Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003846

Physical Location & Seq

Genomic Coordinates Reverse (-)

40510459 .. 40512217

Gene Structure 1759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013764

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGTGTCTCAGACAATTGATCTTTTGAAGAATGAAATTCCTCTGGACCAGGAACCTGTGGATTTGTCAGAGGATGTTGTTACTGGCCTTGTTCTAGTGGACATAATCAATGGCTTCTGTACTGTTGGTGCTGGAAATCTGGCTCCAAGAGAACCCGATAGGCAGATCTCGGAGATGATTAGTGAGTCTGCAAGACTTGCCAGACACTTTTGTGAAAAGAAATGGCCAGTTTTGGCATTCATTGATTCTCATCAACCTGAAAAGCTCGAAGACCCTTATCCCCTTCATTGTATTGAGGGCACTGATGAATCAAACTTGGTCCCTGCGTTAAGTTGGTTGGAGAAAGAACCAAATGTCACAATCAGGCGCAAAGATTGCTACGATGGATTTTTGGGCTCAATTCAACCTGATGGTTCAAATGCTTTTGTAGATTGGGTGAAGAAAAATCAGATCAGAACTTTATTGGTAGTAGGGATATGCACGGACATCTGTGTGCTGGACTTTGTTTGTTCCACAATATCAGCTAGAAACCGTGGTTTTCTAACCCCTTTGGTGGACGTAGTGGTTCACTCGCGTGCCTGCGCCACATTTAATGTTCCTCTGCAGGTTGCCAGAAACACCAAAGGAGCTTTAGCTCATCCTCAGGAACTGATGCATCATATAGGACTCTACATGGCAAAGGAAAGAGGAGCCAAAATAGCAAATCAAGTGTCCTGGGTCGGAGCTAAAGAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0017144 GO:0019860 GO:0034641 GO:0042737 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Isochorismatase

Protein Analysis

246

Amino Acids

27.18

Weight (kDa)

5.38

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Isochorismatase	PF00857	29 - 203	7.6e-24	Isochorismatase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22570 AT2G22570
fragaria_vesca	FvH4_1g19620 FvH4_1g19620
malus_domestica	MD01G1039800.v1.1 MD15G1312000.v1.1
prunus_persica	Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1
pyrus_communis	pycom01g06760 pycom15g27560
rosa_chinensis	RchiOBHm_Chr2g0111171 RchiOBHm_Chr6g0270861
rosa_laevigata	RLG00000013764 RLG00000017870
rosa_multiflora	Rmu_sc0010417.1_g000002 Rmu_sc0030113.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132660 Rroxscaffold_7G00197570
rosa_rugosa	Rorug02G0171200 Rorug06G0056900 Rorug06G0056900
rosa_samantha	Rh2AG224200 Rh2BG235900 Rh2CG227300 Rh2DG231900 Rh6AG176300 Rh6BG179700 Rh6CG175700 Rh6DG168000
rosa_wichuraiana	Rw2G017310 Rw6G015020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	595
AccII	CGCG	1 cut(s)	574
AcoI	YGGCCR	1 cut(s)	224
AcsI	RAATTY	1 cut(s)	36
AfaI	GTAC	1 cut(s)	121
AfiI	CCNNNNNNNGG	1 cut(s)	553
AgsI	TTSAA	3 cut(s)	28, 404, 417
AjnI	CCWGG	2 cut(s)	48, 713
AleI	CACNNNNGTG	2 cut(s)	210, 573
AluBI	AGCT	6 cut(s)	265, 524, 629, 635, 725, 733
AluI	AGCT	6 cut(s)	265, 524, 629, 635, 725, 733
Alw26I	GTCTC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	649
AoxI	GGCC	2 cut(s)	85, 224
ApoI	RAATTY	1 cut(s)	36
ArsI	GACNNNNNNTTYG	2 cut(s)	695, 727
AspLEI	GCGC	2 cut(s)	369, 584
AspS9I	GGNCC	2 cut(s)	46, 319
AsuHPI	GGTGA	1 cut(s)	448
AvaII	GGWCC	2 cut(s)	46, 319
AxyI	CCTNAGG	1 cut(s)	642
BaeGI	GKGCMC	1 cut(s)	302
BalI	TGGCCA	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	276
BccI	CCATC	2 cut(s)	377, 404
BciT130I	CCWGG	2 cut(s)	50, 715
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	2 cut(s)	95, 525
BfmI	CTRYAG	1 cut(s)	602
BfuAI	ACCTGC	1 cut(s)	595
BglII	AGATCT	1 cut(s)	165
Bme1390I	CCNGG	2 cut(s)	50, 715
Bme18I	GGWCC	2 cut(s)	46, 319
BmgT120I	GGNCC	2 cut(s)	46, 319
BmiI	GGNNCC	4 cut(s)	54, 144, 321, 691
BmrFI	CCNGG	2 cut(s)	50, 715
BmsI	GCATC	2 cut(s)	642, 664
BpiI	GAAGAC	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	249
BsaJI	CCNNGG	2 cut(s)	532, 714
Bsc4I	CCNNNNNNNGG	1 cut(s)	553
Bse1I	ACTGG	2 cut(s)	88, 227
Bse21I	CCTNAGG	1 cut(s)	642
Bse8I	GATNNNNATC	1 cut(s)	249
BseBI	CCWGG	2 cut(s)	50, 715
BseDI	CCNNGG	2 cut(s)	532, 714
BseGI	GGATG	2 cut(s)	79, 637
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	553
BseMII	CTCAG	2 cut(s)	23, 656
BseNI	ACTGG	2 cut(s)	88, 227
BseRI	GAGGAG	1 cut(s)	702
BseSI	GKGCMC	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	574
BshFI	GGCC	2 cut(s)	87, 226
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	553
BsmAI	GTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	305
BsmI	GAATGC	1 cut(s)	236
BsnI	GGCC	2 cut(s)	87, 226
Bsp1286I	GDGCHC	2 cut(s)	302, 398
Bsp143I	GATC	3 cut(s)	19, 165, 450
BspANI	GGCC	2 cut(s)	87, 226
BspCNI	CTCAG	2 cut(s)	22, 655
BspFNI	CGCG	1 cut(s)	574
BspLI	GGNNCC	4 cut(s)	54, 144, 321, 691
BspMAI	CTGCAG	1 cut(s)	606
BspMI	ACCTGC	1 cut(s)	595
BsrI	ACTGG	2 cut(s)	88, 227
BssECI	CCNNGG	2 cut(s)	532, 714
BssMI	GATC	3 cut(s)	19, 165, 450
Bst2UI	CCWGG	2 cut(s)	50, 715
Bst4CI	ACNGT	2 cut(s)	124, 533
BstAPI	GCANNNNNTGC	2 cut(s)	197, 375
BstC8I	GCNNGC	2 cut(s)	576, 580
BstDEI	CTNAG	2 cut(s)	9, 642
BstDSI	CCRYGG	1 cut(s)	532
BstF5I	GGATG	2 cut(s)	79, 637
BstFNI	CGCG	1 cut(s)	574
BstHHI	GCGC	2 cut(s)	369, 584
BstKTI	GATC	3 cut(s)	22, 168, 453
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	3 cut(s)	19, 165, 450
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 375, 698
BstNI	CCWGG	2 cut(s)	50, 715
BstSCI	CCNGG	2 cut(s)	48, 713
BstSFI	CTRYAG	1 cut(s)	602
BstSLI	GKGCMC	1 cut(s)	302
BstUI	CGCG	1 cut(s)	574
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
Bsu36I	CCTNAGG	1 cut(s)	642
BsuRI	GGCC	2 cut(s)	87, 226
BtgI	CCRYGG	1 cut(s)	532
BtsCI	GGATG	2 cut(s)	79, 637
BtsIMutI	CAGTG	1 cut(s)	300
BveI	ACCTGC	1 cut(s)	595
Cac8I	GCNNGC	2 cut(s)	576, 580
CaiI	CAGNNNCTG	1 cut(s)	649
CfoI	GCGC	2 cut(s)	369, 584
Cfr13I	GGNCC	2 cut(s)	46, 319
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	1 cut(s)	673
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	2 cut(s)	9, 642
DpnI	GATC	3 cut(s)	21, 167, 452
DpnII	GATC	3 cut(s)	19, 165, 450
EaeI	YGGCCR	1 cut(s)	224
Eco24I	GRGCYC	1 cut(s)	398
Eco47I	GGWCC	2 cut(s)	46, 319
Eco81I	CCTNAGG	1 cut(s)	642
EcoRII	CCWGG	2 cut(s)	48, 713
EcoT22I	ATGCAT	1 cut(s)	657
EcoT38I	GRGCYC	1 cut(s)	398
FaeI	CATG	1 cut(s)	676
FaiI	YATR	6 cut(s)	104, 478, 660, 662, 674, 736
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	1 cut(s)	672
FokI	GGATG	2 cut(s)	86, 624
FriOI	GRGCYC	1 cut(s)	398
FspBI	CTAG	2 cut(s)	95, 525
GlaI	GCGC	2 cut(s)	368, 583
HaeIII	GGCC	2 cut(s)	87, 226
HhaI	GCGC	2 cut(s)	369, 584
Hin1II	CATG	1 cut(s)	676
Hin6I	GCGC	2 cut(s)	367, 582
HinP1I	GCGC	2 cut(s)	367, 582
HinfI	GANTC	4 cut(s)	185, 245, 308, 666
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	3 cut(s)	100, 556, 568
Hpy188I	TCNGA	6 cut(s)	12, 70, 172, 450, 455, 722
Hpy188III	TCNNGA	2 cut(s)	44, 644
Hpy8I	GTNNAC	3 cut(s)	100, 556, 568
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	2 cut(s)	124, 533
HpyCH4IV	ACGT	1 cut(s)	558
HpyCH4V	TGCA	4 cut(s)	191, 480, 604, 655
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 375, 698
HpyF3I	CTNAG	2 cut(s)	9, 642
HpySE526I	ACGT	1 cut(s)	558
Hsp92II	CATG	1 cut(s)	676
HspAI	GCGC	2 cut(s)	367, 582
Kzo9I	GATC	3 cut(s)	19, 165, 450
LmnI	GCTCC	4 cut(s)	148, 626, 689, 722
LweI	GCATC	2 cut(s)	642, 664
MaeI	CTAG	2 cut(s)	95, 525
MaeII	ACGT	1 cut(s)	558
MaeIII	GTNAC	2 cut(s)	79, 355
MalI	GATC	3 cut(s)	21, 167, 452
MboI	GATC	3 cut(s)	19, 165, 450
MboII	GAAGA	3 cut(s)	40, 281, 451
MfeI	CAATTG	1 cut(s)	15
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	2 cut(s)	302, 398
MlsI	TGGCCA	1 cut(s)	226
MluCI	AATT	3 cut(s)	15, 36, 399
MluNI	TGGCCA	1 cut(s)	226
MlyI	GAGTC	2 cut(s)	194, 660
MmeI	TCCRAC	2 cut(s)	318, 700
MnlI	CCTC	6 cut(s)	51, 64, 289, 609, 651, 680
Mox20I	TGGCCA	1 cut(s)	226
Mph1103I	ATGCAT	1 cut(s)	657
MscI	TGGCCA	1 cut(s)	226
MseI	TTAA	2 cut(s)	329, 591
MslI	CAYNNNNRTG	3 cut(s)	210, 491, 573
Msp20I	TGGCCA	1 cut(s)	226
MspR9I	CCNGG	2 cut(s)	50, 715
MunI	CAATTG	1 cut(s)	15
Mva1269I	GAATGC	1 cut(s)	236
MvaI	CCWGG	2 cut(s)	50, 715
MvnI	CGCG	1 cut(s)	574
MwoI	GCNNNNNNNGC	3 cut(s)	197, 375, 698
NdeII	GATC	3 cut(s)	19, 165, 450
NlaIII	CATG	1 cut(s)	676
NlaIV	GGNNCC	4 cut(s)	54, 144, 321, 691
NmuCI	GTSAC	1 cut(s)	355
NsiI	ATGCAT	1 cut(s)	657
OliI	CACNNNNGTG	2 cut(s)	210, 573
PctI	GAATGC	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	245, 308
PleI	GAGTC	2 cut(s)	193, 660
PpsI	GAGTC	2 cut(s)	193, 660
Psp6I	CCWGG	2 cut(s)	48, 713
PspGI	CCWGG	2 cut(s)	48, 713
PspN4I	GGNNCC	4 cut(s)	54, 144, 321, 691
PspPI	GGNCC	2 cut(s)	46, 319
PstI	CTGCAG	1 cut(s)	606
PstNI	CAGNNNCTG	1 cut(s)	649
PsuI	RGATCY	1 cut(s)	165
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
RseI	CAYNNNNRTG	3 cut(s)	210, 491, 573
SaqAI	TTAA	2 cut(s)	329, 591
Sau3AI	GATC	3 cut(s)	19, 165, 450
Sau96I	GGNCC	2 cut(s)	46, 319
SchI	GAGTC	2 cut(s)	194, 660
ScrFI	CCNGG	2 cut(s)	50, 715
SduI	GDGCHC	2 cut(s)	302, 398
SfaNI	GCATC	2 cut(s)	642, 664
SfcI	CTRYAG	1 cut(s)	602
SinI	GGWCC	2 cut(s)	46, 319
SmiMI	CAYNNNNRTG	3 cut(s)	210, 491, 573
Sse9I	AATT	3 cut(s)	15, 36, 399
SspMI	CTAG	2 cut(s)	95, 525
StyD4I	CCNGG	2 cut(s)	48, 713
TaaI	ACNGT	2 cut(s)	124, 533
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	1 cut(s)	267
TasI	AATT	3 cut(s)	15, 36, 399
TatI	WGTACW	1 cut(s)	119
TfiI	GAWTC	2 cut(s)	245, 308
Tru1I	TTAA	2 cut(s)	329, 591
Tru9I	TTAA	2 cut(s)	329, 591
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	355
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	4 cut(s)	48, 229, 275, 321
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	2 cut(s)	46, 319
XapI	RAATTY	1 cut(s)	36
XspI	CTAG	2 cut(s)	95, 525
Zsp2I	ATGCAT	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.