AT2G23340

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014979
Physical Location & Seq
Forward (+)
9937792 .. 9938997
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G23340.1

Sequence Viewer

Length: 531 bp
ATGGAGACGGAAGCGGCGGTGACAGCGACGGTTACGGCGGCGACGATGGGGATTGGGACGAGGAAGAGAGATCTGAAACCGTATAAAGGAATACGAATGAGGAAATGGGGGAAATGGGTGGCGGAGATACGGGAACCGAATAAGAGATCAAGGATCTGGTTAGGTTCTTATGCGACGCCTGAAGCGGCGGCGAGAGCTTACGACACTGCTGTTTTTTACCTCCGTGGTCCTTCAGCGAGGCTTAATTTTCCGGAGCTTTTGGCTGGACTTACTGTTTCTAACGGCGGAGGAAGAGGTGGTGATTTATCGGCGGCGTATATTAGGAGAAAAGCGGCGGAGGTTGGTGCTCAGGTTGATGCGCTTGGAGCGACGGTGGTTGTGAATACCGGCGGCGAGAATCGCGGTGATTACGAGAAGATTGAGAATTGTCGTAAGAGCGGTAACGGGTCATTGGAACGGGTCGATTTGAATAAATTACCCGACCCGGAAAATTCGGATGGTGATGATGACGAATGTGTGAAAAGAAGATAG

Protein Analysis

176

Amino Acids

19.12

Weight (kDa)

9.27

Isoelectric Point (pI)

33.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 28 - 76 2.3e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23340 AT3G50260
fragaria_vesca FvH4_1g16370
malus_domestica MD02G1176200.v1.1 MD15G1286600.v1.1
prunus_persica Prupe.6G231500_v2.0.a1
pyrus_communis pycom02g14240 pycom15g24990
rosa_chinensis RchiOBHm_Chr2g0106241
rosa_laevigata RLG00000017482
rosa_multiflora Rmu_sc0008603.1_g000012
rosa_roxburghii Rroxscaffold_2G00137340
rosa_rugosa Rorug02G0133700
rosa_samantha Rh2AG184800 Rh2CG189900
rosa_wichuraiana Rw2G014430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 438
AccII CGCG 1 cut(s) 402
AccIII TCCGGA 1 cut(s) 250
AclWI GGATC 1 cut(s) 161
AcsI RAATTY 1 cut(s) 490
AcuI CTGAAG 2 cut(s) 201, 216
AcyI GRCGYC 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 1 cut(s) 469
AluBI AGCT 2 cut(s) 197, 256
AluI AGCT 2 cut(s) 197, 256
Alw21I GWGCWC 1 cut(s) 349
AlwI GGATC 1 cut(s) 161
Aor13HI TCCGGA 1 cut(s) 250
ApoI RAATTY 1 cut(s) 490
AspLEI GCGC 1 cut(s) 361
AspS9I GGNCC 1 cut(s) 227
AsuC2I CCSGG 1 cut(s) 485
AsuHPI GGTGA 4 cut(s) 31, 311, 416, 512
AvaII GGWCC 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 349
BccI CCATC 2 cut(s) 40, 491
BceAI ACGGC 2 cut(s) 51, 298
BcnI CCSGG 1 cut(s) 485
BglII AGATCT 1 cut(s) 70
BisI GCNGC 7 cut(s) 15, 39, 186, 189, 312, 333, 391
BlsI GCNGC 7 cut(s) 16, 40, 187, 190, 313, 334, 392
Bme1390I CCNGG 1 cut(s) 485
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 485
BmsI GCATC 1 cut(s) 346
Bpu10I CCTNAGC 1 cut(s) 348
BpuMI CCSGG 1 cut(s) 485
BsaHI GRCGYC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 223
BsaWI WCCGGW 1 cut(s) 250
BsaXI ACNNNNNCTCC 2 cut(s) 357, 387
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse118I RCCGGY 1 cut(s) 386
BseAI TCCGGA 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 1 cut(s) 502
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMII CTCAG 1 cut(s) 362
Bsh1236I CGCG 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 349
BsiSI CCGG 3 cut(s) 251, 387, 485
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 349
Bsp13I TCCGGA 1 cut(s) 250
Bsp143I GATC 3 cut(s) 70, 146, 153
BspCNI CTCAG 1 cut(s) 361
BspEI TCCGGA 1 cut(s) 250
BspFNI CGCG 1 cut(s) 402
BspLI GGNNCC 1 cut(s) 135
BspPI GGATC 1 cut(s) 161
BsrBI CCGCTC 1 cut(s) 438
BsrFI RCCGGY 1 cut(s) 386
BssAI RCCGGY 1 cut(s) 386
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 3 cut(s) 70, 146, 153
BssNI GRCGYC 1 cut(s) 176
Bst4CI ACNGT 4 cut(s) 31, 81, 274, 373
Bst6I CTCTTC 2 cut(s) 59, 286
BstACI GRCGYC 1 cut(s) 176
BstDEI CTNAG 1 cut(s) 348
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 1 cut(s) 502
BstFNI CGCG 1 cut(s) 402
BstHHI GCGC 1 cut(s) 361
BstKTI GATC 3 cut(s) 73, 149, 156
BstMBI GATC 3 cut(s) 70, 146, 153
BstMWI GCNNNNNNNGC 4 cut(s) 23, 194, 365, 399
BstSCI CCNGG 1 cut(s) 483
BstUI CGCG 1 cut(s) 402
BstX2I RGATCY 2 cut(s) 70, 153
BstYI RGATCY 2 cut(s) 70, 153
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 1 cut(s) 502
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 204
CfoI GCGC 1 cut(s) 361
Cfr10I RCCGGY 1 cut(s) 386
Cfr13I GGNCC 1 cut(s) 227
CseI GACGC 1 cut(s) 184
CviJI RGCY 4 cut(s) 197, 241, 256, 263
CviKI_1 RGCY 4 cut(s) 197, 241, 256, 263
DdeI CTNAG 1 cut(s) 348
DpnI GATC 3 cut(s) 72, 148, 155
DpnII GATC 3 cut(s) 70, 146, 153
Eam1104I CTCTTC 2 cut(s) 59, 286
EarI CTCTTC 2 cut(s) 59, 286
EciI GGCGGA 3 cut(s) 137, 300, 350
Eco47I GGWCC 1 cut(s) 227
Eco57I CTGAAG 2 cut(s) 201, 216
FaiI YATR 3 cut(s) 84, 171, 318
FaqI GGGAC 1 cut(s) 70
Fnu4HI GCNGC 7 cut(s) 15, 39, 186, 189, 312, 333, 391
FokI GGATG 1 cut(s) 509
Fsp4HI GCNGC 7 cut(s) 15, 39, 186, 189, 312, 333, 391
GlaI GCGC 1 cut(s) 360
GluI GCNGC 7 cut(s) 15, 39, 186, 189, 312, 333, 391
HapII CCGG 3 cut(s) 251, 387, 485
HgaI GACGC 1 cut(s) 184
HhaI GCGC 1 cut(s) 361
Hin1I GRCGYC 1 cut(s) 176
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HinfI GANTC 1 cut(s) 397
HpaII CCGG 3 cut(s) 251, 387, 485
HphI GGTGA 4 cut(s) 31, 311, 416, 512
Hpy188I TCNGA 2 cut(s) 75, 496
Hpy188III TCNNGA 1 cut(s) 251
Hpy99I CGWCG 4 cut(s) 31, 46, 178, 373
HpyAV CCTTC 1 cut(s) 240
HpyCH4III ACNGT 4 cut(s) 31, 81, 274, 373
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 194, 365, 399
HpyF3I CTNAG 1 cut(s) 348
Hsp92I GRCGYC 1 cut(s) 176
HspAI GCGC 1 cut(s) 359
Kpn2I TCCGGA 1 cut(s) 250
Kzo9I GATC 3 cut(s) 70, 146, 153
LmnI GCTCC 2 cut(s) 253, 365
LpnPI CCDG 7 cut(s) 142, 192, 249, 264, 335, 400, 498
LweI GCATC 1 cut(s) 346
MaeIII GTNAC 3 cut(s) 19, 31, 440
MalI GATC 3 cut(s) 72, 148, 155
MbiI CCGCTC 1 cut(s) 438
MboI GATC 3 cut(s) 70, 146, 153
MboII GAAGA 3 cut(s) 76, 303, 427
MflI RGATCY 2 cut(s) 70, 153
MhlI GDGCHC 1 cut(s) 349
MluCI AATT 4 cut(s) 244, 424, 473, 490
MnlI CCTC 7 cut(s) 54, 93, 230, 231, 281, 287, 331
MroI TCCGGA 1 cut(s) 250
MseI TTAA 1 cut(s) 243
MspI CCGG 3 cut(s) 251, 387, 485
MspR9I CCNGG 1 cut(s) 485
MvnI CGCG 1 cut(s) 402
MwoI GCNNNNNNNGC 4 cut(s) 23, 194, 365, 399
NciI CCSGG 1 cut(s) 485
NdeII GATC 3 cut(s) 70, 146, 153
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 19
PcsI WCGNNNNNNNCGW 1 cut(s) 41
PfeI GAWTC 1 cut(s) 397
PkrI GCNGC 7 cut(s) 16, 40, 187, 190, 313, 334, 392
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 1 cut(s) 227
PsuI RGATCY 2 cut(s) 70, 153
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 7 cut(s) 15, 39, 186, 189, 312, 333, 391
Sau3AI GATC 3 cut(s) 70, 146, 153
Sau96I GGNCC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 485
SduI GDGCHC 1 cut(s) 349
SetI ASST 7 cut(s) 166, 199, 222, 258, 298, 342, 354
SfaNI GCATC 1 cut(s) 346
SinI GGWCC 1 cut(s) 227
Sse9I AATT 4 cut(s) 244, 424, 473, 490
StyD4I CCNGG 1 cut(s) 483
TaaI ACNGT 4 cut(s) 31, 81, 274, 373
TaqI TCGA 1 cut(s) 462
TasI AATT 4 cut(s) 244, 424, 473, 490
TauI GCSGC 7 cut(s) 17, 41, 188, 191, 314, 335, 393
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspGWI ACGGA 2 cut(s) 23, 212
TspRI CASTG 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 227
XapI RAATTY 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.