986, 1029
TseFI GTSAC 1 cut(s) 42
TseI GCWGC 8 cut(s) 5, 8, 30, 33, 334, 344, 566, 587
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 5 cut(s) 104, 246, 440, 819, 873
TspRI CASTG 5 cut(s) 100, 664, 801, 986, 1029
Van91I CCANNNNNTGG 1 cut(s) 885
Vha464I CTTAAG 1 cut(s) 635
XapI RAATTY 1 cut(s) 288
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.