Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003846

Physical Location & Seq

Genomic Coordinates Forward (+)

23017482 .. 23020018

Gene Structure 2537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG231900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCTCCACAGACGGTTGATTTGTTAAAGGAGCAGATGCCGGTGCACCAGGAATCTCTACTAGTCACCGGCGACGTCAAGACCGGCCTTGTCCTCGTCGACGTCGTTAACGGCTTCTGCACCGTCGGCGCTGGCAACCTGGCTCCAAGGCAACCGGACAAGCAGATCTCGGAGATGGTGAAGGAGTCGGTGAGTCTTGCCAGAGTTTTCTGTGAGAAGAAATGGCCTGTTTTTGGTTTTCTTGATTCTCATCACCCTGATATTCCTGAGCATCCTTATCCTCCTCATTGCATTGCTGGTACTGATGAATCAAAGCTAGTTCCAGAGCTGCAGTGGTTGGAGAGTGAACCTAATGTGACACTGCAGTGTAAAGATTGCATTGATGGGTTTCTTGGTTCGATTGAGAAAGACGGTTCCAATGTGTTTGTAAATTGGGTTAAGAGCAATCAGATCAAAACTATCTTGGTGCTAGGGATATGCACAGATATATGTGTGCTGGATTTTGTATGTAGCACTTTATCTGCGAGAAATCGTCGTTTTCTTGAACCTCTGGAGGATGTGATAGTGTATTCCGGTGGTTGTGCCACCTTTGATCTTCCGGTTGATGTTGCCAAATCTATGAAAGATGTTGTAGCACATCCCCAGGATCTAATGCATCACATAGGCCTATACATAGCCAAAGGAAGGGGAGCAAAGGTCGTGTCAGAGGTGTCATTTGGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006766 GO:0006767 GO:0006769 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008936 GO:0009056 GO:0009058 GO:0009108 GO:0009112 GO:0009117 GO:0009165 GO:0009719 GO:0009725 GO:0009737 GO:0009820 GO:0009987 GO:0010033 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019362 GO:0019363 GO:0019365 GO:0019438 GO:0019637 GO:0019860 GO:0033993 GO:0034641 GO:0034654 GO:0042221 GO:0042737 GO:0043094 GO:0043173 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044424 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072527 GO:0072529 GO:0090407 GO:0097305 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Isochorismatase

Protein Analysis

241

Amino Acids

26.41

Weight (kDa)

5.21

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Isochorismatase	PF00857	29 - 173	5.4e-20	Isochorismatase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22570 AT2G22570
fragaria_vesca	FvH4_1g19620 FvH4_1g19620
malus_domestica	MD01G1039800.v1.1 MD15G1312000.v1.1
prunus_persica	Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1
pyrus_communis	pycom01g06760 pycom15g27560
rosa_chinensis	RchiOBHm_Chr2g0111171 RchiOBHm_Chr6g0270861
rosa_laevigata	RLG00000013764 RLG00000017870
rosa_multiflora	Rmu_sc0010417.1_g000002 Rmu_sc0030113.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132660 Rroxscaffold_7G00197570
rosa_rugosa	Rorug02G0171200 Rorug06G0056900 Rorug06G0056900
rosa_samantha	Rh2AG224200 Rh2BG235900 Rh2CG227300 Rh2DG231900 Rh6AG176300 Rh6BG179700 Rh6CG175700 Rh6DG168000
rosa_wichuraiana	Rw2G017310 Rw6G015020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	78, 105
AccI	GTMKAC	1 cut(s)	99
AclWI	GGATC	1 cut(s)	654
AcyI	GRCGYC	2 cut(s)	75, 102
AfaI	GTAC	1 cut(s)	301
AfiI	CCNNNNNNNGG	2 cut(s)	233, 684
AgsI	TTSAA	1 cut(s)	545
AhlI	ACTAGT	1 cut(s)	61
AjnI	CCWGG	3 cut(s)	48, 138, 642
AleI	CACNNNNGTG	1 cut(s)	364
AluBI	AGCT	2 cut(s)	316, 328
AluI	AGCT	2 cut(s)	316, 328
Alw21I	GWGCWC	1 cut(s)	48
Alw44I	GTGCAC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	654
AoxI	GGCC	3 cut(s)	85, 224, 664
ApaLI	GTGCAC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	328
ArsI	GACNNNNNNTTYG	3 cut(s)	36, 686, 718
AspLEI	GCGC	1 cut(s)	131
AsuHPI	GGTGA	4 cut(s)	58, 190, 202, 245
BaeGI	GKGCMC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	315
BccI	CCATC	2 cut(s)	169, 377
BceAI	ACGGC	1 cut(s)	127
BciT130I	CCWGG	3 cut(s)	50, 140, 644
BcuI	ACTAGT	1 cut(s)	61
BfaI	CTAG	3 cut(s)	62, 317, 470
BfmI	CTRYAG	2 cut(s)	329, 362
BfoI	RGCGCY	1 cut(s)	132
BglII	AGATCT	1 cut(s)	165
BisI	GCNGC	1 cut(s)	329
BlsI	GCNGC	1 cut(s)	330
Bme1390I	CCNGG	3 cut(s)	50, 140, 644
BmiI	GGNNCC	3 cut(s)	6, 144, 415
BmrFI	CCNGG	3 cut(s)	50, 140, 644
BmsI	GCATC	3 cut(s)	27, 280, 664
BpmI	CTGGAG	1 cut(s)	572
Bpu10I	CCTNAGC	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	249
BsaHI	GRCGYC	2 cut(s)	75, 102
BsaJI	CCNNGG	2 cut(s)	146, 642
BsaWI	WCCGGW	3 cut(s)	154, 572, 598
BsaXI	ACNNNNNCTCC	2 cut(s)	681, 711
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 684
Bse118I	RCCGGY	3 cut(s)	40, 68, 83
Bse3DI	GCAATG	2 cut(s)	286, 291
Bse8I	GATNNNNATC	1 cut(s)	249
BseBI	CCWGG	3 cut(s)	50, 140, 644
BseDI	CCNNGG	2 cut(s)	146, 642
BseGI	GGATG	3 cut(s)	271, 562, 637
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	2 cut(s)	233, 684
BseMI	GCAATG	2 cut(s)	286, 291
BseMII	CTCAG	1 cut(s)	258
BseRI	GAGGAG	1 cut(s)	273
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	315
BsgI	GTGCAG	1 cut(s)	103
BshFI	GGCC	3 cut(s)	87, 226, 666
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	6 cut(s)	41, 69, 84, 155, 573, 599
BslI	CCNNNNNNNGG	2 cut(s)	233, 684
BsnI	GGCC	3 cut(s)	87, 226, 666
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	4 cut(s)	165, 450, 592, 646
BspANI	GGCC	3 cut(s)	87, 226, 666
BspCNI	CTCAG	1 cut(s)	259
BspLI	GGNNCC	3 cut(s)	6, 144, 415
BspMAI	CTGCAG	2 cut(s)	333, 366
BspPI	GGATC	1 cut(s)	654
BsrDI	GCAATG	2 cut(s)	286, 291
BsrFI	RCCGGY	3 cut(s)	40, 68, 83
BssAI	RCCGGY	3 cut(s)	40, 68, 83
BssECI	CCNNGG	2 cut(s)	146, 642
BssMI	GATC	4 cut(s)	165, 450, 592, 646
BssNI	GRCGYC	2 cut(s)	75, 102
BssT1I	CCWWGG	1 cut(s)	146
Bst2UI	CCWGG	3 cut(s)	50, 140, 644
Bst4CI	ACNGT	3 cut(s)	16, 124, 413
BstACI	GRCGYC	2 cut(s)	75, 102
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	267
BstF5I	GGATG	3 cut(s)	271, 562, 637
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	4 cut(s)	168, 453, 595, 649
BstMBI	GATC	4 cut(s)	165, 450, 592, 646
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	3 cut(s)	50, 140, 644
BstSCI	CCNGG	3 cut(s)	48, 138, 642
BstSFI	CTRYAG	2 cut(s)	329, 362
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	315
BstX2I	RGATCY	2 cut(s)	165, 646
BstYI	RGATCY	2 cut(s)	165, 646
BsuRI	GGCC	3 cut(s)	87, 226, 666
BtsCI	GGATG	3 cut(s)	271, 562, 637
BtsI	GCAGTG	3 cut(s)	338, 359, 371
BtsIMutI	CAGTG	3 cut(s)	338, 359, 371
Cac8I	GCNNGC	1 cut(s)	133
CfoI	GCGC	1 cut(s)	131
Cfr10I	RCCGGY	3 cut(s)	40, 68, 83
Csp6I	GTAC	1 cut(s)	300
CviJI	RGCY	9 cut(s)	5, 87, 114, 143, 226, 316, 328, 666, 677
CviKI_1	RGCY	9 cut(s)	5, 87, 114, 143, 226, 316, 328, 666, 677
CviQI	GTAC	1 cut(s)	300
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	4 cut(s)	167, 452, 594, 648
DpnII	GATC	4 cut(s)	165, 450, 592, 646
Eco130I	CCWWGG	1 cut(s)	146
Eco147I	AGGCCT	1 cut(s)	666
EcoRII	CCWGG	3 cut(s)	48, 138, 642
EcoT14I	CCWWGG	1 cut(s)	146
EcoT22I	ATGCAT	1 cut(s)	657
ErhI	CCWWGG	1 cut(s)	146
FaiI	YATR	9 cut(s)	478, 488, 490, 508, 620, 662, 670, 674, 724
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	329
FokI	GGATG	3 cut(s)	258, 569, 624
Fsp4HI	GCNGC	1 cut(s)	329
FspBI	CTAG	3 cut(s)	62, 317, 470
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	1 cut(s)	329
GsuI	CTGGAG	1 cut(s)	572
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	3 cut(s)	87, 226, 666
HapII	CCGG	6 cut(s)	41, 69, 84, 155, 573, 599
HhaI	GCGC	1 cut(s)	131
Hin1I	GRCGYC	2 cut(s)	75, 102
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HincII	GTYRAC	2 cut(s)	100, 109
HindII	GTYRAC	2 cut(s)	100, 109
HinfI	GANTC	5 cut(s)	53, 185, 193, 245, 308
HpaI	GTTAAC	1 cut(s)	109
HpaII	CCGG	6 cut(s)	41, 69, 84, 155, 573, 599
HphI	GGTGA	4 cut(s)	58, 190, 202, 245
Hpy166II	GTNNAC	4 cut(s)	46, 100, 109, 347
Hpy188I	TCNGA	3 cut(s)	172, 450, 706
Hpy188III	TCNNGA	6 cut(s)	79, 242, 266, 323, 542, 551
Hpy8I	GTNNAC	4 cut(s)	46, 100, 109, 347
Hpy99I	CGWCG	6 cut(s)	77, 101, 104, 107, 128, 537
HpyAV	CCTTC	2 cut(s)	175, 678
HpyCH4III	ACNGT	3 cut(s)	16, 124, 413
HpyCH4IV	ACGT	2 cut(s)	75, 102
HpyCH4V	TGCA	9 cut(s)	46, 120, 291, 331, 364, 378, 480, 655, 722
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	267
HpySE526I	ACGT	2 cut(s)	75, 102
Hsp92I	GRCGYC	2 cut(s)	75, 102
HspAI	GCGC	1 cut(s)	129
KspAI	GTTAAC	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	165, 450, 592, 646
LmnI	GCTCC	4 cut(s)	10, 31, 148, 689
Lsp1109I	GCAGC	1 cut(s)	315
LweI	GCATC	3 cut(s)	27, 280, 664
MaeI	CTAG	3 cut(s)	62, 317, 470
MaeII	ACGT	2 cut(s)	75, 102
MaeIII	GTNAC	2 cut(s)	64, 355
MalI	GATC	4 cut(s)	167, 452, 594, 648
MboI	GATC	4 cut(s)	165, 450, 592, 646
MboII	GAAGA	2 cut(s)	229, 587
MflI	RGATCY	2 cut(s)	165, 646
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	1 cut(s)	430
MlyI	GAGTC	2 cut(s)	194, 202
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	6 cut(s)	104, 291, 294, 547, 558, 700
Mph1103I	ATGCAT	1 cut(s)	657
MseI	TTAA	3 cut(s)	26, 108, 438
MslI	CAYNNNNRTG	1 cut(s)	364
MspI	CCGG	6 cut(s)	41, 69, 84, 155, 573, 599
MspR9I	CCNGG	3 cut(s)	50, 140, 644
MvaI	CCWGG	3 cut(s)	50, 140, 644
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeII	GATC	4 cut(s)	165, 450, 592, 646
NlaIV	GGNNCC	3 cut(s)	6, 144, 415
NmuCI	GTSAC	2 cut(s)	64, 355
NsiI	ATGCAT	1 cut(s)	657
OliI	CACNNNNGTG	1 cut(s)	364
PceI	AGGCCT	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PfeI	GAWTC	3 cut(s)	53, 245, 308
PkrI	GCNGC	1 cut(s)	330
PleI	GAGTC	2 cut(s)	193, 201
PpsI	GAGTC	2 cut(s)	193, 201
Psp6I	CCWGG	3 cut(s)	48, 138, 642
PspGI	CCWGG	3 cut(s)	48, 138, 642
PspN4I	GGNNCC	3 cut(s)	6, 144, 415
PstI	CTGCAG	2 cut(s)	333, 366
PsuI	RGATCY	2 cut(s)	165, 646
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
RseI	CAYNNNNRTG	1 cut(s)	364
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	3 cut(s)	26, 108, 438
SatI	GCNGC	1 cut(s)	329
Sau3AI	GATC	4 cut(s)	165, 450, 592, 646
SchI	GAGTC	2 cut(s)	194, 202
ScrFI	CCNGG	3 cut(s)	50, 140, 644
SduI	GDGCHC	1 cut(s)	48
SfaNI	GCATC	3 cut(s)	27, 280, 664
SfcI	CTRYAG	2 cut(s)	329, 362
SgrAI	CRCCGGYG	1 cut(s)	68
SgrDI	CGTCGACG	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	364
SpeI	ACTAGT	1 cut(s)	61
Sse9I	AATT	1 cut(s)	430
SseBI	AGGCCT	1 cut(s)	666
SspMI	CTAG	3 cut(s)	62, 317, 470
StuI	AGGCCT	1 cut(s)	666
StyD4I	CCNGG	3 cut(s)	48, 138, 642
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	3 cut(s)	16, 124, 413
TaiI	ACGT	2 cut(s)	78, 105
TaqI	TCGA	2 cut(s)	99, 398
TasI	AATT	1 cut(s)	430
TfiI	GAWTC	3 cut(s)	53, 245, 308
Tru1I	TTAA	3 cut(s)	26, 108, 438
Tru9I	TTAA	3 cut(s)	26, 108, 438
TscAI	CASTG	3 cut(s)	338, 366, 371
TseFI	GTSAC	2 cut(s)	64, 355
TseI	GCWGC	1 cut(s)	328
Tsp45I	GTSAC	2 cut(s)	64, 355
TspDTI	ATGAA	2 cut(s)	321, 635
TspRI	CASTG	3 cut(s)	338, 366, 371
VneI	GTGCAC	1 cut(s)	44
XcmI	CCANNNNNNNNNTGG	1 cut(s)	330
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	3 cut(s)	62, 317, 470
ZraI	GACGTC	2 cut(s)	76, 103
Zsp2I	ATGCAT	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.