Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003846

Physical Location & Seq

Genomic Coordinates Reverse (-)

15489551 .. 15490159

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0171200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCCAAGCAGATTAGGTTGTTCACCACAACTACTACTTGTACTTTGCTCATCGTTTTGATATGTTGCCACGAAATCGCGCAAGTCGATGGAAGGCATTTGAAGTCTGGGCACTGCAAGAAATGCTCGAGGCTGCATCGTGAGATCAACACTTTGACTGCATCAAAGGTTGGTGACCACAATCGTAGTGCTGGTTTGGTCCGAGCAGCTGAAACAAAGACGAGCAATAAGGTAGAACATGTTACTGATGATTTTCGCCCTACTGCTCCGGGTCACAGTCCTGGTGTTGGTCACTCCATCAACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006766 GO:0006767 GO:0006769 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008936 GO:0009056 GO:0009058 GO:0009108 GO:0009112 GO:0009117 GO:0009165 GO:0009719 GO:0009725 GO:0009737 GO:0009820 GO:0009987 GO:0010033 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019362 GO:0019363 GO:0019365 GO:0019438 GO:0019637 GO:0019860 GO:0033993 GO:0034641 GO:0034654 GO:0042221 GO:0042737 GO:0043094 GO:0043173 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044424 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072527 GO:0072529 GO:0090407 GO:0097305 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Isochorismatase

Protein Analysis

102

Amino Acids

11.14

Weight (kDa)

9.4

Isoelectric Point (pI)

34.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22570 AT2G22570
fragaria_vesca	FvH4_1g19620 FvH4_1g19620
malus_domestica	MD01G1039800.v1.1 MD15G1312000.v1.1
prunus_persica	Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1
pyrus_communis	pycom01g06760 pycom15g27560
rosa_chinensis	RchiOBHm_Chr2g0111171 RchiOBHm_Chr6g0270861
rosa_laevigata	RLG00000013764 RLG00000017870
rosa_multiflora	Rmu_sc0010417.1_g000002 Rmu_sc0030113.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132660 Rroxscaffold_7G00197570
rosa_rugosa	Rorug02G0171200 Rorug06G0056900 Rorug06G0056900
rosa_samantha	Rh2AG224200 Rh2BG235900 Rh2CG227300 Rh2DG231900 Rh6AG176300 Rh6BG179700 Rh6CG175700 Rh6DG168000
rosa_wichuraiana	Rw2G017310 Rw6G015020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	80
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	287
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	1 cut(s)	209
AluI	AGCT	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	127
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	133, 206
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	199
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	2 cut(s)	16, 185
AvaI	CYCGRG	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	114
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	2 cut(s)	120, 218
BccI	CCATC	2 cut(s)	83, 305
BciT130I	CCWGG	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	270
BisI	GCNGC	2 cut(s)	134, 207
BlsI	GCNGC	2 cut(s)	135, 208
Bme1390I	CCNGG	2 cut(s)	270, 282
Bme18I	GGWCC	1 cut(s)	199
BmeT110I	CYCGRG	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	199
BmrFI	CCNGG	2 cut(s)	270, 282
BmsI	GCATC	2 cut(s)	145, 170
BpuMI	CCSGG	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	114
BseXI	GCAGC	2 cut(s)	120, 218
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	287
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	144
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	80
BssMI	GATC	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	278
BstAPI	GCANNNNNTGC	1 cut(s)	123
BstEII	GGTNACC	1 cut(s)	173
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	1 cut(s)	147
BstMBI	GATC	1 cut(s)	144
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	1 cut(s)	242
BstPI	GGTNACC	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	268, 280
BstSLI	GKGCMC	1 cut(s)	114
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	2 cut(s)	120, 218
BsuRI	GGCC	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	112
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	42
CviAII	CATG	1 cut(s)	239
CviJI	RGCY	3 cut(s)	5, 133, 209
CviKI_1	RGCY	3 cut(s)	5, 133, 209
CviQI	GTAC	1 cut(s)	42
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	127
Eco91I	GGTNACC	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	280
FaeI	CATG	1 cut(s)	242
FaiI	YATR	2 cut(s)	64, 240
FatI	CATG	1 cut(s)	238
Fnu4HI	GCNGC	2 cut(s)	134, 207
Fsp4HI	GCNGC	2 cut(s)	134, 207
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	2 cut(s)	134, 207
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	269
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	1 cut(s)	242
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	2 cut(s)	16, 185
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	1 cut(s)	24
HpyAV	CCTTC	1 cut(s)	87
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	3 cut(s)	117, 136, 161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	242
HspAI	GCGC	1 cut(s)	80
Kzo9I	GATC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	5 cut(s)	93, 177, 267, 282, 294
Lsp1109I	GCAGC	2 cut(s)	120, 218
LweI	GCATC	2 cut(s)	145, 170
MaeIII	GTNAC	4 cut(s)	173, 241, 272, 290
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MfeI	CAATTG	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	114
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	304
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	1 cut(s)	123
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	2 cut(s)	270, 282
MunI	CAATTG	1 cut(s)	304
MvaI	CCWGG	1 cut(s)	282
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	123
NciI	CCSGG	1 cut(s)	270
NdeII	GATC	1 cut(s)	144
NlaIII	CATG	1 cut(s)	242
NmuCI	GTSAC	3 cut(s)	173, 272, 290
NspI	RCATGY	1 cut(s)	242
PaeR7I	CTCGAG	1 cut(s)	127
PciI	ACATGT	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PkrI	GCNGC	2 cut(s)	135, 208
PscI	ACATGT	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	280
PspEI	GGTNACC	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	199
PspXI	VCTCGAGB	1 cut(s)	127
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
SatI	GCNGC	2 cut(s)	134, 207
Sau3AI	GATC	1 cut(s)	144
Sau96I	GGNCC	1 cut(s)	199
ScrFI	CCNGG	2 cut(s)	270, 282
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	4 cut(s)	20, 171, 211, 234
SfaNI	GCATC	2 cut(s)	145, 170
Sfr274I	CTCGAG	1 cut(s)	127
SinI	GGWCC	1 cut(s)	199
SlaI	CTCGAG	1 cut(s)	127
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	1 cut(s)	304
StyD4I	CCNGG	2 cut(s)	268, 280
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	2 cut(s)	87, 128
TasI	AATT	1 cut(s)	304
TatI	WGTACW	1 cut(s)	41
TscAI	CASTG	1 cut(s)	119
TseFI	GTSAC	3 cut(s)	173, 272, 290
TseI	GCWGC	2 cut(s)	133, 206
Tsp45I	GTSAC	3 cut(s)	173, 272, 290
TspRI	CASTG	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	199
XceI	RCATGY	1 cut(s)	242
XhoI	CTCGAG	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.