Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003846

Physical Location & Seq

Genomic Coordinates Forward (+)

11847689 .. 11849893

Gene Structure 2205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g19620.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGTGCCACGTACAGTTGATTTGTTAAAGGAGCAGATACCGGTGCACCAGGAATCTATACATGTCACCGGCGACGTCAAGACCGGCCTTGTCCTCGTCGACGTCATTAACGGCTTCTGCACCGTCGGCGCTGGCAATTTGGCTCCAAGGCAACCGAACAAGCAAATCTCGGAAATGGTGAAGGAGGCGGTGAGACTTGCCGGAGTTTTCTGTGAGAAGAAATGGCCTGTTCTCGGCTTTCTTGATTCTCATCACCCTGATATCCCTGAGTATCCTTATCCTCCTCATTGCATTGCTGGCACTGATGAATCAAAGCTGGTTCCAGATCTGCAATGGTTGGAGAATGAACCTAATGTGACACTGAAATGTAAAGATTGCATTGATGGGTTTCTTGGTTCGATTGAGAAAGACGGTTCTAATGTGTTTGTGAATTGGATTAAGAGCAATCAGATCAAGACTATCTTGGTGCTAGGGATATGCACAGATATATGTGTGCTGGATTTTGTATGTACCACTTTATCTGCCAGAAATCGTCGTTTTCTTGAACCTCTGGAGGATGTGATAGTGTATTCCCGTGGTTGTGCCACTTTTGATCTTCCGGTTGATGTGGTCAAATCTATGAAAGATGTTGCAGCACATCCGCAGGATCTAATGCATCACATAGGCCTTTACATAGCCAAAGGAAGGGGAGCAAAGGTCGTGTCAGAAGTGTCATTTTGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006766 GO:0006767 GO:0006769 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008936 GO:0009056 GO:0009058 GO:0009108 GO:0009112 GO:0009117 GO:0009165 GO:0009719 GO:0009725 GO:0009737 GO:0009820 GO:0009987 GO:0010033 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019362 GO:0019363 GO:0019365 GO:0019438 GO:0019637 GO:0019860 GO:0033993 GO:0034641 GO:0034654 GO:0042221 GO:0042737 GO:0043094 GO:0043173 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044424 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072527 GO:0072529 GO:0090407 GO:0097305 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Isochorismatase

Protein Analysis

242

Amino Acids

26.65

Weight (kDa)

5.74

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Isochorismatase	PF00857	1 - 140	6e-15	Isochorismatase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22570 AT2G22570
fragaria_vesca	FvH4_1g19620 FvH4_1g19620
malus_domestica	MD01G1039800.v1.1 MD15G1312000.v1.1
prunus_persica	Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1
pyrus_communis	pycom01g06760 pycom15g27560
rosa_chinensis	RchiOBHm_Chr2g0111171 RchiOBHm_Chr6g0270861
rosa_laevigata	RLG00000013764 RLG00000017870
rosa_multiflora	Rmu_sc0010417.1_g000002 Rmu_sc0030113.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132660 Rroxscaffold_7G00197570
rosa_rugosa	Rorug02G0171200 Rorug06G0056900 Rorug06G0056900
rosa_samantha	Rh2AG224200 Rh2BG235900 Rh2CG227300 Rh2DG231900 Rh6AG176300 Rh6BG179700 Rh6CG175700 Rh6DG168000
rosa_wichuraiana	Rw2G017310 Rw6G015020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	78, 105
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	2 cut(s)	188, 641
AclWI	GGATC	1 cut(s)	654
AcyI	GRCGYC	2 cut(s)	75, 102
AfaI	GTAC	3 cut(s)	13, 511, 721
AfiI	CCNNNNNNNGG	2 cut(s)	233, 684
AflIII	ACRYGT	1 cut(s)	61
AgeI	ACCGGT	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	545
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	1 cut(s)	316
AluI	AGCT	1 cut(s)	316
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	187
Alw44I	GTGCAC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	654
AoxI	GGCC	3 cut(s)	85, 224, 664
ApaLI	GTGCAC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	632
ArsI	GACNNNNNNTTYG	2 cut(s)	686, 718
AsiGI	ACCGGT	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	131
AsuHPI	GGTGA	4 cut(s)	58, 190, 202, 245
BaeGI	GKGCMC	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	644
BccI	CCATC	1 cut(s)	377
BceAI	ACGGC	1 cut(s)	127
BciT130I	CCWGG	1 cut(s)	50
BciVI	GTATCC	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	470
BfoI	RGCGCY	1 cut(s)	132
BfuI	GTATCC	1 cut(s)	282
BglII	AGATCT	1 cut(s)	325
BisI	GCNGC	1 cut(s)	633
BlsI	GCNGC	1 cut(s)	634
Bme1390I	CCNGG	1 cut(s)	50
BmiI	GGNNCC	3 cut(s)	6, 144, 321
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	1 cut(s)	664
BpmI	CTGGAG	1 cut(s)	572
BsaAI	YACGTR	1 cut(s)	11
BsaBI	GATNNNNATC	1 cut(s)	249
BsaHI	GRCGYC	2 cut(s)	75, 102
BsaJI	CCNNGG	2 cut(s)	146, 574
BsaWI	WCCGGW	2 cut(s)	40, 598
BsaXI	ACNNNNNCTCC	2 cut(s)	681, 711
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 684
Bse118I	RCCGGY	3 cut(s)	40, 68, 83
Bse3DI	GCAATG	3 cut(s)	286, 291, 338
Bse8I	GATNNNNATC	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	146, 574
BseGI	GGATG	2 cut(s)	562, 637
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	2 cut(s)	233, 684
BseMI	GCAATG	3 cut(s)	286, 291, 338
BseMII	CTCAG	1 cut(s)	258
BseRI	GAGGAG	1 cut(s)	273
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	644
BsgI	GTGCAG	1 cut(s)	103
BshFI	GGCC	3 cut(s)	87, 226, 666
BshNI	GGYRCC	1 cut(s)	4
BshTI	ACCGGT	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	5 cut(s)	41, 69, 84, 201, 599
BslI	CCNNNNNNNGG	2 cut(s)	233, 684
BsmAI	GTCTC	1 cut(s)	187
BsnI	GGCC	3 cut(s)	87, 226, 666
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp1407I	TGTACA	1 cut(s)	719
Bsp143I	GATC	4 cut(s)	325, 450, 592, 646
BspACI	CCGC	2 cut(s)	188, 641
BspANI	GGCC	3 cut(s)	87, 226, 666
BspCNI	CTCAG	1 cut(s)	259
BspLI	GGNNCC	3 cut(s)	6, 144, 321
BspPI	GGATC	1 cut(s)	654
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	3 cut(s)	286, 291, 338
BsrFI	RCCGGY	3 cut(s)	40, 68, 83
BsrGI	TGTACA	1 cut(s)	719
BssAI	RCCGGY	3 cut(s)	40, 68, 83
BssECI	CCNNGG	2 cut(s)	146, 574
BssMI	GATC	4 cut(s)	325, 450, 592, 646
BssNI	GRCGYC	2 cut(s)	75, 102
BssT1I	CCWWGG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	3 cut(s)	16, 124, 413
BstACI	GRCGYC	2 cut(s)	75, 102
BstAUI	TGTACA	1 cut(s)	719
BstBAI	YACGTR	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	133, 298
BstDEI	CTNAG	1 cut(s)	267
BstDSI	CCRYGG	1 cut(s)	574
BstF5I	GGATG	2 cut(s)	562, 637
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	4 cut(s)	328, 453, 595, 649
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	4 cut(s)	325, 450, 592, 646
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 297
BstNI	CCWGG	1 cut(s)	50
BstNSI	RCATGY	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	48
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	644
BstX2I	RGATCY	2 cut(s)	325, 646
BstYI	RGATCY	2 cut(s)	325, 646
BsuI	GTATCC	1 cut(s)	282
BsuRI	GGCC	3 cut(s)	87, 226, 666
BtgI	CCRYGG	1 cut(s)	574
BtsCI	GGATG	2 cut(s)	562, 637
BtsIMutI	CAGTG	2 cut(s)	300, 359
Cac8I	GCNNGC	2 cut(s)	133, 298
CfoI	GCGC	1 cut(s)	131
Cfr10I	RCCGGY	3 cut(s)	40, 68, 83
Csp6I	GTAC	3 cut(s)	12, 510, 720
CspAI	ACCGGT	1 cut(s)	40
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	8 cut(s)	87, 114, 143, 226, 237, 316, 666, 677
CviKI_1	RGCY	8 cut(s)	87, 114, 143, 226, 237, 316, 666, 677
CviQI	GTAC	3 cut(s)	12, 510, 720
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	4 cut(s)	327, 452, 594, 648
DpnII	GATC	4 cut(s)	325, 450, 592, 646
Eco130I	CCWWGG	1 cut(s)	146
Eco147I	AGGCCT	1 cut(s)	666
Eco32I	GATATC	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	48
EcoRV	GATATC	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	146
EcoT22I	ATGCAT	1 cut(s)	657
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	1 cut(s)	65
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FatI	CATG	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	633
FokI	GGATG	2 cut(s)	569, 624
Fsp4HI	GCNGC	1 cut(s)	633
FspBI	CTAG	1 cut(s)	470
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	1 cut(s)	633
GsuI	CTGGAG	1 cut(s)	572
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	3 cut(s)	87, 226, 666
HapII	CCGG	5 cut(s)	41, 69, 84, 201, 599
HhaI	GCGC	1 cut(s)	131
Hin1I	GRCGYC	2 cut(s)	75, 102
Hin1II	CATG	1 cut(s)	65
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	3 cut(s)	53, 245, 308
HpaII	CCGG	5 cut(s)	41, 69, 84, 201, 599
HphI	GGTGA	4 cut(s)	58, 190, 202, 245
Hpy166II	GTNNAC	2 cut(s)	46, 100
Hpy188I	TCNGA	3 cut(s)	172, 450, 706
Hpy188III	TCNNGA	6 cut(s)	79, 242, 323, 454, 542, 551
Hpy8I	GTNNAC	2 cut(s)	46, 100
Hpy99I	CGWCG	5 cut(s)	77, 101, 104, 128, 537
HpyAV	CCTTC	2 cut(s)	175, 678
HpyCH4III	ACNGT	3 cut(s)	16, 124, 413
HpyCH4IV	ACGT	3 cut(s)	10, 75, 102
HpyCH4V	TGCA	8 cut(s)	46, 120, 291, 331, 378, 480, 632, 655
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 297
HpyF3I	CTNAG	1 cut(s)	267
HpySE526I	ACGT	3 cut(s)	10, 75, 102
Hsp92I	GRCGYC	2 cut(s)	75, 102
Hsp92II	CATG	1 cut(s)	65
HspAI	GCGC	1 cut(s)	129
Kzo9I	GATC	4 cut(s)	325, 450, 592, 646
LmnI	GCTCC	3 cut(s)	31, 148, 689
Lsp1109I	GCAGC	1 cut(s)	644
LweI	GCATC	1 cut(s)	664
MaeI	CTAG	1 cut(s)	470
MaeII	ACGT	3 cut(s)	10, 75, 102
MaeIII	GTNAC	2 cut(s)	64, 355
MalI	GATC	4 cut(s)	327, 452, 594, 648
MboI	GATC	4 cut(s)	325, 450, 592, 646
MboII	GAAGA	2 cut(s)	229, 587
MflI	RGATCY	2 cut(s)	325, 646
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	2 cut(s)	136, 430
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	6 cut(s)	104, 178, 291, 294, 547, 558
Mph1103I	ATGCAT	1 cut(s)	657
MseI	TTAA	3 cut(s)	26, 108, 438
MslI	CAYNNNNRTG	1 cut(s)	364
MspI	CCGG	5 cut(s)	41, 69, 84, 201, 599
MspR9I	CCNGG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	126, 297
NdeII	GATC	4 cut(s)	325, 450, 592, 646
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	3 cut(s)	6, 144, 321
NmeAIII	GCCGAG	1 cut(s)	213
NmuCI	GTSAC	2 cut(s)	64, 355
NsiI	ATGCAT	1 cut(s)	657
NspI	RCATGY	1 cut(s)	65
PceI	AGGCCT	1 cut(s)	666
PciI	ACATGT	1 cut(s)	61
PfeI	GAWTC	3 cut(s)	53, 245, 308
PinAI	ACCGGT	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	634
Ppu21I	YACGTR	1 cut(s)	11
PscI	ACATGT	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	3 cut(s)	6, 144, 321
PsuI	RGATCY	2 cut(s)	325, 646
RsaI	GTAC	3 cut(s)	13, 511, 721
RsaNI	GTAC	3 cut(s)	12, 510, 720
RseI	CAYNNNNRTG	1 cut(s)	364
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	3 cut(s)	26, 108, 438
SatI	GCNGC	1 cut(s)	633
Sau3AI	GATC	4 cut(s)	325, 450, 592, 646
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	7 cut(s)	13, 78, 105, 318, 352, 550, 699
SfaNI	GCATC	1 cut(s)	664
SgrAI	CRCCGGYG	1 cut(s)	68
SgrDI	CGTCGACG	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	364
Sse9I	AATT	2 cut(s)	136, 430
SseBI	AGGCCT	1 cut(s)	666
SsiI	CCGC	2 cut(s)	188, 641
SspMI	CTAG	1 cut(s)	470
StuI	AGGCCT	1 cut(s)	666
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	3 cut(s)	16, 124, 413
TaiI	ACGT	3 cut(s)	13, 78, 105
TaqI	TCGA	2 cut(s)	99, 398
TasI	AATT	2 cut(s)	136, 430
TatI	WGTACW	1 cut(s)	719
TfiI	GAWTC	3 cut(s)	53, 245, 308
Tru1I	TTAA	3 cut(s)	26, 108, 438
Tru9I	TTAA	3 cut(s)	26, 108, 438
TscAI	CASTG	2 cut(s)	307, 366
TseFI	GTSAC	2 cut(s)	64, 355
TseI	GCWGC	1 cut(s)	632
Tsp45I	GTSAC	2 cut(s)	64, 355
TspDTI	ATGAA	3 cut(s)	321, 360, 635
TspRI	CASTG	2 cut(s)	307, 366
VneI	GTGCAC	1 cut(s)	44
XceI	RCATGY	1 cut(s)	65
XcmI	CCANNNNNNNNNTGG	1 cut(s)	330
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	1 cut(s)	470
ZraI	GACGTC	2 cut(s)	76, 103
Zsp2I	ATGCAT	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.