Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000784.1

Orthogroup ID

OG0013978

Physical Location & Seq

Genomic Coordinates Reverse (-)

80305 .. 81357

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000784.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atggcagcagctatagatatttacagtagaagcagctcaatgtcaccagatttatcggaggagcttatgagagcacttatgccttatatgaacagtgcttcttcaacctcttctatttctccaccaacatctccttccacttcttattattcttcttcttcctacactccattttactcttcttcttatcccaatttgtaccctgacttttgctcaaacacccaaatgttcccacaagtggattttgagcaaacaggttcattggggcttaaccaactcaccccatctcaaattcgtcaaatccaaacccaaatgatactccaacaacaacagaagcagcaaattgcagctctagctccactaccaaaccaatatcaccaccaacactctcacaccctcaacttccttggcccaaaagcaatcccaatgaagcaatctggtactcccaagcccacaaagctctacaggggagtgaggcagagacattggggaaaatgggttgctgagattagactccccaagaaccgaactcgcctctggcttggcacattcgaaacagccgaagaagcagctttagcttatgataaagctgcttataagctcaggggagactttgccaggctcaatttccctcatcttaagcatcaaggagctcatatcactggagattttggcaattacaagcctcttccttccgcagttgacgccaagctccaagcaatttgcgagagcttggctgttaattcgcccaaacagggaaaaacagaggagctctgctctgaaacagagacaaagccaatgatttcagctccaaagatggtctttgatgattcattgagtacagatttgaaaagagaatgggactctcctaaattggaggccatttcatggtcatcttcaccctctcggtcctgcgatgagtcctcagccgagtcatcttcaccggaatctgacattacattcttggatttctcagattctcagtgggatgagaatgatactttcggattggagaagtacccttcagtggagattgattggtctgctatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

350

Amino Acids

39.21

Weight (kDa)

5.66

Isoelectric Point (pI)

62.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22200 AT4G39780
fragaria_vesca	FvH4_1g21210
malus_domestica	MD15G1326800.v1.1
prunus_persica	Prupe.6G182200_v2.0.a1
pyrus_communis	pycom01g05500 pycom395g00070
rosa_chinensis	RchiOBHm_Chr2g0115041
rosa_laevigata	RLG00000018150
rosa_multiflora	Rmu_sc0000784.1_g000017
rosa_roxburghii	Rroxscaffold_2G00130510
rosa_rugosa	Rorug02G0192600
rosa_samantha	Rh2AG251200 Rh2BG260700 Rh2CG255800 Rh2DG259200
rosa_wichuraiana	Rw2G019610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
AccB7I	CCANNNNNTGG	1 cut(s)	888
AciI	CCGC	1 cut(s)	696
AcsI	RAATTY	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	1008
AcyI	GRCGYC	1 cut(s)	705
AfaI	GTAC	4 cut(s)	200, 442, 841, 1019
AfiI	CCNNNNNNNGG	4 cut(s)	238, 755, 888, 1027
AflII	CTTAAG	1 cut(s)	638
AgsI	TTSAA	2 cut(s)	105, 850
AjnI	CCWGG	1 cut(s)	617
AjuI	GAANNNNNNNTTGG	2 cut(s)	118, 150
Alw21I	GWGCWC	3 cut(s)	76, 655, 774
Alw26I	GTCTC	3 cut(s)	475, 603, 782
AoxI	GGCC	2 cut(s)	409, 879
ApeKI	GCWGC	7 cut(s)	5, 8, 33, 337, 347, 569, 590
ApoI	RAATTY	1 cut(s)	291
AspS9I	GGNCC	2 cut(s)	410, 909
AsuHPI	GGTGA	5 cut(s)	36, 271, 368, 891, 933
AsuII	TTCGAA	1 cut(s)	552
AvaII	GGWCC	1 cut(s)	909
BanII	GRGCYC	2 cut(s)	655, 774
Bbv12I	GWGCWC	3 cut(s)	76, 655, 774
BbvCI	CCTCAGC	1 cut(s)	925
BbvI	GCAGC	7 cut(s)	17, 20, 45, 349, 359, 577, 581
BccI	CCATC	2 cut(s)	292, 811
BciT130I	CCWGG	1 cut(s)	619
BcoDI	GTCTC	3 cut(s)	475, 603, 782
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	2 cut(s)	12, 463
BfrI	CTTAAG	1 cut(s)	638
BisI	GCNGC	7 cut(s)	6, 9, 34, 338, 348, 570, 591
BlsI	GCNGC	7 cut(s)	7, 10, 35, 339, 349, 571, 592
Bme1390I	CCNGG	1 cut(s)	619
Bme18I	GGWCC	1 cut(s)	909
BmgT120I	GGNCC	2 cut(s)	410, 909
BmrFI	CCNGG	1 cut(s)	619
BmsI	GCATC	1 cut(s)	652
BplI	GAGNNNNNCTC	2 cut(s)	761, 793
BpmI	CTGGAG	1 cut(s)	684
Bpu10I	CCTNAGC	2 cut(s)	602, 925
Bpu14I	TTCGAA	1 cut(s)	552
BsaHI	GRCGYC	1 cut(s)	705
BsaJI	CCNNGG	1 cut(s)	406
BsaWI	WCCGGW	1 cut(s)	943
Bsc4I	CCNNNNNNNGG	4 cut(s)	238, 755, 888, 1027
Bse1I	ACTGG	1 cut(s)	667
BseBI	CCWGG	1 cut(s)	619
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	1 cut(s)	994
BseLI	CCNNNNNNNGG	4 cut(s)	238, 755, 888, 1027
BseMII	CTCAG	5 cut(s)	495, 616, 939, 987, 995
BseNI	ACTGG	1 cut(s)	667
BseRI	GAGGAG	2 cut(s)	74, 782
BseXI	GCAGC	7 cut(s)	17, 20, 45, 349, 359, 577, 581
BshFI	GGCC	2 cut(s)	411, 881
BsiHKAI	GWGCWC	3 cut(s)	76, 655, 774
BsiSI	CCGG	1 cut(s)	944
BslFI	GGGAC	1 cut(s)	875
BslI	CCNNNNNNNGG	4 cut(s)	238, 755, 888, 1027
BsmAI	GTCTC	3 cut(s)	475, 603, 782
BsmFI	GGGAC	1 cut(s)	875
BsnI	GGCC	2 cut(s)	411, 881
Bsp119I	TTCGAA	1 cut(s)	552
Bsp1286I	GDGCHC	3 cut(s)	76, 655, 774
BspACI	CCGC	1 cut(s)	696
BspANI	GGCC	2 cut(s)	411, 881
BspCNI	CTCAG	5 cut(s)	496, 615, 938, 986, 994
BspT104I	TTCGAA	1 cut(s)	552
BspTI	CTTAAG	1 cut(s)	638
BsrI	ACTGG	1 cut(s)	667
BssECI	CCNNGG	1 cut(s)	406
BssNI	GRCGYC	1 cut(s)	705
BssT1I	CCWWGG	1 cut(s)	406
Bst2UI	CCWGG	1 cut(s)	619
Bst4CI	ACNGT	2 cut(s)	26, 95
Bst6I	CTCTTC	3 cut(s)	115, 184, 693
BstACI	GRCGYC	1 cut(s)	705
BstAFI	CTTAAG	1 cut(s)	638
BstBI	TTCGAA	1 cut(s)	552
BstDEI	CTNAG	5 cut(s)	504, 602, 925, 973, 981
BstF5I	GGATG	1 cut(s)	994
BstMAI	GTCTC	3 cut(s)	475, 603, 782
BstMWI	GCNNNNNNNGC	5 cut(s)	353, 457, 566, 575, 704
BstNI	CCWGG	1 cut(s)	619
BstSCI	CCNGG	1 cut(s)	617
BstSFI	CTRYAG	2 cut(s)	12, 463
BstV1I	GCAGC	7 cut(s)	17, 20, 45, 349, 359, 577, 581
BsuRI	GGCC	2 cut(s)	411, 881
BtgZI	GCGATG	1 cut(s)	930
BtsCI	GGATG	1 cut(s)	994
BtsIMutI	CAGTG	4 cut(s)	100, 660, 989, 1032
Cfr13I	GGNCC	2 cut(s)	410, 909
CseI	GACGC	1 cut(s)	713
Csp6I	GTAC	4 cut(s)	199, 441, 840, 1018
CviAII	CATG	1 cut(s)	888
CviQI	GTAC	4 cut(s)	199, 441, 840, 1018
DdeI	CTNAG	5 cut(s)	504, 602, 925, 973, 981
Eam1104I	CTCTTC	3 cut(s)	115, 184, 693
EarI	CTCTTC	3 cut(s)	115, 184, 693
Ecl136II	GAGCTC	2 cut(s)	653, 772
Eco130I	CCWWGG	1 cut(s)	406
Eco24I	GRGCYC	2 cut(s)	655, 774
Eco47I	GGWCC	1 cut(s)	909
Eco53kI	GAGCTC	2 cut(s)	653, 772
Eco57I	CTGAAG	1 cut(s)	1008
EcoICRI	GAGCTC	2 cut(s)	653, 772
EcoRII	CCWGG	1 cut(s)	617
EcoT14I	CCWWGG	1 cut(s)	406
EcoT38I	GRGCYC	2 cut(s)	655, 774
ErhI	CCWWGG	1 cut(s)	406
FaeI	CATG	1 cut(s)	891
FaiI	YATR	9 cut(s)	14, 68, 80, 87, 89, 582, 597, 657, 889
FalI	AAGNNNNNCTT	2 cut(s)	806, 838
FaqI	GGGAC	1 cut(s)	875
FatI	CATG	1 cut(s)	887
Fnu4HI	GCNGC	7 cut(s)	6, 9, 34, 338, 348, 570, 591
FokI	GGATG	1 cut(s)	1001
FriOI	GRGCYC	2 cut(s)	655, 774
Fsp4HI	GCNGC	7 cut(s)	6, 9, 34, 338, 348, 570, 591
FspBI	CTAG	1 cut(s)	353
GluI	GCNGC	7 cut(s)	6, 9, 34, 338, 348, 570, 591
GsuI	CTGGAG	1 cut(s)	684
HaeIII	GGCC	2 cut(s)	411, 881
HapII	CCGG	1 cut(s)	944
HgaI	GACGC	1 cut(s)	713
Hin1I	GRCGYC	1 cut(s)	705
Hin1II	CATG	1 cut(s)	891
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HinfI	GANTC	7 cut(s)	513, 830, 863, 920, 932, 947, 977
HpaII	CCGG	1 cut(s)	944
HphI	GGTGA	5 cut(s)	36, 271, 368, 891, 933
Hpy166II	GTNNAC	1 cut(s)	703
Hpy188I	TCNGA	5 cut(s)	58, 781, 952, 976, 1007
Hpy8I	GTNNAC	1 cut(s)	703
HpyAV	CCTTC	3 cut(s)	144, 702, 1032
HpyCH4III	ACNGT	2 cut(s)	26, 95
HpyCH4V	TGCA	1 cut(s)	347
HpyF10VI	GCNNNNNNNGC	5 cut(s)	353, 457, 566, 575, 704
HpyF3I	CTNAG	5 cut(s)	504, 602, 925, 973, 981
Hsp92I	GRCGYC	1 cut(s)	705
Hsp92II	CATG	1 cut(s)	891
LmnI	GCTCC	6 cut(s)	61, 361, 650, 717, 769, 814
Lsp1109I	GCAGC	7 cut(s)	17, 20, 45, 349, 359, 577, 581
LweI	GCATC	1 cut(s)	652
MaeI	CTAG	1 cut(s)	353
MaeIII	GTNAC	1 cut(s)	42
MhlI	GDGCHC	3 cut(s)	76, 655, 774
MluCI	AATT	8 cut(s)	193, 291, 342, 625, 676, 720, 742, 872
MlyI	GAGTC	4 cut(s)	507, 857, 929, 941
MmeI	TCCRAC	1 cut(s)	346
MseI	TTAA	4 cut(s)	270, 639, 741, 1051
MslI	CAYNNNNRTG	1 cut(s)	224
MspCI	CTTAAG	1 cut(s)	638
MspI	CCGG	1 cut(s)	944
MspR9I	CCNGG	1 cut(s)	619
MvaI	CCWGG	1 cut(s)	619
MwoI	GCNNNNNNNGC	5 cut(s)	353, 457, 566, 575, 704
NlaIII	CATG	1 cut(s)	891
NmeAIII	GCCGAG	1 cut(s)	955
NmuCI	GTSAC	1 cut(s)	42
NspV	TTCGAA	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	1 cut(s)	558
PfeI	GAWTC	3 cut(s)	830, 947, 977
PflMI	CCANNNNNTGG	1 cut(s)	888
PkrI	GCNGC	7 cut(s)	7, 10, 35, 339, 349, 571, 592
PleI	GAGTC	4 cut(s)	507, 857, 928, 940
PpsI	GAGTC	4 cut(s)	507, 857, 928, 940
PsiI	TTATAA	1 cut(s)	597
Psp124BI	GAGCTC	2 cut(s)	655, 774
Psp6I	CCWGG	1 cut(s)	617
PspGI	CCWGG	1 cut(s)	617
PspPI	GGNCC	2 cut(s)	410, 909
RsaI	GTAC	4 cut(s)	200, 442, 841, 1019
RsaNI	GTAC	4 cut(s)	199, 441, 840, 1018
RseI	CAYNNNNRTG	1 cut(s)	224
SacI	GAGCTC	2 cut(s)	655, 774
SaqAI	TTAA	4 cut(s)	270, 639, 741, 1051
SatI	GCNGC	7 cut(s)	6, 9, 34, 338, 348, 570, 591
Sau96I	GGNCC	2 cut(s)	410, 909
SchI	GAGTC	4 cut(s)	507, 857, 929, 941
ScrFI	CCNGG	1 cut(s)	619
SduI	GDGCHC	3 cut(s)	76, 655, 774
SfaNI	GCATC	1 cut(s)	652
SfcI	CTRYAG	2 cut(s)	12, 463
SfuI	TTCGAA	1 cut(s)	552
SinI	GGWCC	1 cut(s)	909
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
Sse9I	AATT	8 cut(s)	193, 291, 342, 625, 676, 720, 742, 872
SsiI	CCGC	1 cut(s)	696
SspMI	CTAG	1 cut(s)	353
SstI	GAGCTC	2 cut(s)	655, 774
StyD4I	CCNGG	1 cut(s)	617
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	2 cut(s)	26, 95
TaqI	TCGA	1 cut(s)	552
TaqII	GACCGA	1 cut(s)	897
TasI	AATT	8 cut(s)	193, 291, 342, 625, 676, 720, 742, 872
TatI	WGTACW	1 cut(s)	839
TfiI	GAWTC	3 cut(s)	830, 947, 977
Tru1I	TTAA	4 cut(s)	270, 639, 741, 1051
Tru9I	TTAA	4 cut(s)	270, 639, 741, 1051
TscAI	CASTG	4 cut(s)	100, 667, 989, 1032
TseFI	GTSAC	1 cut(s)	42
TseI	GCWGC	7 cut(s)	5, 8, 33, 337, 347, 569, 590
Tsp45I	GTSAC	1 cut(s)	42
TspDTI	ATGAA	5 cut(s)	104, 249, 443, 822, 876
TspRI	CASTG	4 cut(s)	100, 667, 989, 1032
Van91I	CCANNNNNTGG	1 cut(s)	888
Vha464I	CTTAAG	1 cut(s)	638
VpaK11BI	GGWCC	1 cut(s)	909
XapI	RAATTY	1 cut(s)	291
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.