Rh6AG176300

atnic1,nic1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003846
Physical Location & Seq
Forward (+)
28605900 .. 28606507
608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG176300.1

Sequence Viewer

Length: 342 bp
ATGGTGTCTCAGACAATTGATCTTTTGAAGAATGAAATTCCTCTGGACCAGGAACCTGTGGATCTGTCAGAGGATGTTGTCACTGGACTTGTTCTAGTGGACATAATCAATGGCTTCTGTACTGTTGGTGCTGGAAATCTGGCTCCGAGAGAACCCGATAGGCAGATCTCGGAGATGATTAGTGAGTCAGCAAGACTTGCCAGACACTTTTGTGAAAAGAAATGGCCAGTTTTGGCATTCATTGATTCTCATCAACCTGAAAAGCTGGAAGACCCTTATCCCCTTCATTGTATCGAGGGCACTGATGAATCAAACTTGGTCCCTGGTAGGCTAGGCTGGTAG

Protein Analysis

113

Amino Acids

12.61

Weight (kDa)

4.46

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Isochorismatase PF00857 29 - 108 3.7e-07 Isochorismatase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 69
AcoI YGGCCR 1 cut(s) 224
AcsI RAATTY 1 cut(s) 36
AfaI GTAC 1 cut(s) 121
AgsI TTSAA 1 cut(s) 28
AjnI CCWGG 2 cut(s) 48, 322
AleI CACNNNNGTG 1 cut(s) 210
AluBI AGCT 1 cut(s) 265
AluI AGCT 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 12
AlwI GGATC 1 cut(s) 69
AoxI GGCC 1 cut(s) 224
ApoI RAATTY 1 cut(s) 36
AspS9I GGNCC 2 cut(s) 46, 319
AvaII GGWCC 2 cut(s) 46, 319
BaeGI GKGCMC 1 cut(s) 302
BalI TGGCCA 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 276
BciT130I CCWGG 2 cut(s) 50, 324
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 2 cut(s) 95, 332
BglII AGATCT 1 cut(s) 165
Bme1390I CCNGG 2 cut(s) 50, 324
Bme18I GGWCC 2 cut(s) 46, 319
BmgT120I GGNCC 2 cut(s) 46, 319
BmiI GGNNCC 3 cut(s) 54, 144, 321
BmrFI CCNGG 2 cut(s) 50, 324
BpiI GAAGAC 1 cut(s) 276
BsaBI GATNNNNATC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 322
Bse1I ACTGG 2 cut(s) 88, 227
Bse8I GATNNNNATC 1 cut(s) 249
BseBI CCWGG 2 cut(s) 50, 324
BseDI CCNNGG 1 cut(s) 322
BseGI GGATG 1 cut(s) 79
BseJI GATNNNNATC 1 cut(s) 249
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 2 cut(s) 88, 227
BseSI GKGCMC 1 cut(s) 302
BshFI GGCC 1 cut(s) 226
BslFI GGGAC 1 cut(s) 305
BsmAI GTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 236
BsnI GGCC 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 3 cut(s) 19, 61, 165
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 1 cut(s) 22
BspLI GGNNCC 3 cut(s) 54, 144, 321
BspPI GGATC 1 cut(s) 69
BsrI ACTGG 2 cut(s) 88, 227
BssECI CCNNGG 1 cut(s) 322
BssMI GATC 3 cut(s) 19, 61, 165
Bst2UI CCWGG 2 cut(s) 50, 324
Bst4CI ACNGT 1 cut(s) 124
BstAPI GCANNNNNTGC 1 cut(s) 197
BstDEI CTNAG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 79
BstKTI GATC 3 cut(s) 22, 64, 168
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 3 cut(s) 19, 61, 165
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 2 cut(s) 50, 324
BstSCI CCNGG 2 cut(s) 48, 322
BstSLI GKGCMC 1 cut(s) 302
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 2 cut(s) 61, 165
BstYI RGATCY 2 cut(s) 61, 165
BsuRI GGCC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 79
BtsIMutI CAGTG 2 cut(s) 81, 300
Cfr13I GGNCC 2 cut(s) 46, 319
Csp6I GTAC 1 cut(s) 120
CviJI RGCY 6 cut(s) 114, 143, 226, 265, 331, 336
CviKI_1 RGCY 6 cut(s) 114, 143, 226, 265, 331, 336
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 1 cut(s) 9
DpnI GATC 3 cut(s) 21, 63, 167
DpnII GATC 3 cut(s) 19, 61, 165
EaeI YGGCCR 1 cut(s) 224
Eco47I GGWCC 2 cut(s) 46, 319
EcoRII CCWGG 2 cut(s) 48, 322
FaiI YATR 1 cut(s) 104
FaqI GGGAC 1 cut(s) 305
FokI GGATG 1 cut(s) 86
FspBI CTAG 2 cut(s) 95, 332
HaeIII GGCC 1 cut(s) 226
HinfI GANTC 3 cut(s) 185, 245, 308
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 4 cut(s) 12, 70, 147, 172
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 293
HpyCH4III ACNGT 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 9
Kzo9I GATC 3 cut(s) 19, 61, 165
LmnI GCTCC 1 cut(s) 148
MaeI CTAG 2 cut(s) 95, 332
MaeIII GTNAC 1 cut(s) 79
MalI GATC 3 cut(s) 21, 63, 167
MboI GATC 3 cut(s) 19, 61, 165
MboII GAAGA 2 cut(s) 40, 281
MfeI CAATTG 1 cut(s) 15
MflI RGATCY 2 cut(s) 61, 165
MhlI GDGCHC 1 cut(s) 302
MlsI TGGCCA 1 cut(s) 226
MluCI AATT 2 cut(s) 15, 36
MluNI TGGCCA 1 cut(s) 226
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 3 cut(s) 51, 64, 289
Mox20I TGGCCA 1 cut(s) 226
MscI TGGCCA 1 cut(s) 226
MslI CAYNNNNRTG 1 cut(s) 210
Msp20I TGGCCA 1 cut(s) 226
MspR9I CCNGG 2 cut(s) 50, 324
MunI CAATTG 1 cut(s) 15
Mva1269I GAATGC 1 cut(s) 236
MvaI CCWGG 2 cut(s) 50, 324
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeII GATC 3 cut(s) 19, 61, 165
NlaIV GGNNCC 3 cut(s) 54, 144, 321
NmuCI GTSAC 1 cut(s) 79
OliI CACNNNNGTG 1 cut(s) 210
PctI GAATGC 1 cut(s) 236
PfeI GAWTC 2 cut(s) 245, 308
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 48, 322
PspGI CCWGG 2 cut(s) 48, 322
PspN4I GGNNCC 3 cut(s) 54, 144, 321
PspPI GGNCC 2 cut(s) 46, 319
PsuI RGATCY 2 cut(s) 61, 165
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
RseI CAYNNNNRTG 1 cut(s) 210
Sau3AI GATC 3 cut(s) 19, 61, 165
Sau96I GGNCC 2 cut(s) 46, 319
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 2 cut(s) 50, 324
SduI GDGCHC 1 cut(s) 302
SetI ASST 3 cut(s) 58, 259, 267
SinI GGWCC 2 cut(s) 46, 319
SmiMI CAYNNNNRTG 1 cut(s) 210
Sse9I AATT 2 cut(s) 15, 36
SspMI CTAG 2 cut(s) 95, 332
StyD4I CCNGG 2 cut(s) 48, 322
TaaI ACNGT 1 cut(s) 124
TaqI TCGA 1 cut(s) 294
TasI AATT 2 cut(s) 15, 36
TatI WGTACW 1 cut(s) 119
TfiI GAWTC 2 cut(s) 245, 308
TscAI CASTG 2 cut(s) 88, 307
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 4 cut(s) 48, 229, 275, 321
TspRI CASTG 2 cut(s) 88, 307
VpaK11BI GGWCC 2 cut(s) 46, 319
XapI RAATTY 1 cut(s) 36
XspI CTAG 2 cut(s) 95, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.