Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014979

Physical Location & Seq

Genomic Coordinates Forward (+)

18634546 .. 18635514

Gene Structure 969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G50260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGACGCCGGAGTAGCAGTAAAAGCTGACGTGGCAGTCAAAATGAAGAGAGAAAGACCATTCAAAGGGATCAGAATGAGAAAATGGGGGAAATGGGTTGCGGAGATTCGAGAACCCAACAAGCGTTCAAGACTTTGGCTCGGCTCTTACTCTACTCCCGAAGCGGCGGCGCGTGCATACGACACGGCTGTCTTTTACCTCAGAGGACCAACTGCTACGCTCAACTTCCCGGAGCTTCTGCCGTGTACCTCCGCCGAGGATATGTCAGCGGCAACGATCAGGAAAAAGGCGACGGAGGTGGGAGCTCAAGTAGATGCGATAGGGGCGACGGTGGTGCAGAACAACAAACGCCGCCGCGTTTTTAGTCAAAAGCGTGACTTTGGCGGCGGGTTATTAGAGCTTGTTGACTTGAACAAGTTACCTGACCCGGAAAATCTCGATGATGATTTGGTGGGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010941 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

153

Amino Acids

17.01

Weight (kDa)

9.67

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	21 - 69	9.2e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23340 AT3G50260
fragaria_vesca	FvH4_1g16370
malus_domestica	MD02G1176200.v1.1 MD15G1286600.v1.1
prunus_persica	Prupe.6G231500_v2.0.a1
pyrus_communis	pycom02g14240 pycom15g24990
rosa_chinensis	RchiOBHm_Chr2g0106241
rosa_laevigata	RLG00000017482
rosa_multiflora	Rmu_sc0008603.1_g000012
rosa_roxburghii	Rroxscaffold_2G00137340
rosa_rugosa	Rorug02G0133700
rosa_samantha	Rh2AG184800 Rh2CG189900
rosa_wichuraiana	Rw2G014430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	35, 188
AccII	CGCG	2 cut(s)	172, 357
AciI	CCGC	9 cut(s)	101, 164, 167, 252, 269, 352, 355, 384, 387
AclWI	GGATC	1 cut(s)	77
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	3 cut(s)	64, 129, 412
AjiI	CACGTC	1 cut(s)	31
AluBI	AGCT	4 cut(s)	26, 235, 305, 400
AluI	AGCT	4 cut(s)	26, 235, 305, 400
Alw21I	GWGCWC	1 cut(s)	307
AlwI	GGATC	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	206
AsuC2I	CCSGG	2 cut(s)	230, 428
AvaII	GGWCC	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	307
BceAI	ACGGC	2 cut(s)	201, 226
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BcnI	CCSGG	2 cut(s)	230, 428
BisI	GCNGC	6 cut(s)	165, 168, 270, 352, 355, 385
BlsI	GCNGC	6 cut(s)	166, 169, 271, 353, 356, 386
Bme1390I	CCNGG	2 cut(s)	230, 428
Bme18I	GGWCC	1 cut(s)	206
BmgBI	CACGTC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	206
BmrFI	CCNGG	2 cut(s)	230, 428
BmsI	GCATC	1 cut(s)	304
BpuEI	CTTGAG	1 cut(s)	291
BpuMI	CCSGG	2 cut(s)	230, 428
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	255
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 294, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	214
BsgI	GTGCAG	1 cut(s)	356
Bsh1236I	CGCG	2 cut(s)	172, 357
BsiHKAI	GWGCWC	1 cut(s)	307
BsiSI	CCGG	3 cut(s)	9, 230, 428
BslI	CCNNNNNNNGG	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	2 cut(s)	69, 276
BspACI	CCGC	9 cut(s)	101, 164, 167, 252, 269, 352, 355, 384, 387
BspCNI	CTCAG	1 cut(s)	213
BspFNI	CGCG	2 cut(s)	172, 357
BspPI	GGATC	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	2 cut(s)	69, 276
BssNI	GRCGYC	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	331
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	6
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	200
BstFNI	CGCG	2 cut(s)	172, 357
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	2 cut(s)	72, 279
BstMBI	GATC	2 cut(s)	69, 276
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 23, 32, 173, 323
BstSCI	CCNGG	2 cut(s)	228, 426
BstUI	CGCG	2 cut(s)	172, 357
BtrI	CACGTC	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	174
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	206
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	246
CviJI	RGCY	7 cut(s)	26, 139, 144, 188, 235, 305, 400
CviKI_1	RGCY	7 cut(s)	26, 139, 144, 188, 235, 305, 400
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	2 cut(s)	71, 278
DpnII	GATC	2 cut(s)	69, 276
DrdI	GACNNNNNNGTC	2 cut(s)	35, 188
DseDI	GACNNNNNNGTC	2 cut(s)	35, 188
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
EciI	GGCGGA	1 cut(s)	241
Ecl136II	GAGCTC	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	206
Eco53kI	GAGCTC	1 cut(s)	305
EcoICRI	GAGCTC	1 cut(s)	305
EcoT38I	GRGCYC	1 cut(s)	307
FaiI	YATR	2 cut(s)	178, 263
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FauI	CCCGC	1 cut(s)	380
Fnu4HI	GCNGC	6 cut(s)	165, 168, 270, 352, 355, 385
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	6 cut(s)	165, 168, 270, 352, 355, 385
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	6 cut(s)	165, 168, 270, 352, 355, 385
HapII	CCGG	3 cut(s)	9, 230, 428
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	6
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	3 cut(s)	9, 230, 428
Hpy166II	GTNNAC	2 cut(s)	246, 406
Hpy188I	TCNGA	2 cut(s)	74, 203
Hpy188III	TCNNGA	5 cut(s)	110, 129, 158, 280, 437
Hpy8I	GTNNAC	2 cut(s)	246, 406
Hpy99I	CGWCG	2 cut(s)	295, 331
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	2 cut(s)	176, 337
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 23, 32, 173, 323
HpyF3I	CTNAG	1 cut(s)	200
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	1 cut(s)	6
HspAI	GCGC	1 cut(s)	170
Kzo9I	GATC	2 cut(s)	69, 276
LmnI	GCTCC	2 cut(s)	232, 302
LpnPI	CCDG	5 cut(s)	22, 243, 265, 435, 441
LweI	GCATC	1 cut(s)	304
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	374, 417
MalI	GATC	2 cut(s)	71, 278
MboI	GATC	2 cut(s)	69, 276
MboII	GAAGA	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	307
MnlI	CCTC	5 cut(s)	197, 209, 250, 259, 289
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	3 cut(s)	9, 230, 428
MspR9I	CCNGG	2 cut(s)	230, 428
MvnI	CGCG	2 cut(s)	172, 357
MwoI	GCNNNNNNNGC	5 cut(s)	14, 23, 32, 173, 323
NciI	CCSGG	2 cut(s)	230, 428
NdeII	GATC	2 cut(s)	69, 276
NmeAIII	GCCGAG	2 cut(s)	120, 280
NmuCI	GTSAC	1 cut(s)	374
PfeI	GAWTC	1 cut(s)	106
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	6 cut(s)	166, 169, 271, 353, 356, 386
Psp124BI	GAGCTC	1 cut(s)	307
PspPI	GGNCC	1 cut(s)	206
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
SacI	GAGCTC	1 cut(s)	307
SatI	GCNGC	6 cut(s)	165, 168, 270, 352, 355, 385
Sau3AI	GATC	2 cut(s)	69, 276
Sau96I	GGNCC	1 cut(s)	206
ScrFI	CCNGG	2 cut(s)	230, 428
SduI	GDGCHC	1 cut(s)	307
SetI	ASST	9 cut(s)	28, 33, 201, 237, 251, 300, 307, 402, 424
SfaNI	GCATC	1 cut(s)	304
SinI	GGWCC	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
SsiI	CCGC	9 cut(s)	101, 164, 167, 252, 269, 352, 355, 384, 387
SstI	GAGCTC	1 cut(s)	307
StyD4I	CCNGG	2 cut(s)	228, 426
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	2 cut(s)	109, 438
TauI	GCSGC	6 cut(s)	167, 170, 272, 354, 357, 387
TfiI	GAWTC	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	1 cut(s)	59
TspGWI	ACGGA	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.