Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010417.1

Orthogroup ID

OG0003846

Physical Location & Seq

Genomic Coordinates Reverse (-)

1744 .. 3116

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010417.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgattagtgagtcagcaagacttgccagacacttttgtgaaaagaaatggccagttttggcattcattgattctcatcaacctgaaaagctggaagacccttatccccttcattgtatcgagggcactgatgaatcaaacttggtccctgcattaagttggttggagaaagaaccaaatgtcacaatcaggcgcaaagattgctacgatggattcgtaggctcaattcaacctgatggttcaaatgcttttgttgattgggtgaagaaaaatcagatcagaactttattagtggtaggaatatgcacggacatctgtgttctggactttgtttgttccacaatatcagctagaaaccgtggtttcctgacccctttggtggacgtagtggtttactcgcgtgcctgcgccacatttaatgttcctcttcaggttgccagaaacaccaaaggagctttagctcaccctcaggaactgatgcatcatataggactctacatggcaaaggaaagaggagccaaaatagcaaatcaagtgtcatgggttggagctaaagagctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0017144 GO:0019860 GO:0034641 GO:0042737 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Isochorismatase

Protein Analysis

187

Amino Acids

20.94

Weight (kDa)

6.99

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22570 AT2G22570
fragaria_vesca	FvH4_1g19620 FvH4_1g19620
malus_domestica	MD01G1039800.v1.1 MD15G1312000.v1.1
prunus_persica	Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1
pyrus_communis	pycom01g06760 pycom15g27560
rosa_chinensis	RchiOBHm_Chr2g0111171 RchiOBHm_Chr6g0270861
rosa_laevigata	RLG00000013764 RLG00000017870
rosa_multiflora	Rmu_sc0010417.1_g000002 Rmu_sc0030113.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132660 Rroxscaffold_7G00197570
rosa_rugosa	Rorug02G0171200 Rorug06G0056900 Rorug06G0056900
rosa_samantha	Rh2AG224200 Rh2BG235900 Rh2CG227300 Rh2DG231900 Rh6AG176300 Rh6BG179700 Rh6CG175700 Rh6DG168000
rosa_wichuraiana	Rw2G017310 Rw6G015020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	400
AcoI	YGGCCR	1 cut(s)	50
AcuI	CTGAAG	1 cut(s)	413
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	230, 243
AleI	CACNNNNGTG	1 cut(s)	36
AluBI	AGCT	6 cut(s)	91, 350, 455, 461, 551, 559
AluI	AGCT	6 cut(s)	91, 350, 455, 461, 551, 559
AlwNI	CAGNNNCTG	1 cut(s)	475
AoxI	GGCC	1 cut(s)	50
ArsI	GACNNNNNNTTYG	2 cut(s)	521, 553
AspLEI	GCGC	2 cut(s)	195, 410
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	2 cut(s)	274, 455
AvaII	GGWCC	1 cut(s)	145
AxyI	CCTNAGG	1 cut(s)	468
BaeGI	GKGCMC	1 cut(s)	128
BalI	TGGCCA	1 cut(s)	52
BbsI	GAAGAC	1 cut(s)	102
BccI	CCATC	2 cut(s)	203, 230
BfaI	CTAG	1 cut(s)	351
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	2 cut(s)	147, 517
BmsI	GCATC	2 cut(s)	468, 490
BpiI	GAAGAC	1 cut(s)	102
BsaBI	GATNNNNATC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse1I	ACTGG	1 cut(s)	53
Bse21I	CCTNAGG	1 cut(s)	468
Bse8I	GATNNNNATC	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	358
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMII	CTCAG	1 cut(s)	482
BseNI	ACTGG	1 cut(s)	53
BseRI	GAGGAG	1 cut(s)	528
BseSI	GKGCMC	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	400
BshFI	GGCC	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmFI	GGGAC	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	1 cut(s)	276
BspANI	GGCC	1 cut(s)	52
BspCNI	CTCAG	1 cut(s)	481
BspFNI	CGCG	1 cut(s)	400
BspLI	GGNNCC	2 cut(s)	147, 517
BsrI	ACTGG	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	358
BssMI	GATC	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	1 cut(s)	432
BstAPI	GCANNNNNTGC	2 cut(s)	23, 201
BstC8I	GCNNGC	2 cut(s)	402, 406
BstDEI	CTNAG	1 cut(s)	468
BstDSI	CCRYGG	1 cut(s)	358
BstFNI	CGCG	1 cut(s)	400
BstHHI	GCGC	2 cut(s)	195, 410
BstKTI	GATC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 201, 524
BstSLI	GKGCMC	1 cut(s)	128
BstUI	CGCG	1 cut(s)	400
BstV2I	GAAGAC	1 cut(s)	102
Bsu36I	CCTNAGG	1 cut(s)	468
BsuRI	GGCC	1 cut(s)	52
BtgI	CCRYGG	1 cut(s)	358
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	2 cut(s)	402, 406
CaiI	CAGNNNCTG	1 cut(s)	475
CfoI	GCGC	2 cut(s)	195, 410
Cfr13I	GGNCC	1 cut(s)	145
CviAII	CATG	2 cut(s)	499, 540
CviJI	RGCY	9 cut(s)	52, 91, 222, 350, 455, 461, 518, 551, 559
CviKI_1	RGCY	9 cut(s)	52, 91, 222, 350, 455, 461, 518, 551, 559
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
EaeI	YGGCCR	1 cut(s)	50
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	413
Eco81I	CCTNAGG	1 cut(s)	468
EcoT22I	ATGCAT	1 cut(s)	483
FaeI	CATG	2 cut(s)	502, 543
FaiI	YATR	6 cut(s)	304, 486, 488, 500, 541, 562
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	2 cut(s)	498, 539
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	2 cut(s)	194, 409
HaeIII	GGCC	1 cut(s)	52
HhaI	GCGC	2 cut(s)	195, 410
Hin1II	CATG	2 cut(s)	502, 543
Hin6I	GCGC	2 cut(s)	193, 408
HinP1I	GCGC	2 cut(s)	193, 408
HinfI	GANTC	5 cut(s)	11, 71, 134, 213, 492
HphI	GGTGA	2 cut(s)	274, 455
Hpy166II	GTNNAC	2 cut(s)	382, 394
Hpy188I	TCNGA	2 cut(s)	276, 281
Hpy188III	TCNNGA	3 cut(s)	323, 367, 470
Hpy8I	GTNNAC	2 cut(s)	382, 394
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	3 cut(s)	152, 306, 481
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 201, 524
HpyF3I	CTNAG	1 cut(s)	468
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	2 cut(s)	502, 543
HspAI	GCGC	2 cut(s)	193, 408
Kzo9I	GATC	1 cut(s)	276
LmnI	GCTCC	3 cut(s)	452, 515, 548
LweI	GCATC	2 cut(s)	468, 490
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	3 cut(s)	107, 277, 419
MhlI	GDGCHC	1 cut(s)	128
MlsI	TGGCCA	1 cut(s)	52
MluCI	AATT	1 cut(s)	225
MluNI	TGGCCA	1 cut(s)	52
MlyI	GAGTC	2 cut(s)	20, 486
MmeI	TCCRAC	2 cut(s)	144, 526
MnlI	CCTC	4 cut(s)	115, 435, 477, 506
Mox20I	TGGCCA	1 cut(s)	52
Mph1103I	ATGCAT	1 cut(s)	483
MscI	TGGCCA	1 cut(s)	52
MseI	TTAA	2 cut(s)	155, 417
MslI	CAYNNNNRTG	1 cut(s)	36
Msp20I	TGGCCA	1 cut(s)	52
Mva1269I	GAATGC	1 cut(s)	62
MvnI	CGCG	1 cut(s)	400
MwoI	GCNNNNNNNGC	3 cut(s)	23, 201, 524
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	2 cut(s)	502, 543
NlaIV	GGNNCC	2 cut(s)	147, 517
NmuCI	GTSAC	1 cut(s)	181
NsiI	ATGCAT	1 cut(s)	483
OliI	CACNNNNGTG	1 cut(s)	36
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PctI	GAATGC	1 cut(s)	62
PfeI	GAWTC	3 cut(s)	71, 134, 213
PleI	GAGTC	2 cut(s)	19, 486
PpsI	GAGTC	2 cut(s)	19, 486
PspN4I	GGNNCC	2 cut(s)	147, 517
PspPI	GGNCC	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	475
RseI	CAYNNNNRTG	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	155, 417
Sau3AI	GATC	1 cut(s)	276
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	2 cut(s)	20, 486
SduI	GDGCHC	1 cut(s)	128
SfaNI	GCATC	2 cut(s)	468, 490
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	36
Sse9I	AATT	1 cut(s)	225
SspMI	CTAG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	359
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	1 cut(s)	120
TasI	AATT	1 cut(s)	225
TfiI	GAWTC	3 cut(s)	71, 134, 213
Tru1I	TTAA	2 cut(s)	155, 417
Tru9I	TTAA	2 cut(s)	155, 417
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	3 cut(s)	55, 101, 147
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	145
XspI	CTAG	1 cut(s)	351
Zsp2I	ATGCAT	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.