Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003846

Physical Location & Seq

Genomic Coordinates Reverse (-)

9589435 .. 9590932

Gene Structure 1498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G22570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCGAATCATGAAACGATATTTGATCAGCTAAAGAAGCAGATTCCAGTAGATGAGGAAGAACCTCTGATTTTGAATCGAGACTCAAGCGTTGGTCTCGTCATCGTTGACGTTGTTAATGGCTTCTGCACAATTGGCTCCGGCAATATGGCTCCAACAAAGCATAATGAACAGATATCGAAGATGGTGGAGGAAAGTGCAAAGCTTGCTAGAGAGTTCTGTGATCGGAAATGGCCGGTTTTGGCGTTTATTGACTCTCATCATCCAGATATTCCGGAGAGACCTTATCCTCCTCATTGTATTATAGGAACTGAAGAATCAGAACTTGTTCCTGCTCTGAAATGGCTTGAAAGTGAGGATTGTGCCACTCTTAGACGAAAGGATTGTATTAATGGGTTTGTGGGTTCGATGGAGAGTGATGGTTCTAATGTTTTTGTGGATTGGGTTAAGGAAAAACAGATCAAAGTTATTGTCGTTGTAGGTATCTGTACAGACATATGTGTGTTTGATTTTGTGGCTACTGCACTTTCTGCCCGAAACCACGGTGTTCTTTCTCCTGTAGAAGATGTGGTAGTGTACTCCCGTGGCTGTGCTACTTTTGACCTTCCTCTTCATGTTGCGAAAGACATCAAAGGCGCTCAGGCTCATCCTCAGGAGTTGATGCACCATGTAGGTCTATATATGGCTAAAGGAAGAGGAGCTCAGGTAGTCTCTAAAATTTCTTTTGAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006766 GO:0006767 GO:0006769 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008936 GO:0009056 GO:0009058 GO:0009108 GO:0009112 GO:0009117 GO:0009165 GO:0009719 GO:0009725 GO:0009737 GO:0009820 GO:0009987 GO:0010033 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019362 GO:0019363 GO:0019365 GO:0019438 GO:0019637 GO:0019860 GO:0033993 GO:0034641 GO:0034654 GO:0042221 GO:0042737 GO:0043094 GO:0043173 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044424 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072527 GO:0072529 GO:0090407 GO:0097305 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Isochorismatase

Protein Analysis

244

Amino Acids

27.02

Weight (kDa)

5.35

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Isochorismatase	PF00857	33 - 157	3e-14	Isochorismatase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22570 AT2G22570
fragaria_vesca	FvH4_1g19620 FvH4_1g19620
malus_domestica	MD01G1039800.v1.1 MD15G1312000.v1.1
prunus_persica	Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1
pyrus_communis	pycom01g06760 pycom15g27560
rosa_chinensis	RchiOBHm_Chr2g0111171 RchiOBHm_Chr6g0270861
rosa_laevigata	RLG00000013764 RLG00000017870
rosa_multiflora	Rmu_sc0010417.1_g000002 Rmu_sc0030113.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132660 Rroxscaffold_7G00197570
rosa_rugosa	Rorug02G0171200 Rorug06G0056900 Rorug06G0056900
rosa_samantha	Rh2AG224200 Rh2BG235900 Rh2CG227300 Rh2DG231900 Rh6AG176300 Rh6BG179700 Rh6CG175700 Rh6DG168000
rosa_wichuraiana	Rw2G017310 Rw6G015020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	274
AcoI	YGGCCR	1 cut(s)	233
AcsI	RAATTY	1 cut(s)	717
AcuI	CTGAAG	1 cut(s)	333
AfaI	GTAC	2 cut(s)	490, 578
AgsI	TTSAA	2 cut(s)	76, 350
AluBI	AGCT	3 cut(s)	31, 205, 701
AluI	AGCT	3 cut(s)	31, 205, 701
Alw21I	GWGCWC	1 cut(s)	703
Alw26I	GTCTC	5 cut(s)	75, 101, 274, 715, 722
Aor13HI	TCCGGA	1 cut(s)	274
AoxI	GGCC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	717
ArsI	GACNNNNNNTTYG	2 cut(s)	456, 488
AseI	ATTAAT	1 cut(s)	390
Asp700I	GAANNNNTTC	1 cut(s)	327
AspLEI	GCGC	1 cut(s)	638
AxyI	CCTNAGG	1 cut(s)	651
BanII	GRGCYC	1 cut(s)	703
Bbv12I	GWGCWC	1 cut(s)	703
BccI	CCATC	3 cut(s)	178, 403, 413
BclI	TGATCA	1 cut(s)	25
BcoDI	GTCTC	5 cut(s)	75, 101, 274, 715, 722
BfaI	CTAG	1 cut(s)	210
BfmI	CTRYAG	1 cut(s)	558
BfoI	RGCGCY	1 cut(s)	639
BmiI	GGNNCC	2 cut(s)	139, 153
BmsI	GCATC	1 cut(s)	651
Bpu10I	CCTNAGC	2 cut(s)	639, 702
BpuEI	CTTGAG	1 cut(s)	70
BsaI	GGTCTC	2 cut(s)	101, 274
BsaJI	CCNNGG	2 cut(s)	541, 583
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	690, 720
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	47
Bse21I	CCTNAGG	1 cut(s)	651
BseAI	TCCGGA	1 cut(s)	274
BseDI	CCNNGG	2 cut(s)	541, 583
BseGI	GGATG	2 cut(s)	262, 646
BseMII	CTCAG	3 cut(s)	653, 665, 716
BseNI	ACTGG	1 cut(s)	47
BseRI	GAGGAG	2 cut(s)	282, 711
BsgI	GTGCAG	2 cut(s)	112, 507
BshFI	GGCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	703
BsiSI	CCGG	3 cut(s)	141, 236, 275
BsmAI	GTCTC	5 cut(s)	75, 101, 274, 715, 722
BsnI	GGCC	1 cut(s)	235
Bso31I	GGTCTC	2 cut(s)	101, 274
Bsp1286I	GDGCHC	1 cut(s)	703
Bsp13I	TCCGGA	1 cut(s)	274
Bsp1407I	TGTACA	1 cut(s)	488
Bsp143I	GATC	3 cut(s)	25, 223, 459
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	3 cut(s)	652, 664, 715
BspEI	TCCGGA	1 cut(s)	274
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	139, 153
BspTNI	GGTCTC	2 cut(s)	101, 274
BsrFI	RCCGGY	1 cut(s)	235
BsrGI	TGTACA	1 cut(s)	488
BsrI	ACTGG	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	2 cut(s)	541, 583
BssMI	GATC	3 cut(s)	25, 223, 459
Bst4CI	ACNGT	1 cut(s)	545
Bst6I	CTCTTC	2 cut(s)	615, 688
BstAPI	GCANNNNNTGC	2 cut(s)	206, 530
BstAUI	TGTACA	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	4 cut(s)	371, 639, 651, 702
BstDSI	CCRYGG	2 cut(s)	541, 583
BstF5I	GGATG	2 cut(s)	262, 646
BstH2I	RGCGCY	1 cut(s)	639
BstHHI	GCGC	1 cut(s)	638
BstKTI	GATC	3 cut(s)	28, 226, 462
BstMAI	GTCTC	5 cut(s)	75, 101, 274, 715, 722
BstMBI	GATC	3 cut(s)	25, 223, 459
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 135, 206, 530
BstSFI	CTRYAG	1 cut(s)	558
Bsu36I	CCTNAGG	1 cut(s)	651
BsuRI	GGCC	1 cut(s)	235
BtgI	CCRYGG	2 cut(s)	541, 583
BtsCI	GGATG	2 cut(s)	262, 646
Cac8I	GCNNGC	1 cut(s)	207
CciI	TCATGA	1 cut(s)	10
CfoI	GCGC	1 cut(s)	638
Cfr10I	RCCGGY	1 cut(s)	235
Csp6I	GTAC	2 cut(s)	489, 577
CviAII	CATG	3 cut(s)	11, 614, 668
CviQI	GTAC	2 cut(s)	489, 577
DdeI	CTNAG	4 cut(s)	371, 639, 651, 702
DpnI	GATC	3 cut(s)	27, 225, 461
DpnII	GATC	3 cut(s)	25, 223, 459
EaeI	YGGCCR	1 cut(s)	233
Eam1104I	CTCTTC	2 cut(s)	615, 688
EarI	CTCTTC	2 cut(s)	615, 688
Ecl136II	GAGCTC	1 cut(s)	701
Eco24I	GRGCYC	1 cut(s)	703
Eco31I	GGTCTC	2 cut(s)	101, 274
Eco32I	GATATC	1 cut(s)	177
Eco53kI	GAGCTC	1 cut(s)	701
Eco57I	CTGAAG	1 cut(s)	333
Eco81I	CCTNAGG	1 cut(s)	651
EcoICRI	GAGCTC	1 cut(s)	701
EcoRV	GATATC	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	703
FaeI	CATG	3 cut(s)	14, 617, 671
FatI	CATG	3 cut(s)	10, 613, 667
FauNDI	CATATG	1 cut(s)	497
FbaI	TGATCA	1 cut(s)	25
FokI	GGATG	2 cut(s)	249, 633
FriOI	GRGCYC	1 cut(s)	703
FspBI	CTAG	1 cut(s)	210
GlaI	GCGC	1 cut(s)	637
HaeII	RGCGCY	1 cut(s)	639
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	3 cut(s)	141, 236, 275
HhaI	GCGC	1 cut(s)	638
Hin1II	CATG	3 cut(s)	14, 617, 671
Hin6I	GCGC	1 cut(s)	636
HinP1I	GCGC	1 cut(s)	636
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	6 cut(s)	7, 43, 76, 83, 254, 317
HpaII	CCGG	3 cut(s)	141, 236, 275
Hpy166II	GTNNAC	2 cut(s)	109, 577
Hpy188I	TCNGA	4 cut(s)	69, 228, 322, 339
Hpy188III	TCNNGA	5 cut(s)	11, 80, 266, 275, 653
Hpy8I	GTNNAC	2 cut(s)	109, 577
HpyAV	CCTTC	1 cut(s)	614
HpyCH4III	ACNGT	1 cut(s)	545
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	4 cut(s)	129, 200, 524, 664
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 135, 206, 530
HpyF3I	CTNAG	4 cut(s)	371, 639, 651, 702
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	3 cut(s)	14, 617, 671
HspAI	GCGC	1 cut(s)	636
Kpn2I	TCCGGA	1 cut(s)	274
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	25, 223, 459
LmnI	GCTCC	3 cut(s)	143, 157, 698
LweI	GCATC	1 cut(s)	651
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	111
MalI	GATC	3 cut(s)	27, 225, 461
MboI	GATC	3 cut(s)	25, 223, 459
MboII	GAAGA	6 cut(s)	71, 193, 326, 575, 602, 705
MfeI	CAATTG	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	703
MluCI	AATT	2 cut(s)	132, 717
MlyI	GAGTC	2 cut(s)	77, 248
MmeI	TCCRAC	1 cut(s)	179
MnlI	CCTC	9 cut(s)	49, 75, 184, 300, 303, 349, 618, 660, 689
MroI	TCCGGA	1 cut(s)	274
MroXI	GAANNNNTTC	1 cut(s)	327
MseI	TTAA	3 cut(s)	117, 390, 447
MslI	CAYNNNNRTG	1 cut(s)	500
MspI	CCGG	3 cut(s)	141, 236, 275
MunI	CAATTG	1 cut(s)	132
MwoI	GCNNNNNNNGC	4 cut(s)	37, 135, 206, 530
NdeI	CATATG	1 cut(s)	497
NdeII	GATC	3 cut(s)	25, 223, 459
NlaIII	CATG	3 cut(s)	14, 617, 671
NlaIV	GGNNCC	2 cut(s)	139, 153
PagI	TCATGA	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	327
PfeI	GAWTC	4 cut(s)	7, 43, 76, 317
PleI	GAGTC	2 cut(s)	77, 248
PpsI	GAGTC	2 cut(s)	77, 248
PshBI	ATTAAT	1 cut(s)	390
Psp124BI	GAGCTC	1 cut(s)	703
PspN4I	GGNNCC	2 cut(s)	139, 153
RsaI	GTAC	2 cut(s)	490, 578
RsaNI	GTAC	2 cut(s)	489, 577
RseI	CAYNNNNRTG	1 cut(s)	500
SacI	GAGCTC	1 cut(s)	703
SaqAI	TTAA	3 cut(s)	117, 390, 447
Sau3AI	GATC	3 cut(s)	25, 223, 459
SchI	GAGTC	2 cut(s)	77, 248
SduI	GDGCHC	1 cut(s)	703
SfaNI	GCATC	1 cut(s)	651
SfcI	CTRYAG	1 cut(s)	558
SmiMI	CAYNNNNRTG	1 cut(s)	500
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	2 cut(s)	132, 717
SspMI	CTAG	1 cut(s)	210
SstI	GAGCTC	1 cut(s)	703
TaaI	ACNGT	1 cut(s)	545
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	3 cut(s)	79, 179, 407
TasI	AATT	2 cut(s)	132, 717
TatI	WGTACW	2 cut(s)	488, 576
TfiI	GAWTC	4 cut(s)	7, 43, 76, 317
Tru1I	TTAA	3 cut(s)	117, 390, 447
Tru9I	TTAA	3 cut(s)	117, 390, 447
TspDTI	ATGAA	3 cut(s)	27, 183, 602
VspI	ATTAAT	1 cut(s)	390
XapI	RAATTY	1 cut(s)	717
XmnI	GAANNNNTTC	1 cut(s)	327
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.