RchiOBHm_Chr2g0106241

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014979
Physical Location & Seq
Reverse (-)
17707485 .. 17708731
1247 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48034

Sequence Viewer

Length: 522 bp
ATGGAGGGTCAAGAAGCTGCGGCTGCGGCTGCGGCCAATAGGAAGAGAGGCGACAACGACAAGCCGTACAAGGGGATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCCGAGATTCGCGAGCCCAACAAGCGCTCCCGGATTTGGCTCGGGTCGTACTCGACTCCCGTCGCCGCCGCCCGGGCCTACGACACCGCCGTCTTCTACTTGAGGGGCCCGTCCGCGAGGCTCAATTTTCCCGAGGCGCTGCCGGTCGTCGGCGGAGGGTGCGGATGCGACGGCGACATGTCGGCGGCGTCGATAAGGAAGAAGGCCACCGAGGTCGGCGCCAGAGTCGACGCGGTGGAGACGGCCATGCGGCAACACAGGGCGGCTGCGGCGGGGGGTCCGATGGAGGAGATGAAGCCGTGTAGGGCGGCGGCGGCGGAGGAGGAGGAGAGCGGGTTCGTCGATCGGGTCGACTTGAACAAGATGCCCGACCCGGAGGAAACGGACGGCGGAGTCTGCGATTGGGGGAGGAATTAA

Protein Analysis

173

Amino Acids

18.69

Weight (kDa)

7.63

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 23 - 71 5.5e-12 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23340 AT3G50260
fragaria_vesca FvH4_1g16370
malus_domestica MD02G1176200.v1.1 MD15G1286600.v1.1
prunus_persica Prupe.6G231500_v2.0.a1
pyrus_communis pycom02g14240 pycom15g24990
rosa_chinensis RchiOBHm_Chr2g0106241
rosa_laevigata RLG00000017482
rosa_multiflora Rmu_sc0008603.1_g000012
rosa_roxburghii Rroxscaffold_2G00137340
rosa_rugosa Rorug02G0133700
rosa_samantha Rh2AG184800 Rh2CG189900
rosa_wichuraiana Rw2G014430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 194, 497
AccB1I GGYRCC 1 cut(s) 323
AccBSI CCGCTC 1 cut(s) 438
AccI GTMKAC 2 cut(s) 333, 456
AccII CGCG 3 cut(s) 117, 221, 338
AcoI YGGCCR 3 cut(s) 33, 105, 348
AcyI GRCGYC 2 cut(s) 293, 324
AfaI GTAC 2 cut(s) 68, 155
AfeI AGCGCT 1 cut(s) 131
AfiI CCNNNNNNNGG 4 cut(s) 71, 141, 177, 254
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 1 cut(s) 463
AloI GAACNNNNNNTCC 2 cut(s) 425, 457
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 338
Ama87I CYCGRG 3 cut(s) 146, 177, 236
Aor51HI AGCGCT 1 cut(s) 131
AoxI GGCC 6 cut(s) 33, 105, 180, 211, 309, 348
ApaI GGGCCC 1 cut(s) 215
ApeKI GCWGC 5 cut(s) 17, 23, 29, 244, 371
AspLEI GCGC 3 cut(s) 132, 244, 326
AspS9I GGNCC 4 cut(s) 180, 211, 212, 383
AsuC2I CCSGG 4 cut(s) 136, 178, 179, 479
AvaI CYCGRG 3 cut(s) 146, 177, 236
AvaII GGWCC 1 cut(s) 383
BaeGI GKGCMC 1 cut(s) 215
BanI GGYRCC 1 cut(s) 323
BanII GRGCYC 2 cut(s) 123, 215
BbsI GAAGAC 1 cut(s) 190
BbvI GCAGC 5 cut(s) 4, 10, 16, 231, 358
BccI CCATC 1 cut(s) 382
BceAI ACGGC 6 cut(s) 49, 179, 292, 363, 388, 508
BcnI CCSGG 4 cut(s) 136, 178, 179, 479
BcoDI GTCTC 1 cut(s) 338
BfoI RGCGCY 3 cut(s) 133, 245, 327
BglI GCCNNNNNGGC 1 cut(s) 179
Bme1390I CCNGG 4 cut(s) 136, 178, 179, 479
Bme18I GGWCC 1 cut(s) 383
BmeT110I CYCGRG 3 cut(s) 146, 177, 236
BmgT120I GGNCC 4 cut(s) 180, 211, 212, 383
BmiI GGNNCC 4 cut(s) 212, 213, 325, 384
BmrFI CCNGG 4 cut(s) 136, 178, 179, 479
BmsI GCATC 2 cut(s) 260, 459
BoxI GACNNNNGTC 1 cut(s) 164
BpiI GAAGAC 1 cut(s) 190
BpuEI CTTGAG 1 cut(s) 226
BpuMI CCSGG 4 cut(s) 136, 178, 179, 479
BsaHI GRCGYC 2 cut(s) 293, 324
BsaJI CCNNGG 3 cut(s) 177, 237, 315
BsaXI ACNNNNNCTCC 4 cut(s) 116, 146, 425, 455
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 141, 177, 254
Bse118I RCCGGY 1 cut(s) 247
BseDI CCNNGG 3 cut(s) 177, 237, 315
BseGI GGATG 2 cut(s) 87, 275
BseLI CCNNNNNNNGG 4 cut(s) 71, 141, 177, 254
BseRI GAGGAG 4 cut(s) 407, 440, 443, 446
BseSI GKGCMC 1 cut(s) 215
BseXI GCAGC 5 cut(s) 4, 10, 16, 231, 358
Bsh1236I CGCG 3 cut(s) 117, 221, 338
Bsh1285I CGRYCG 2 cut(s) 252, 451
BshFI GGCC 6 cut(s) 35, 107, 182, 213, 311, 350
BshNI GGYRCC 1 cut(s) 323
BsiEI CGRYCG 2 cut(s) 252, 451
BsiHKCI CYCGRG 3 cut(s) 146, 177, 236
BsiSI CCGG 4 cut(s) 136, 178, 248, 479
BslI CCNNNNNNNGG 4 cut(s) 71, 141, 177, 254
BsmAI GTCTC 1 cut(s) 338
BsmBI CGTCTC 1 cut(s) 338
BsnI GGCC 6 cut(s) 35, 107, 182, 213, 311, 350
BsoBI CYCGRG 3 cut(s) 146, 177, 236
Bsp120I GGGCCC 1 cut(s) 211
Bsp1286I GDGCHC 2 cut(s) 123, 215
Bsp143I GATC 1 cut(s) 448
Bsp68I TCGCGA 1 cut(s) 117
BspANI GGCC 6 cut(s) 35, 107, 182, 213, 311, 350
BspFNI CGCG 3 cut(s) 117, 221, 338
BspLI GGNNCC 4 cut(s) 212, 213, 325, 384
BspT107I GGYRCC 1 cut(s) 323
BsrBI CCGCTC 1 cut(s) 438
BsrFI RCCGGY 1 cut(s) 247
BssAI RCCGGY 1 cut(s) 247
BssECI CCNNGG 3 cut(s) 177, 237, 315
BssMI GATC 1 cut(s) 448
BssNI GRCGYC 2 cut(s) 293, 324
Bst6I CTCTTC 1 cut(s) 38
BstACI GRCGYC 2 cut(s) 293, 324
BstC8I GCNNGC 1 cut(s) 119
BstF5I GGATG 2 cut(s) 87, 275
BstFNI CGCG 3 cut(s) 117, 221, 338
BstH2I RGCGCY 3 cut(s) 133, 245, 327
BstHHI GCGC 3 cut(s) 132, 244, 326
BstKTI GATC 1 cut(s) 451
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 1 cut(s) 448
BstMCI CGRYCG 2 cut(s) 252, 451
BstNSI RCATGY 1 cut(s) 286
BstPAI GACNNNNGTC 1 cut(s) 164
BstSCI CCNGG 4 cut(s) 134, 176, 177, 477
BstSLI GKGCMC 1 cut(s) 215
BstUI CGCG 3 cut(s) 117, 221, 338
BstV1I GCAGC 5 cut(s) 4, 10, 16, 231, 358
BstV2I GAAGAC 1 cut(s) 190
BsuRI GGCC 6 cut(s) 35, 107, 182, 213, 311, 350
BtsCI GGATG 2 cut(s) 87, 275
BtuMI TCGCGA 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 119
CfoI GCGC 3 cut(s) 132, 244, 326
Cfr10I RCCGGY 1 cut(s) 247
Cfr13I GGNCC 4 cut(s) 180, 211, 212, 383
Cfr9I CCCGGG 1 cut(s) 177
CseI GACGC 2 cut(s) 282, 344
Csp6I GTAC 2 cut(s) 67, 154
CviAII CATG 2 cut(s) 283, 352
CviQI GTAC 2 cut(s) 67, 154
DinI GGCGCC 1 cut(s) 325
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
DrdI GACNNNNNNGTC 2 cut(s) 194, 497
DseDI GACNNNNNNGTC 2 cut(s) 194, 497
EaeI YGGCCR 3 cut(s) 33, 105, 348
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EciI GGCGGA 3 cut(s) 273, 437, 510
Eco24I GRGCYC 2 cut(s) 123, 215
Eco47I GGWCC 1 cut(s) 383
Eco47III AGCGCT 1 cut(s) 131
Eco88I CYCGRG 3 cut(s) 146, 177, 236
EcoO109I RGGNCCY 1 cut(s) 211
EcoT38I GRGCYC 2 cut(s) 123, 215
EgeI GGCGCC 1 cut(s) 325
EheI GGCGCC 1 cut(s) 325
Esp3I CGTCTC 1 cut(s) 338
FaeI CATG 2 cut(s) 286, 355
FaiI YATR 2 cut(s) 284, 353
FatI CATG 2 cut(s) 282, 351
FauI CCCGC 2 cut(s) 370, 431
FblI GTMKAC 2 cut(s) 333, 456
FokI GGATG 2 cut(s) 94, 282
FriOI GRGCYC 2 cut(s) 123, 215
GlaI GCGC 3 cut(s) 131, 243, 325
HaeII RGCGCY 3 cut(s) 133, 245, 327
HaeIII GGCC 6 cut(s) 35, 107, 182, 213, 311, 350
HapII CCGG 4 cut(s) 136, 178, 248, 479
HgaI GACGC 2 cut(s) 282, 344
HhaI GCGC 3 cut(s) 132, 244, 326
Hin1I GRCGYC 2 cut(s) 293, 324
Hin1II CATG 2 cut(s) 286, 355
Hin6I GCGC 3 cut(s) 130, 242, 324
HinP1I GCGC 3 cut(s) 130, 242, 324
HincII GTYRAC 2 cut(s) 334, 457
HindII GTYRAC 2 cut(s) 334, 457
HinfI GANTC 4 cut(s) 112, 160, 330, 498
HpaII CCGG 4 cut(s) 136, 178, 248, 479
Hpy166II GTNNAC 2 cut(s) 334, 457
Hpy188I TCNGA 1 cut(s) 387
Hpy188III TCNNGA 3 cut(s) 11, 116, 236
Hpy8I GTNNAC 2 cut(s) 334, 457
Hpy99I CGWCG 6 cut(s) 170, 257, 278, 298, 338, 449
HpyAV CCTTC 1 cut(s) 301
Hsp92I GRCGYC 2 cut(s) 293, 324
Hsp92II CATG 2 cut(s) 286, 355
HspAI GCGC 3 cut(s) 130, 242, 324
KasI GGCGCC 1 cut(s) 323
Kzo9I GATC 1 cut(s) 448
LmnI GCTCC 1 cut(s) 137
LpnPI CCDG 6 cut(s) 149, 191, 261, 340, 349, 492
Lsp1109I GCAGC 5 cut(s) 4, 10, 16, 231, 358
LweI GCATC 2 cut(s) 260, 459
MalI GATC 1 cut(s) 450
MbiI CCGCTC 1 cut(s) 438
MboI GATC 1 cut(s) 448
MboII GAAGA 3 cut(s) 55, 190, 316
MhlI GDGCHC 2 cut(s) 123, 215
MluCI AATT 2 cut(s) 229, 517
Mly113I GGCGCC 1 cut(s) 324
MlyI GAGTC 3 cut(s) 154, 339, 507
MseI TTAA 1 cut(s) 520
MspI CCGG 4 cut(s) 136, 178, 248, 479
MspR9I CCNGG 4 cut(s) 136, 178, 179, 479
MvnI CGCG 3 cut(s) 117, 221, 338
NarI GGCGCC 1 cut(s) 324
NciI CCSGG 4 cut(s) 136, 178, 179, 479
NdeII GATC 1 cut(s) 448
NlaIII CATG 2 cut(s) 286, 355
NlaIV GGNNCC 4 cut(s) 212, 213, 325, 384
NmeAIII GCCGAG 1 cut(s) 133
NruI TCGCGA 1 cut(s) 117
NspI RCATGY 1 cut(s) 286
PciI ACATGT 1 cut(s) 282
PcsI WCGNNNNNNNCGW 3 cut(s) 192, 293, 453
PfeI GAWTC 1 cut(s) 112
PfoI TCCNGGA 1 cut(s) 134
Ple19I CGATCG 1 cut(s) 451
PleI GAGTC 3 cut(s) 154, 338, 506
PluTI GGCGCC 1 cut(s) 327
PpsI GAGTC 3 cut(s) 154, 338, 506
PscI ACATGT 1 cut(s) 282
PshAI GACNNNNGTC 1 cut(s) 164
PspN4I GGNNCC 4 cut(s) 212, 213, 325, 384
PspOMI GGGCCC 1 cut(s) 211
PspPI GGNCC 4 cut(s) 180, 211, 212, 383
PvuI CGATCG 1 cut(s) 451
RruI TCGCGA 1 cut(s) 117
RsaI GTAC 2 cut(s) 68, 155
RsaNI GTAC 2 cut(s) 67, 154
SalI GTCGAC 2 cut(s) 332, 455
SaqAI TTAA 1 cut(s) 520
Sau3AI GATC 1 cut(s) 448
Sau96I GGNCC 4 cut(s) 180, 211, 212, 383
SchI GAGTC 3 cut(s) 154, 339, 507
ScrFI CCNGG 4 cut(s) 136, 178, 179, 479
SduI GDGCHC 2 cut(s) 123, 215
SetI ASST 2 cut(s) 19, 321
SfaNI GCATC 2 cut(s) 260, 459
SfoI GGCGCC 1 cut(s) 325
SinI GGWCC 1 cut(s) 383
SmaI CCCGGG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
SrfI GCCCGGGC 1 cut(s) 179
Sse9I AATT 2 cut(s) 229, 517
SspDI GGCGCC 1 cut(s) 323
StyD4I CCNGG 4 cut(s) 134, 176, 177, 477
TaqI TCGA 5 cut(s) 158, 296, 333, 447, 456
TasI AATT 2 cut(s) 229, 517
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 1 cut(s) 520
Tru9I TTAA 1 cut(s) 520
TseI GCWGC 5 cut(s) 17, 23, 29, 244, 371
TspDTI ATGAA 1 cut(s) 413
TspGWI ACGGA 1 cut(s) 503
TspMI CCCGGG 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 383
XceI RCATGY 1 cut(s) 286
XmaI CCCGGG 1 cut(s) 177
XmiI GTMKAC 2 cut(s) 333, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.