Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003846

Physical Location & Seq

Genomic Coordinates Reverse (-)

7247818 .. 7250360

Gene Structure 2543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06760.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGTTCCTCATACGATTGATTTGTTGAAGGAGCAGCTTCCGGTGCACCAAGAATCCCTGCTGCTCACCGGTCACACCACCACCGGCCTTGTCCTCGTCGACCTCGTTAATGGCTTCTGCACCGTTGGTGCTGGCAATTTGGCGCCAAGACAGCCTGATAAGCAAATATCTGAAATGGTGGAAGAGTCAGTGAGACTCGCCAGTGTTTTCTGTGACAAGAAATGGCCTGTCTTTGCTTTCCTTGATTCTCATCACCCTGACATTCCTGAGCATCCTTACCCTCCTCATTGCATTGTTGGAACTGATGAATCAAATCTAGTCCCAGACCTGCAATGGTTGGAGAACGAACCAAATGTGACACTTAGACGCAAAGATTGCATTAACGGGTTTCTAGGATCGATTGAGAAAGATGGCTCTAATCTGTTTGTTAATTGGATTCAAAGTAATCAGATAAAAGCTATCTTGGTTGTAGGAATATGCACGGATATATGTGTGCTAGACTTTGTATGTACCACTTTGTCTGCAAGAAATCATCGTCTCCTTGCCCCTCTGGAGGATGTCATTGTGTATTCCCGTGGTTGTGCCACTTTTGATCTTCCGGTTGAGATTGCAAAAAATGCCAAAGATGTTATAGCTCATCCCCAGGAGCTGATGCAGCACATAGGCCTTTACATGGCCAAAGGAAGAGGAGCGAAGTTAGTGTCAGAAGTGTCATTCGACACAAAAGAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006766 GO:0006767 GO:0006769 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008936 GO:0009056 GO:0009058 GO:0009108 GO:0009112 GO:0009117 GO:0009165 GO:0009719 GO:0009725 GO:0009737 GO:0009820 GO:0009987 GO:0010033 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019362 GO:0019363 GO:0019365 GO:0019438 GO:0019637 GO:0019860 GO:0033993 GO:0034641 GO:0034654 GO:0042221 GO:0042737 GO:0043094 GO:0043173 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044424 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072527 GO:0072529 GO:0090407 GO:0097305 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Isochorismatase

Protein Analysis

245

Amino Acids

27.05

Weight (kDa)

5.3

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22570 AT2G22570
fragaria_vesca	FvH4_1g19620 FvH4_1g19620
malus_domestica	MD01G1039800.v1.1 MD15G1312000.v1.1
prunus_persica	Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1
pyrus_communis	pycom01g06760 pycom15g27560
rosa_chinensis	RchiOBHm_Chr2g0111171 RchiOBHm_Chr6g0270861
rosa_laevigata	RLG00000013764 RLG00000017870
rosa_multiflora	Rmu_sc0010417.1_g000002 Rmu_sc0030113.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132660 Rroxscaffold_7G00197570
rosa_rugosa	Rorug02G0171200 Rorug06G0056900 Rorug06G0056900
rosa_samantha	Rh2AG224200 Rh2BG235900 Rh2CG227300 Rh2DG231900 Rh6AG176300 Rh6BG179700 Rh6CG175700 Rh6DG168000
rosa_wichuraiana	Rw2G017310 Rw6G015020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	336
AccB1I	GGYRCC	1 cut(s)	142
AccI	GTMKAC	1 cut(s)	99
AclWI	GGATC	1 cut(s)	403
AcoI	YGGCCR	1 cut(s)	675
AcyI	GRCGYC	1 cut(s)	143
AfaI	GTAC	1 cut(s)	511
AfiI	CCNNNNNNNGG	2 cut(s)	553, 673
AgeI	ACCGGT	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	28, 440
AjnI	CCWGG	1 cut(s)	642
AluBI	AGCT	4 cut(s)	37, 458, 635, 649
AluI	AGCT	4 cut(s)	37, 458, 635, 649
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	2 cut(s)	187, 542
Alw44I	GTGCAC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	403
AlwNI	CAGNNNCTG	1 cut(s)	649
AoxI	GGCC	4 cut(s)	85, 224, 664, 675
ApaLI	GTGCAC	1 cut(s)	44
ApeKI	GCWGC	3 cut(s)	34, 61, 655
ArsI	GACNNNNNNTTYG	2 cut(s)	686, 718
AsiGI	ACCGGT	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	145
AsuHPI	GGTGA	2 cut(s)	58, 245
BaeGI	GKGCMC	1 cut(s)	48
BalI	TGGCCA	1 cut(s)	677
BanI	GGYRCC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	3 cut(s)	46, 48, 667
BccI	CCATC	1 cut(s)	404
BciT130I	CCWGG	1 cut(s)	644
BcoDI	GTCTC	2 cut(s)	187, 542
BfaI	CTAG	3 cut(s)	317, 392, 497
BfoI	RGCGCY	1 cut(s)	146
BfuAI	ACCTGC	1 cut(s)	336
BisI	GCNGC	3 cut(s)	35, 62, 656
BlsI	GCNGC	3 cut(s)	36, 63, 657
Bme1390I	CCNGG	1 cut(s)	644
BmiI	GGNNCC	2 cut(s)	6, 144
BmrFI	CCNGG	1 cut(s)	644
BmsI	GCATC	2 cut(s)	280, 642
BpmI	CTGGAG	1 cut(s)	572
Bpu10I	CCTNAGC	1 cut(s)	267
Bsa29I	ATCGAT	1 cut(s)	398
BsaBI	GATNNNNATC	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	574, 642
BsaWI	WCCGGW	3 cut(s)	40, 68, 598
Bsc4I	CCNNNNNNNGG	2 cut(s)	553, 673
Bse118I	RCCGGY	2 cut(s)	68, 83
Bse1I	ACTGG	1 cut(s)	201
Bse3DI	GCAATG	2 cut(s)	286, 338
Bse8I	GATNNNNATC	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	644
BseCI	ATCGAT	1 cut(s)	398
BseDI	CCNNGG	2 cut(s)	574, 642
BseGI	GGATG	3 cut(s)	271, 562, 637
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	2 cut(s)	553, 673
BseMI	GCAATG	2 cut(s)	286, 338
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	201
BseRI	GAGGAG	2 cut(s)	273, 702
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	3 cut(s)	46, 48, 667
BsgI	GTGCAG	1 cut(s)	103
BshFI	GGCC	4 cut(s)	87, 226, 666, 677
BshNI	GGYRCC	1 cut(s)	142
BshTI	ACCGGT	1 cut(s)	68
BshVI	ATCGAT	1 cut(s)	398
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	4 cut(s)	41, 69, 84, 599
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	2 cut(s)	553, 673
BsmAI	GTCTC	2 cut(s)	187, 542
BsmBI	CGTCTC	1 cut(s)	542
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	4 cut(s)	87, 226, 666, 677
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	395, 592
BspANI	GGCC	4 cut(s)	87, 226, 666, 677
BspCNI	CTCAG	1 cut(s)	259
BspDI	ATCGAT	1 cut(s)	398
BspLI	GGNNCC	2 cut(s)	6, 144
BspMI	ACCTGC	1 cut(s)	336
BspPI	GGATC	1 cut(s)	403
BspT107I	GGYRCC	1 cut(s)	142
BsrDI	GCAATG	2 cut(s)	286, 338
BsrFI	RCCGGY	2 cut(s)	68, 83
BsrI	ACTGG	1 cut(s)	201
BssAI	RCCGGY	2 cut(s)	68, 83
BssECI	CCNNGG	2 cut(s)	574, 642
BssMI	GATC	2 cut(s)	395, 592
BssNI	GRCGYC	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	644
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	2 cut(s)	177, 679
BstACI	GRCGYC	1 cut(s)	143
BstAPI	GCANNNNNTGC	2 cut(s)	375, 617
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	2 cut(s)	267, 362
BstDSI	CCRYGG	1 cut(s)	574
BstF5I	GGATG	3 cut(s)	271, 562, 637
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	2 cut(s)	398, 595
BstMAI	GTCTC	2 cut(s)	187, 542
BstMBI	GATC	2 cut(s)	395, 592
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 151, 160, 375, 617, 655
BstNI	CCWGG	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	642
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	3 cut(s)	46, 48, 667
Bsu15I	ATCGAT	1 cut(s)	398
BsuRI	GGCC	4 cut(s)	87, 226, 666, 677
BsuTUI	ATCGAT	1 cut(s)	398
BtgI	CCRYGG	1 cut(s)	574
BtsCI	GGATG	3 cut(s)	271, 562, 637
BtsIMutI	CAGTG	2 cut(s)	195, 208
BveI	ACCTGC	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	133
CaiI	CAGNNNCTG	1 cut(s)	649
CfoI	GCGC	1 cut(s)	145
Cfr10I	RCCGGY	2 cut(s)	68, 83
ClaI	ATCGAT	1 cut(s)	398
CseI	GACGC	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	510
CspAI	ACCGGT	1 cut(s)	68
CspCI	CAANNNNNGTGG	2 cut(s)	70, 105
CviAII	CATG	2 cut(s)	673, 732
CviQI	GTAC	1 cut(s)	510
DdeI	CTNAG	2 cut(s)	267, 362
DinI	GGCGCC	1 cut(s)	144
DpnI	GATC	2 cut(s)	397, 594
DpnII	GATC	2 cut(s)	395, 592
EaeI	YGGCCR	1 cut(s)	675
Eam1104I	CTCTTC	2 cut(s)	177, 679
EarI	CTCTTC	2 cut(s)	177, 679
Eco147I	AGGCCT	1 cut(s)	666
EcoRII	CCWGG	1 cut(s)	642
EgeI	GGCGCC	1 cut(s)	144
EheI	GGCGCC	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	542
FaeI	CATG	2 cut(s)	676, 735
FaiI	YATR	9 cut(s)	12, 478, 488, 490, 508, 632, 662, 674, 733
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	2 cut(s)	672, 731
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	35, 62, 656
FokI	GGATG	3 cut(s)	258, 569, 624
Fsp4HI	GCNGC	3 cut(s)	35, 62, 656
FspBI	CTAG	3 cut(s)	317, 392, 497
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	3 cut(s)	35, 62, 656
GsuI	CTGGAG	1 cut(s)	572
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	4 cut(s)	87, 226, 666, 677
HapII	CCGG	4 cut(s)	41, 69, 84, 599
HgaI	GACGC	1 cut(s)	375
HhaI	GCGC	1 cut(s)	145
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	676, 735
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	6 cut(s)	53, 185, 195, 245, 308, 436
HpaII	CCGG	4 cut(s)	41, 69, 84, 599
HphI	GGTGA	2 cut(s)	58, 245
Hpy166II	GTNNAC	2 cut(s)	46, 100
Hpy188I	TCNGA	3 cut(s)	172, 450, 706
Hpy188III	TCNNGA	2 cut(s)	266, 551
Hpy8I	GTNNAC	2 cut(s)	46, 100
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	9 cut(s)	46, 120, 291, 331, 378, 480, 524, 611, 655
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 151, 160, 375, 617, 655
HpyF3I	CTNAG	2 cut(s)	267, 362
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	2 cut(s)	676, 735
HspAI	GCGC	1 cut(s)	143
KasI	GGCGCC	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	395, 592
LmnI	GCTCC	3 cut(s)	31, 646, 689
Lsp1109I	GCAGC	3 cut(s)	46, 48, 667
LweI	GCATC	2 cut(s)	280, 642
MaeI	CTAG	3 cut(s)	317, 392, 497
MaeIII	GTNAC	3 cut(s)	71, 212, 355
MalI	GATC	2 cut(s)	397, 594
MboI	GATC	2 cut(s)	395, 592
MboII	GAAGA	3 cut(s)	194, 587, 696
MhlI	GDGCHC	1 cut(s)	48
MlsI	TGGCCA	1 cut(s)	677
MluCI	AATT	2 cut(s)	136, 430
MluNI	TGGCCA	1 cut(s)	677
Mly113I	GGCGCC	1 cut(s)	143
MlyI	GAGTC	2 cut(s)	189, 194
MmeI	TCCRAC	2 cut(s)	277, 318
MnlI	CCTC	8 cut(s)	18, 104, 113, 291, 294, 547, 558, 680
Mox20I	TGGCCA	1 cut(s)	677
MscI	TGGCCA	1 cut(s)	677
MseI	TTAA	3 cut(s)	108, 381, 429
Msp20I	TGGCCA	1 cut(s)	677
MspI	CCGG	4 cut(s)	41, 69, 84, 599
MspR9I	CCNGG	1 cut(s)	644
MvaI	CCWGG	1 cut(s)	644
MwoI	GCNNNNNNNGC	6 cut(s)	43, 151, 160, 375, 617, 655
NarI	GGCGCC	1 cut(s)	143
NdeII	GATC	2 cut(s)	395, 592
NlaIII	CATG	2 cut(s)	676, 735
NlaIV	GGNNCC	2 cut(s)	6, 144
NmuCI	GTSAC	3 cut(s)	71, 212, 355
PceI	AGGCCT	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PfeI	GAWTC	4 cut(s)	53, 245, 308, 436
PinAI	ACCGGT	1 cut(s)	68
PkrI	GCNGC	3 cut(s)	36, 63, 657
PleI	GAGTC	2 cut(s)	189, 193
PluTI	GGCGCC	1 cut(s)	146
PpsI	GAGTC	2 cut(s)	189, 193
Psp6I	CCWGG	1 cut(s)	642
PspGI	CCWGG	1 cut(s)	642
PspN4I	GGNNCC	2 cut(s)	6, 144
PstNI	CAGNNNCTG	1 cut(s)	649
RsaI	GTAC	1 cut(s)	511
RsaNI	GTAC	1 cut(s)	510
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	3 cut(s)	108, 381, 429
SatI	GCNGC	3 cut(s)	35, 62, 656
Sau3AI	GATC	2 cut(s)	395, 592
SchI	GAGTC	2 cut(s)	189, 194
ScrFI	CCNGG	1 cut(s)	644
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	6 cut(s)	39, 105, 330, 460, 637, 651
SfaNI	GCATC	2 cut(s)	280, 642
SfoI	GGCGCC	1 cut(s)	144
Sse9I	AATT	2 cut(s)	136, 430
SseBI	AGGCCT	1 cut(s)	666
SspDI	GGCGCC	1 cut(s)	142
SspMI	CTAG	3 cut(s)	317, 392, 497
StuI	AGGCCT	1 cut(s)	666
StyD4I	CCNGG	1 cut(s)	642
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	3 cut(s)	99, 398, 717
TasI	AATT	2 cut(s)	136, 430
TfiI	GAWTC	4 cut(s)	53, 245, 308, 436
Tru1I	TTAA	3 cut(s)	108, 381, 429
Tru9I	TTAA	3 cut(s)	108, 381, 429
TscAI	CASTG	2 cut(s)	195, 208
TseFI	GTSAC	3 cut(s)	71, 212, 355
TseI	GCWGC	3 cut(s)	34, 61, 655
Tsp45I	GTSAC	3 cut(s)	71, 212, 355
TspDTI	ATGAA	1 cut(s)	321
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	2 cut(s)	195, 208
VneI	GTGCAC	1 cut(s)	44
XcmI	CCANNNNNNNNNTGG	1 cut(s)	330
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	3 cut(s)	317, 392, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.