Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003846

Physical Location & Seq

Genomic Coordinates Reverse (-)

41902058 .. 41904042

Gene Structure 1985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00197570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGTGTCTCAGACAATTGATCTTTTGAAGAATGAAATTCCTCTGGACCAGGAGCCTGTGGATCTGTCAGAGGATGTTGTCACTGGACTTGTTCTAGTGGACATAATCAATGGCTTCTGTACCGTTGGTGCTGGAAATCTGGCTCCAAGAGAACCCGATAGGCAGATCTCGGAGATGATTAGTGAATCTGCAAGACTTGCCAGACACTTTTGTGAAAAGAAATGGCCAGTTTTGGCATTCATTGATTCTCATCAACCTGAAAAGCTGGAAGACCCTTATCCCCTGCATTGTATCGAGGGCACTGATGAATCAAACTTGGTCCCTGCATTAAGTTGGTTGGAGAAAGAACCAAATGTCACAATCAGGCGCAAAGATTGCTACGATGGATTCGTAGGCTCAATTCAACCTGATGGTTCAAATGCTTTTGTTGATTGGGTGAAGAAAAAATCAGATCAGAACTTTATTAGTGGTAGGAATATGCACGGACATCTGTGTTCTGGACTTTGTTTGTTCCACAATATCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0017144 GO:0019860 GO:0034641 GO:0042737 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Isochorismatase

Protein Analysis

175

Amino Acids

19.59

Weight (kDa)

4.87

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Isochorismatase	PF00857	29 - 138	6.2e-11	Isochorismatase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22570 AT2G22570
fragaria_vesca	FvH4_1g19620 FvH4_1g19620
malus_domestica	MD01G1039800.v1.1 MD15G1312000.v1.1
prunus_persica	Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1 Prupe.6G202000_v2.0.a1
pyrus_communis	pycom01g06760 pycom15g27560
rosa_chinensis	RchiOBHm_Chr2g0111171 RchiOBHm_Chr6g0270861
rosa_laevigata	RLG00000013764 RLG00000017870
rosa_multiflora	Rmu_sc0010417.1_g000002 Rmu_sc0030113.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132660 Rroxscaffold_7G00197570
rosa_rugosa	Rorug02G0171200 Rorug06G0056900 Rorug06G0056900
rosa_samantha	Rh2AG224200 Rh2BG235900 Rh2CG227300 Rh2DG231900 Rh6AG176300 Rh6BG179700 Rh6CG175700 Rh6DG168000
rosa_wichuraiana	Rw2G017310 Rw6G015020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	69
AcoI	YGGCCR	1 cut(s)	224
AcsI	RAATTY	1 cut(s)	36
AfaI	GTAC	1 cut(s)	121
AgsI	TTSAA	3 cut(s)	28, 404, 417
AjnI	CCWGG	1 cut(s)	48
AleI	CACNNNNGTG	1 cut(s)	210
AluBI	AGCT	2 cut(s)	265, 525
AluI	AGCT	2 cut(s)	265, 525
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	69
AoxI	GGCC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	2 cut(s)	46, 319
AsuHPI	GGTGA	1 cut(s)	448
AvaII	GGWCC	2 cut(s)	46, 319
BaeGI	GKGCMC	1 cut(s)	302
BalI	TGGCCA	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	276
BccI	CCATC	2 cut(s)	377, 404
BciT130I	CCWGG	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	2 cut(s)	95, 526
BglII	AGATCT	1 cut(s)	165
Bme1390I	CCNGG	1 cut(s)	50
Bme18I	GGWCC	2 cut(s)	46, 319
BmgT120I	GGNCC	2 cut(s)	46, 319
BmiI	GGNNCC	3 cut(s)	54, 144, 321
BmrFI	CCNGG	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	249
Bse1I	ACTGG	2 cut(s)	88, 227
Bse8I	GATNNNNATC	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	50
BseGI	GGATG	1 cut(s)	79
BseJI	GATNNNNATC	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	2 cut(s)	88, 227
BseSI	GKGCMC	1 cut(s)	302
BshFI	GGCC	1 cut(s)	226
BslFI	GGGAC	1 cut(s)	305
BsmAI	GTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	305
BsmI	GAATGC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	4 cut(s)	19, 61, 165, 451
BspANI	GGCC	1 cut(s)	226
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	3 cut(s)	54, 144, 321
BspPI	GGATC	1 cut(s)	69
BsrI	ACTGG	2 cut(s)	88, 227
BssMI	GATC	4 cut(s)	19, 61, 165, 451
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	124
BstAPI	GCANNNNNTGC	2 cut(s)	197, 375
BstDEI	CTNAG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	4 cut(s)	22, 64, 168, 454
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	4 cut(s)	19, 61, 165, 451
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 375
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstSLI	GKGCMC	1 cut(s)	302
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	2 cut(s)	61, 165
BstYI	RGATCY	2 cut(s)	61, 165
BsuRI	GGCC	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	81, 300
CfoI	GCGC	1 cut(s)	369
Cfr13I	GGNCC	2 cut(s)	46, 319
Csp6I	GTAC	1 cut(s)	120
CviJI	RGCY	7 cut(s)	55, 114, 143, 226, 265, 396, 525
CviKI_1	RGCY	7 cut(s)	55, 114, 143, 226, 265, 396, 525
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	4 cut(s)	21, 63, 167, 453
DpnII	GATC	4 cut(s)	19, 61, 165, 451
EaeI	YGGCCR	1 cut(s)	224
Eco47I	GGWCC	2 cut(s)	46, 319
EcoRII	CCWGG	1 cut(s)	48
FaiI	YATR	2 cut(s)	104, 479
FaqI	GGGAC	1 cut(s)	305
FokI	GGATG	1 cut(s)	86
FspBI	CTAG	2 cut(s)	95, 526
GlaI	GCGC	1 cut(s)	368
HaeIII	GGCC	1 cut(s)	226
HhaI	GCGC	1 cut(s)	369
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HinfI	GANTC	4 cut(s)	185, 245, 308, 387
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	5 cut(s)	12, 70, 172, 451, 456
Hpy188III	TCNNGA	2 cut(s)	44, 498
Hpy8I	GTNNAC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	4 cut(s)	191, 286, 326, 481
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 375
HpyF3I	CTNAG	1 cut(s)	9
HspAI	GCGC	1 cut(s)	367
Kzo9I	GATC	4 cut(s)	19, 61, 165, 451
LmnI	GCTCC	2 cut(s)	52, 148
MaeI	CTAG	2 cut(s)	95, 526
MaeIII	GTNAC	2 cut(s)	79, 355
MalI	GATC	4 cut(s)	21, 63, 167, 453
MboI	GATC	4 cut(s)	19, 61, 165, 451
MboII	GAAGA	3 cut(s)	40, 281, 451
MfeI	CAATTG	1 cut(s)	15
MflI	RGATCY	2 cut(s)	61, 165
MhlI	GDGCHC	1 cut(s)	302
MlsI	TGGCCA	1 cut(s)	226
MluCI	AATT	3 cut(s)	15, 36, 399
MluNI	TGGCCA	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	3 cut(s)	51, 64, 289
Mox20I	TGGCCA	1 cut(s)	226
MscI	TGGCCA	1 cut(s)	226
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	1 cut(s)	210
Msp20I	TGGCCA	1 cut(s)	226
MspR9I	CCNGG	1 cut(s)	50
MunI	CAATTG	1 cut(s)	15
Mva1269I	GAATGC	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	197, 375
NdeII	GATC	4 cut(s)	19, 61, 165, 451
NlaIV	GGNNCC	3 cut(s)	54, 144, 321
NmuCI	GTSAC	2 cut(s)	79, 355
OliI	CACNNNNGTG	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PctI	GAATGC	1 cut(s)	236
PfeI	GAWTC	4 cut(s)	185, 245, 308, 387
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	3 cut(s)	54, 144, 321
PspPI	GGNCC	2 cut(s)	46, 319
PsuI	RGATCY	2 cut(s)	61, 165
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	329
Sau3AI	GATC	4 cut(s)	19, 61, 165, 451
Sau96I	GGNCC	2 cut(s)	46, 319
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	302
SetI	ASST	4 cut(s)	259, 267, 409, 527
SinI	GGWCC	2 cut(s)	46, 319
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	3 cut(s)	15, 36, 399
SspMI	CTAG	2 cut(s)	95, 526
StyD4I	CCNGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	1 cut(s)	294
TasI	AATT	3 cut(s)	15, 36, 399
TfiI	GAWTC	4 cut(s)	185, 245, 308, 387
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	2 cut(s)	88, 307
TseFI	GTSAC	2 cut(s)	79, 355
Tsp45I	GTSAC	2 cut(s)	79, 355
TspDTI	ATGAA	3 cut(s)	48, 229, 321
TspGWI	ACGGA	1 cut(s)	498
TspRI	CASTG	2 cut(s)	88, 307
VpaK11BI	GGWCC	2 cut(s)	46, 319
XapI	RAATTY	1 cut(s)	36
XspI	CTAG	2 cut(s)	95, 526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.