Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003846

Physical Location & Seq

Genomic Coordinates Reverse (-)

13547226 .. 13551234

Gene Structure 4009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1039800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGTTCCTCATACGATTGATTTGTTGAAGGAGCAGCTTCCCGTGAACCAAGAATCCGTGCTGCTCACCGGTCACACCACCACCGGCCTTGTCCTCGTCGACCTCGTTAATGGCTTCTGCACCGTTGGTGCTGGCAATTTGGCACCAAGACAGCCTGATAAGCAAATATCTGAAATGGTGGAAGAGTCAGTGAGACTAGCCAGAGTTTTCTGTGACAAGAAATGGCCTGTCTTTGCTTTCCTTGATTCTCATCACCCTGACATTCCCGAGCATCCTTACCCTCCTCATTGCATTGTTGGAACTGATGAATCAAATCTAGTCCCAGACCTGCAATGGTTGGAGAACGAACCAAATGTGACACTTAGGCGCAAAGATTGCATTAACGGGTTTCTAGGATCGATTGAGAAAGATGGCTCTAATCTGTTTGTTAATTGGGTTCAAAGTAATCAGATAAAAGCTATCTTGGTTGTAGGAATATGCACGGATATATGTGTGCTAGACTTTGTATGTACCACTTTGTCTGCAAGAAATCATCGTCTCCTTGCCCCTCTGGAGGATGTCATTGTGTATTCCCGTGGGTGTGCCACTTTTGATCTTCCAGTTGAGATTGCAAAAACTGCCAAAGATGTTATAACTCATCCCCAGGAGCTGATGCATCACATAGGCCTTTACATGGCCAAAGGAAGAGGAGCGAAGTTAGTGTCAGAAGTGTCATTCGACACAAAAGAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006766 GO:0006767 GO:0006769 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008936 GO:0009056 GO:0009058 GO:0009108 GO:0009112 GO:0009117 GO:0009165 GO:0009719 GO:0009725 GO:0009737 GO:0009820 GO:0009987 GO:0010033 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019362 GO:0019363 GO:0019365 GO:0019438 GO:0019637 GO:0019860 GO:0033993 GO:0034641 GO:0034654 GO:0042221 GO:0042737 GO:0043094 GO:0043173 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044424 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072527 GO:0072529 GO:0090407 GO:0097305 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Isochorismatase

Protein Analysis

245

Amino Acids

27.1

Weight (kDa)

5.41

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Isochorismatase	PF00857	29 - 197	4.2e-20	Isochorismatase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22570 AT2G22570
fragaria_vesca	FvH4_1g19620 FvH4_1g19620
malus_domestica	MD01G1039800.v1.1 MD15G1312000.v1.1
prunus_persica	Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1
pyrus_communis	pycom01g06760 pycom15g27560
rosa_chinensis	RchiOBHm_Chr2g0111171 RchiOBHm_Chr6g0270861
rosa_laevigata	RLG00000013764 RLG00000017870
rosa_multiflora	Rmu_sc0010417.1_g000002 Rmu_sc0030113.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132660 Rroxscaffold_7G00197570
rosa_rugosa	Rorug02G0171200 Rorug06G0056900 Rorug06G0056900
rosa_samantha	Rh2AG224200 Rh2BG235900 Rh2CG227300 Rh2DG231900 Rh6AG176300 Rh6BG179700 Rh6CG175700 Rh6DG168000
rosa_wichuraiana	Rw2G017310 Rw6G015020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	632
Acc36I	ACCTGC	1 cut(s)	336
AccB1I	GGYRCC	1 cut(s)	142
AccI	GTMKAC	1 cut(s)	99
AclWI	GGATC	1 cut(s)	403
AcoI	YGGCCR	1 cut(s)	675
AfaI	GTAC	1 cut(s)	511
AfiI	CCNNNNNNNGG	2 cut(s)	553, 673
AgeI	ACCGGT	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	28, 440
AjnI	CCWGG	1 cut(s)	642
AloI	GAACNNNNNNTCC	2 cut(s)	38, 70
AluBI	AGCT	3 cut(s)	37, 458, 649
AluI	AGCT	3 cut(s)	37, 458, 649
Alw26I	GTCTC	2 cut(s)	187, 542
AlwI	GGATC	1 cut(s)	403
AlwNI	CAGNNNCTG	1 cut(s)	649
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	4 cut(s)	85, 224, 664, 675
ApeKI	GCWGC	2 cut(s)	34, 61
ArsI	GACNNNNNNTTYG	2 cut(s)	686, 718
AsiGI	ACCGGT	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	369
AsuHPI	GGTGA	2 cut(s)	58, 245
AvaI	CYCGRG	1 cut(s)	266
BalI	TGGCCA	1 cut(s)	677
BanI	GGYRCC	1 cut(s)	142
BbvI	GCAGC	2 cut(s)	46, 48
BccI	CCATC	1 cut(s)	404
BciT130I	CCWGG	1 cut(s)	644
BcoDI	GTCTC	2 cut(s)	187, 542
BfaI	CTAG	4 cut(s)	197, 317, 392, 497
BfuAI	ACCTGC	1 cut(s)	336
BisI	GCNGC	2 cut(s)	35, 62
BlsI	GCNGC	2 cut(s)	36, 63
Bme1390I	CCNGG	1 cut(s)	644
BmeT110I	CYCGRG	1 cut(s)	266
BmiI	GGNNCC	2 cut(s)	6, 144
BmrFI	CCNGG	1 cut(s)	644
BmsI	GCATC	3 cut(s)	280, 642, 664
BpmI	CTGGAG	1 cut(s)	572
Bsa29I	ATCGAT	1 cut(s)	398
BsaBI	GATNNNNATC	1 cut(s)	249
BsaJI	CCNNGG	2 cut(s)	574, 642
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	2 cut(s)	553, 673
Bse118I	RCCGGY	2 cut(s)	68, 83
Bse1I	ACTGG	1 cut(s)	599
Bse3DI	GCAATG	2 cut(s)	286, 338
Bse8I	GATNNNNATC	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	644
BseCI	ATCGAT	1 cut(s)	398
BseDI	CCNNGG	2 cut(s)	574, 642
BseGI	GGATG	3 cut(s)	271, 562, 637
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	2 cut(s)	553, 673
BseMI	GCAATG	2 cut(s)	286, 338
BseNI	ACTGG	1 cut(s)	599
BseRI	GAGGAG	2 cut(s)	273, 702
BseXI	GCAGC	2 cut(s)	46, 48
BsgI	GTGCAG	1 cut(s)	103
BshFI	GGCC	4 cut(s)	87, 226, 666, 677
BshNI	GGYRCC	1 cut(s)	142
BshTI	ACCGGT	1 cut(s)	68
BshVI	ATCGAT	1 cut(s)	398
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	69, 84
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	2 cut(s)	553, 673
BsmAI	GTCTC	2 cut(s)	187, 542
BsmBI	CGTCTC	1 cut(s)	542
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	4 cut(s)	87, 226, 666, 677
BsoBI	CYCGRG	1 cut(s)	266
Bsp143I	GATC	2 cut(s)	395, 592
BspANI	GGCC	4 cut(s)	87, 226, 666, 677
BspDI	ATCGAT	1 cut(s)	398
BspLI	GGNNCC	2 cut(s)	6, 144
BspMI	ACCTGC	1 cut(s)	336
BspPI	GGATC	1 cut(s)	403
BspT107I	GGYRCC	1 cut(s)	142
BsrDI	GCAATG	2 cut(s)	286, 338
BsrFI	RCCGGY	2 cut(s)	68, 83
BsrI	ACTGG	1 cut(s)	599
BssAI	RCCGGY	2 cut(s)	68, 83
BssECI	CCNNGG	2 cut(s)	574, 642
BssMI	GATC	2 cut(s)	395, 592
Bst2UI	CCWGG	1 cut(s)	644
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	2 cut(s)	177, 679
BstAPI	GCANNNNNTGC	2 cut(s)	375, 617
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	362
BstDSI	CCRYGG	1 cut(s)	574
BstF5I	GGATG	3 cut(s)	271, 562, 637
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	2 cut(s)	398, 595
BstMAI	GTCTC	2 cut(s)	187, 542
BstMBI	GATC	2 cut(s)	395, 592
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 375, 617
BstNI	CCWGG	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	642
BstV1I	GCAGC	2 cut(s)	46, 48
Bsu15I	ATCGAT	1 cut(s)	398
BsuRI	GGCC	4 cut(s)	87, 226, 666, 677
BsuTUI	ATCGAT	1 cut(s)	398
BtgI	CCRYGG	1 cut(s)	574
BtsCI	GGATG	3 cut(s)	271, 562, 637
BtsIMutI	CAGTG	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	133
CaiI	CAGNNNCTG	1 cut(s)	649
CfoI	GCGC	1 cut(s)	369
Cfr10I	RCCGGY	2 cut(s)	68, 83
ClaI	ATCGAT	1 cut(s)	398
Csp6I	GTAC	1 cut(s)	510
CspAI	ACCGGT	1 cut(s)	68
CspCI	CAANNNNNGTGG	2 cut(s)	70, 105
CviAII	CATG	2 cut(s)	673, 732
CviQI	GTAC	1 cut(s)	510
DdeI	CTNAG	1 cut(s)	362
DpnI	GATC	2 cut(s)	397, 594
DpnII	GATC	2 cut(s)	395, 592
EaeI	YGGCCR	1 cut(s)	675
Eam1104I	CTCTTC	2 cut(s)	177, 679
EarI	CTCTTC	2 cut(s)	177, 679
Eco147I	AGGCCT	1 cut(s)	666
Eco88I	CYCGRG	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	642
EcoT22I	ATGCAT	1 cut(s)	657
Esp3I	CGTCTC	1 cut(s)	542
FaeI	CATG	2 cut(s)	676, 735
FaiI	YATR	9 cut(s)	12, 478, 488, 490, 508, 632, 662, 674, 733
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	2 cut(s)	672, 731
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	35, 62
FokI	GGATG	3 cut(s)	258, 569, 624
Fsp4HI	GCNGC	2 cut(s)	35, 62
FspBI	CTAG	4 cut(s)	197, 317, 392, 497
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	2 cut(s)	35, 62
GsuI	CTGGAG	1 cut(s)	572
HaeIII	GGCC	4 cut(s)	87, 226, 666, 677
HapII	CCGG	2 cut(s)	69, 84
HhaI	GCGC	1 cut(s)	369
Hin1II	CATG	2 cut(s)	676, 735
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	4 cut(s)	53, 185, 245, 308
HpaII	CCGG	2 cut(s)	69, 84
HphI	GGTGA	2 cut(s)	58, 245
Hpy166II	GTNNAC	2 cut(s)	46, 100
Hpy188I	TCNGA	3 cut(s)	172, 450, 706
Hpy188III	TCNNGA	2 cut(s)	266, 551
Hpy8I	GTNNAC	2 cut(s)	46, 100
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	8 cut(s)	120, 291, 331, 378, 480, 524, 611, 655
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 375, 617
HpyF3I	CTNAG	1 cut(s)	362
Hsp92II	CATG	2 cut(s)	676, 735
HspAI	GCGC	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	395, 592
LmnI	GCTCC	3 cut(s)	31, 646, 689
Lsp1109I	GCAGC	2 cut(s)	46, 48
LweI	GCATC	3 cut(s)	280, 642, 664
MaeI	CTAG	4 cut(s)	197, 317, 392, 497
MaeIII	GTNAC	3 cut(s)	71, 212, 355
MalI	GATC	2 cut(s)	397, 594
MboI	GATC	2 cut(s)	395, 592
MboII	GAAGA	3 cut(s)	194, 587, 696
MlsI	TGGCCA	1 cut(s)	677
MluCI	AATT	2 cut(s)	136, 430
MluNI	TGGCCA	1 cut(s)	677
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	2 cut(s)	277, 318
MnlI	CCTC	8 cut(s)	18, 104, 113, 291, 294, 547, 558, 680
Mox20I	TGGCCA	1 cut(s)	677
Mph1103I	ATGCAT	1 cut(s)	657
MscI	TGGCCA	1 cut(s)	677
MseI	TTAA	3 cut(s)	108, 381, 429
Msp20I	TGGCCA	1 cut(s)	677
MspI	CCGG	2 cut(s)	69, 84
MspR9I	CCNGG	1 cut(s)	644
MvaI	CCWGG	1 cut(s)	644
MwoI	GCNNNNNNNGC	3 cut(s)	160, 375, 617
NdeII	GATC	2 cut(s)	395, 592
NlaIII	CATG	2 cut(s)	676, 735
NlaIV	GGNNCC	2 cut(s)	6, 144
NmuCI	GTSAC	3 cut(s)	71, 212, 355
NsiI	ATGCAT	1 cut(s)	657
PceI	AGGCCT	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PfeI	GAWTC	3 cut(s)	53, 245, 308
PinAI	ACCGGT	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	36, 63
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PsiI	TTATAA	1 cut(s)	632
Psp6I	CCWGG	1 cut(s)	642
PspGI	CCWGG	1 cut(s)	642
PspN4I	GGNNCC	2 cut(s)	6, 144
PstNI	CAGNNNCTG	1 cut(s)	649
RsaI	GTAC	1 cut(s)	511
RsaNI	GTAC	1 cut(s)	510
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	3 cut(s)	108, 381, 429
SatI	GCNGC	2 cut(s)	35, 62
Sau3AI	GATC	2 cut(s)	395, 592
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	644
SetI	ASST	5 cut(s)	39, 105, 330, 460, 651
SfaNI	GCATC	3 cut(s)	280, 642, 664
Sse9I	AATT	2 cut(s)	136, 430
SseBI	AGGCCT	1 cut(s)	666
SspMI	CTAG	4 cut(s)	197, 317, 392, 497
StuI	AGGCCT	1 cut(s)	666
StyD4I	CCNGG	1 cut(s)	642
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	3 cut(s)	99, 398, 717
TasI	AATT	2 cut(s)	136, 430
TfiI	GAWTC	3 cut(s)	53, 245, 308
Tru1I	TTAA	3 cut(s)	108, 381, 429
Tru9I	TTAA	3 cut(s)	108, 381, 429
TscAI	CASTG	1 cut(s)	195
TseFI	GTSAC	3 cut(s)	71, 212, 355
TseI	GCWGC	2 cut(s)	34, 61
Tsp45I	GTSAC	3 cut(s)	71, 212, 355
TspDTI	ATGAA	1 cut(s)	321
TspGWI	ACGGA	2 cut(s)	46, 497
TspRI	CASTG	1 cut(s)	195
XcmI	CCANNNNNNNNNTGG	1 cut(s)	330
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	4 cut(s)	197, 317, 392, 497
Zsp2I	ATGCAT	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.