Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003846

Physical Location & Seq

Genomic Coordinates Forward (+)

31439814 .. 31442512

Gene Structure 2699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1312000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGTTCCGCAGACGATTGATTTGTTGAAGAAGCAGCTTCCGGTGCACCAAGAATCCCTGCTGCTCACCGGTCACACCACCACCGGCCTTGTCCTCGTCGACGTCGTTAATGGCTTCTGCACCGTCGGTGCTGGCAATTTGGCACCAAGACAGCCTGATAAACAAATTTCTGAAATGGTGCAAGAGTCAGTGAGACTAGCCAGAGTTTTCTGTGACAAGAAATGGCCTGTTTTTGCTTTCCTTGATTCTCATCACCCTGACATTCCCGAGGATCCTTACCCTCCCCATTGCATTGTTGGAACTGATGAATCAAATCTAGTCCCAGCCCTGCAATGGTTGGAGAACGAACCAAACGTGACACTTAGACGTAAAGATTGCATTGACGGGTTTCTAGGATCCATTGAGAAAGATGGCTCAAATATGTTTGTTAATTGGGTTCAAAGTAATCAGATCAAAGCGATCTTGGTTGTAGGAATATGCACGGATATATGTGTGCTAGACTTCGTATGTACCACTTTGTCTGCAAGAAATCATCGTCTTCTTGCCCCTCTGGAGGATGTCATTGTGTATTCCCATGGTTGTGCCACTTTTGATATTCCAGTTGAGATTGCAAAAACTGCCGAAGATGTTATAGCTCATCCCCAGGAGCTAATGCATCACATAGGCCTTTACATGTCCAAAGGAAGAGGAGCAAAGGTAGTATCAGAAGTGTCATTCGATACAAAAGAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006766 GO:0006767 GO:0006769 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008936 GO:0009056 GO:0009058 GO:0009108 GO:0009112 GO:0009117 GO:0009165 GO:0009719 GO:0009725 GO:0009737 GO:0009820 GO:0009987 GO:0010033 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019362 GO:0019363 GO:0019365 GO:0019438 GO:0019637 GO:0019860 GO:0033993 GO:0034641 GO:0034654 GO:0042221 GO:0042737 GO:0043094 GO:0043173 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044424 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072527 GO:0072529 GO:0090407 GO:0097305 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Isochorismatase

Protein Analysis

245

Amino Acids

27.02

Weight (kDa)

5.29

Isoelectric Point (pI)

46.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Isochorismatase	PF00857	29 - 172	6.4e-20	Isochorismatase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22570 AT2G22570
fragaria_vesca	FvH4_1g19620 FvH4_1g19620
malus_domestica	MD01G1039800.v1.1 MD15G1312000.v1.1
prunus_persica	Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1
pyrus_communis	pycom01g06760 pycom15g27560
rosa_chinensis	RchiOBHm_Chr2g0111171 RchiOBHm_Chr6g0270861
rosa_laevigata	RLG00000013764 RLG00000017870
rosa_multiflora	Rmu_sc0010417.1_g000002 Rmu_sc0030113.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132660 Rroxscaffold_7G00197570
rosa_rugosa	Rorug02G0171200 Rorug06G0056900 Rorug06G0056900
rosa_samantha	Rh2AG224200 Rh2BG235900 Rh2CG227300 Rh2DG231900 Rh6AG176300 Rh6BG179700 Rh6CG175700 Rh6DG168000
rosa_wichuraiana	Rw2G017310 Rw6G015020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	105
AccB1I	GGYRCC	1 cut(s)	142
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	4 cut(s)	266, 279, 390, 403
AcsI	RAATTY	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	1 cut(s)	511
AfiI	CCNNNNNNNGG	2 cut(s)	333, 553
AflIII	ACRYGT	1 cut(s)	672
AgeI	ACCGGT	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	28, 440
AjnI	CCWGG	1 cut(s)	642
AluBI	AGCT	3 cut(s)	37, 635, 649
AluI	AGCT	3 cut(s)	37, 635, 649
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	187
Alw44I	GTGCAC	1 cut(s)	44
AlwI	GGATC	4 cut(s)	266, 279, 390, 403
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	3 cut(s)	85, 224, 664
ApaLI	GTGCAC	1 cut(s)	44
ApeKI	GCWGC	2 cut(s)	34, 61
ApoI	RAATTY	1 cut(s)	165
ArsI	GACNNNNNNTTYG	1 cut(s)	36
AsiGI	ACCGGT	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	58, 245
AvaI	CYCGRG	1 cut(s)	266
BaeGI	GKGCMC	1 cut(s)	48
BamHI	GGATCC	2 cut(s)	271, 395
BanI	GGYRCC	1 cut(s)	142
BbsI	GAAGAC	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	46, 48
BccI	CCATC	1 cut(s)	404
BciT130I	CCWGG	1 cut(s)	644
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	4 cut(s)	197, 317, 392, 497
BisI	GCNGC	2 cut(s)	35, 62
BlsI	GCNGC	2 cut(s)	36, 63
Bme1390I	CCNGG	1 cut(s)	644
BmeT110I	CYCGRG	1 cut(s)	266
BmiI	GGNNCC	4 cut(s)	6, 144, 273, 397
BmrFI	CCNGG	1 cut(s)	644
BmsI	GCATC	1 cut(s)	664
BpiI	GAAGAC	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	572
BsaBI	GATNNNNATC	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	3 cut(s)	267, 574, 642
BsaWI	WCCGGW	2 cut(s)	40, 68
BsaXI	ACNNNNNCTCC	2 cut(s)	681, 711
Bsc4I	CCNNNNNNNGG	2 cut(s)	333, 553
Bse118I	RCCGGY	2 cut(s)	68, 83
Bse1I	ACTGG	1 cut(s)	599
Bse3DI	GCAATG	2 cut(s)	286, 338
Bse8I	GATNNNNATC	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	644
BseDI	CCNNGG	3 cut(s)	267, 574, 642
BseGI	GGATG	2 cut(s)	562, 637
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	2 cut(s)	333, 553
BseMI	GCAATG	2 cut(s)	286, 338
BseNI	ACTGG	1 cut(s)	599
BseRI	GAGGAG	1 cut(s)	702
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	46, 48
BseYI	CCCAGC	1 cut(s)	322
BsgI	GTGCAG	1 cut(s)	103
BshFI	GGCC	3 cut(s)	87, 226, 666
BshNI	GGYRCC	1 cut(s)	142
BshTI	ACCGGT	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	3 cut(s)	41, 69, 84
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	2 cut(s)	333, 553
BsmAI	GTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	3 cut(s)	87, 226, 666
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	4 cut(s)	271, 395, 450, 459
Bsp19I	CCATGG	1 cut(s)	574
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	3 cut(s)	87, 226, 666
BspLI	GGNNCC	4 cut(s)	6, 144, 273, 397
BspPI	GGATC	4 cut(s)	266, 279, 390, 403
BspT107I	GGYRCC	1 cut(s)	142
BsrDI	GCAATG	2 cut(s)	286, 338
BsrFI	RCCGGY	2 cut(s)	68, 83
BsrI	ACTGG	1 cut(s)	599
BssAI	RCCGGY	2 cut(s)	68, 83
BssECI	CCNNGG	3 cut(s)	267, 574, 642
BssMI	GATC	4 cut(s)	271, 395, 450, 459
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	574
Bst2UI	CCWGG	1 cut(s)	644
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	679
BstACI	GRCGYC	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	362
BstDSI	CCRYGG	1 cut(s)	574
BstF5I	GGATG	2 cut(s)	562, 637
BstKTI	GATC	4 cut(s)	274, 398, 453, 462
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	4 cut(s)	271, 395, 450, 459
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 617
BstNI	CCWGG	1 cut(s)	644
BstNSI	RCATGY	1 cut(s)	676
BstSCI	CCNGG	1 cut(s)	642
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	46, 48
BstV2I	GAAGAC	1 cut(s)	530
BstX2I	RGATCY	2 cut(s)	271, 395
BstYI	RGATCY	2 cut(s)	271, 395
BsuRI	GGCC	3 cut(s)	87, 226, 666
BtgI	CCRYGG	1 cut(s)	574
BtsCI	GGATG	2 cut(s)	562, 637
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	133
Cfr10I	RCCGGY	2 cut(s)	68, 83
Csp6I	GTAC	1 cut(s)	510
CspAI	ACCGGT	1 cut(s)	68
CspCI	CAANNNNNGTGG	2 cut(s)	70, 105
CviAII	CATG	3 cut(s)	575, 673, 732
CviQI	GTAC	1 cut(s)	510
DdeI	CTNAG	1 cut(s)	362
DpnI	GATC	4 cut(s)	273, 397, 452, 461
DpnII	GATC	4 cut(s)	271, 395, 450, 459
Eam1104I	CTCTTC	1 cut(s)	679
EarI	CTCTTC	1 cut(s)	679
Eco130I	CCWWGG	1 cut(s)	574
Eco147I	AGGCCT	1 cut(s)	666
Eco88I	CYCGRG	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	642
EcoT14I	CCWWGG	1 cut(s)	574
EcoT22I	ATGCAT	1 cut(s)	657
ErhI	CCWWGG	1 cut(s)	574
FaeI	CATG	3 cut(s)	578, 676, 735
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	3 cut(s)	574, 672, 731
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	35, 62
FokI	GGATG	2 cut(s)	569, 624
Fsp4HI	GCNGC	2 cut(s)	35, 62
FspBI	CTAG	4 cut(s)	197, 317, 392, 497
GluI	GCNGC	2 cut(s)	35, 62
GsaI	CCCAGC	1 cut(s)	326
GsuI	CTGGAG	1 cut(s)	572
HaeIII	GGCC	3 cut(s)	87, 226, 666
HapII	CCGG	3 cut(s)	41, 69, 84
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	3 cut(s)	578, 676, 735
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	4 cut(s)	53, 185, 245, 308
HpaII	CCGG	3 cut(s)	41, 69, 84
HphI	GGTGA	2 cut(s)	58, 245
Hpy166II	GTNNAC	2 cut(s)	46, 100
Hpy188I	TCNGA	3 cut(s)	172, 450, 706
Hpy188III	TCNNGA	2 cut(s)	266, 551
Hpy8I	GTNNAC	2 cut(s)	46, 100
Hpy99I	CGWCG	4 cut(s)	101, 104, 107, 128
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	3 cut(s)	102, 354, 367
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 617
HpyF3I	CTNAG	1 cut(s)	362
HpySE526I	ACGT	3 cut(s)	102, 354, 367
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	578, 676, 735
Kzo9I	GATC	4 cut(s)	271, 395, 450, 459
LmnI	GCTCC	2 cut(s)	646, 689
Lsp1109I	GCAGC	2 cut(s)	46, 48
LweI	GCATC	1 cut(s)	664
MaeI	CTAG	4 cut(s)	197, 317, 392, 497
MaeII	ACGT	3 cut(s)	102, 354, 367
MaeIII	GTNAC	3 cut(s)	71, 212, 355
MalI	GATC	4 cut(s)	273, 397, 452, 461
MboI	GATC	4 cut(s)	271, 395, 450, 459
MboII	GAAGA	4 cut(s)	40, 530, 635, 696
MflI	RGATCY	2 cut(s)	271, 395
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	3 cut(s)	136, 165, 430
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	2 cut(s)	277, 318
MnlI	CCTC	6 cut(s)	104, 262, 291, 547, 558, 680
Mph1103I	ATGCAT	1 cut(s)	657
MseI	TTAA	2 cut(s)	108, 429
MslI	CAYNNNNRTG	1 cut(s)	579
MspI	CCGG	3 cut(s)	41, 69, 84
MspR9I	CCNGG	1 cut(s)	644
MvaI	CCWGG	1 cut(s)	644
MwoI	GCNNNNNNNGC	2 cut(s)	43, 617
NcoI	CCATGG	1 cut(s)	574
NdeII	GATC	4 cut(s)	271, 395, 450, 459
NlaIII	CATG	3 cut(s)	578, 676, 735
NlaIV	GGNNCC	4 cut(s)	6, 144, 273, 397
NmuCI	GTSAC	3 cut(s)	71, 212, 355
NsiI	ATGCAT	1 cut(s)	657
NspI	RCATGY	1 cut(s)	676
PceI	AGGCCT	1 cut(s)	666
PciI	ACATGT	1 cut(s)	672
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 351
PfeI	GAWTC	3 cut(s)	53, 245, 308
PinAI	ACCGGT	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	36, 63
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PscI	ACATGT	1 cut(s)	672
Psp6I	CCWGG	1 cut(s)	642
PspFI	CCCAGC	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	642
PspN4I	GGNNCC	4 cut(s)	6, 144, 273, 397
PsuI	RGATCY	2 cut(s)	271, 395
RsaI	GTAC	1 cut(s)	511
RsaNI	GTAC	1 cut(s)	510
RseI	CAYNNNNRTG	1 cut(s)	579
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	108, 429
SatI	GCNGC	2 cut(s)	35, 62
Sau3AI	GATC	4 cut(s)	271, 395, 450, 459
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	644
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	7 cut(s)	39, 105, 357, 370, 637, 651, 699
SfaNI	GCATC	1 cut(s)	664
SgrDI	CGTCGACG	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	579
Sse9I	AATT	3 cut(s)	136, 165, 430
SseBI	AGGCCT	1 cut(s)	666
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	4 cut(s)	197, 317, 392, 497
StuI	AGGCCT	1 cut(s)	666
StyD4I	CCNGG	1 cut(s)	642
StyI	CCWWGG	1 cut(s)	574
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	3 cut(s)	105, 357, 370
TaqI	TCGA	2 cut(s)	99, 717
TasI	AATT	3 cut(s)	136, 165, 430
TfiI	GAWTC	3 cut(s)	53, 245, 308
Tru1I	TTAA	2 cut(s)	108, 429
Tru9I	TTAA	2 cut(s)	108, 429
TscAI	CASTG	1 cut(s)	195
TseFI	GTSAC	3 cut(s)	71, 212, 355
TseI	GCWGC	2 cut(s)	34, 61
Tsp45I	GTSAC	3 cut(s)	71, 212, 355
TspDTI	ATGAA	1 cut(s)	321
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	1 cut(s)	195
VneI	GTGCAC	1 cut(s)	44
XapI	RAATTY	1 cut(s)	165
XceI	RCATGY	1 cut(s)	676
XcmI	CCANNNNNNNNNTGG	2 cut(s)	293, 330
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	4 cut(s)	197, 317, 392, 497
ZraI	GACGTC	1 cut(s)	103
Zsp2I	ATGCAT	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.