FvH4_1g16370

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014979
Physical Location & Seq
Reverse (-)
9445234 .. 9446402
1169 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16370.t1

Sequence Viewer

Length: 453 bp
ATGGAGGGACAAGAAGAACCTAGAAAGAGGGGCGAGAACAACAACGACAAGCCGTACAAGGGGATAAGGATGCGGAAGTGGGGCAAGTGGGTGGCCGAGATTCGCGAGCCCAACAAGCGCTCCCGGATTTGGCTCGGCTCCTACTCCACCCCCGTCGCCGCCGCCCGGGCCTACGACACCGCCGTCTTCTACTTGCGCGGCCCCTCCGCCAGGCTCAATTTCCCCGAGGCCTTGCCGGTCGGCGGCGGCGGGTGCGGCTGCGACGGCGACATGTCCGCCGCGTCGATACGGAAGAAGGCCACCGAGGTCGGCGCGAGGGTCGACGCGGTCGAGACGGCCATGCGAGGCGGACAGCACAAGGCGGTGAAGGAGATGAAGGCGCGCGGGTCGGTGGATCGGGTCGACTTGAATAAGATTCCTGACCCGGAGGAAACGGAGGGCGGGTTAAATTAG

Protein Analysis

151

Amino Acids

16.45

Weight (kDa)

9.45

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 19 - 67 4.1e-12 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23340 AT3G50260
fragaria_vesca FvH4_1g16370
malus_domestica MD02G1176200.v1.1 MD15G1286600.v1.1
prunus_persica Prupe.6G231500_v2.0.a1
pyrus_communis pycom02g14240 pycom15g24990
rosa_chinensis RchiOBHm_Chr2g0106241
rosa_laevigata RLG00000017482
rosa_multiflora Rmu_sc0008603.1_g000012
rosa_roxburghii Rroxscaffold_2G00137340
rosa_rugosa Rorug02G0133700
rosa_samantha Rh2AG184800 Rh2CG189900
rosa_wichuraiana Rw2G014430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 182
AccI GTMKAC 2 cut(s) 321, 402
AccII CGCG 7 cut(s) 105, 198, 281, 314, 326, 382, 384
AclWI GGATC 1 cut(s) 402
AcoI YGGCCR 2 cut(s) 93, 336
AfaI GTAC 1 cut(s) 56
AfeI AGCGCT 1 cut(s) 119
AfiI CCNNNNNNNGG 5 cut(s) 59, 129, 165, 210, 242
AflIII ACRYGT 1 cut(s) 270
AgsI TTSAA 1 cut(s) 409
AjnI CCWGG 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 326
AlwI GGATC 1 cut(s) 402
Ama87I CYCGRG 2 cut(s) 165, 224
Aor51HI AGCGCT 1 cut(s) 119
AoxI GGCC 6 cut(s) 93, 168, 199, 228, 297, 336
ApeKI GCWGC 1 cut(s) 258
AspLEI GCGC 5 cut(s) 120, 198, 314, 382, 384
AspS9I GGNCC 2 cut(s) 168, 200
AsuC2I CCSGG 4 cut(s) 124, 166, 167, 425
AsuHPI GGTGA 1 cut(s) 376
AvaI CYCGRG 2 cut(s) 165, 224
BanII GRGCYC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 178
BbvI GCAGC 1 cut(s) 245
BceAI ACGGC 4 cut(s) 37, 167, 280, 351
BciT130I CCWGG 1 cut(s) 211
BcnI CCSGG 4 cut(s) 124, 166, 167, 425
BcoDI GTCTC 1 cut(s) 326
BfaI CTAG 1 cut(s) 21
BfoI RGCGCY 1 cut(s) 121
BglI GCCNNNNNGGC 1 cut(s) 167
BisI GCNGC 8 cut(s) 159, 162, 199, 244, 247, 256, 259, 279
BlsI GCNGC 8 cut(s) 160, 163, 200, 245, 248, 257, 260, 280
Bme1390I CCNGG 5 cut(s) 124, 166, 167, 211, 425
BmeT110I CYCGRG 2 cut(s) 165, 224
BmgT120I GGNCC 2 cut(s) 168, 200
BmiI GGNNCC 2 cut(s) 139, 202
BmrFI CCNGG 5 cut(s) 124, 166, 167, 211, 425
BmsI GCATC 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 178
BpuMI CCSGG 4 cut(s) 124, 166, 167, 425
BsaJI CCNNGG 3 cut(s) 165, 225, 303
BsaXI ACNNNNNCTCC 3 cut(s) 104, 134, 428
Bsc4I CCNNNNNNNGG 5 cut(s) 59, 129, 165, 210, 242
Bse118I RCCGGY 1 cut(s) 235
BseBI CCWGG 1 cut(s) 211
BseDI CCNNGG 3 cut(s) 165, 225, 303
BseGI GGATG 1 cut(s) 75
BseLI CCNNNNNNNGG 5 cut(s) 59, 129, 165, 210, 242
BsePI GCGCGC 1 cut(s) 380
BseXI GCAGC 1 cut(s) 245
Bsh1236I CGCG 7 cut(s) 105, 198, 281, 314, 326, 382, 384
Bsh1285I CGRYCG 2 cut(s) 240, 330
BshFI GGCC 6 cut(s) 95, 170, 201, 230, 299, 338
BsiEI CGRYCG 2 cut(s) 240, 330
BsiHKCI CYCGRG 2 cut(s) 165, 224
BsiSI CCGG 4 cut(s) 124, 166, 236, 425
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 5 cut(s) 59, 129, 165, 210, 242
BsmAI GTCTC 1 cut(s) 326
BsmBI CGTCTC 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 21
BsnI GGCC 6 cut(s) 95, 170, 201, 230, 299, 338
BsoBI CYCGRG 2 cut(s) 165, 224
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 1 cut(s) 394
Bsp68I TCGCGA 1 cut(s) 105
BspANI GGCC 6 cut(s) 95, 170, 201, 230, 299, 338
BspFNI CGCG 7 cut(s) 105, 198, 281, 314, 326, 382, 384
BspLI GGNNCC 2 cut(s) 139, 202
BspPI GGATC 1 cut(s) 402
BsrFI RCCGGY 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 3 cut(s) 165, 225, 303
BssHII GCGCGC 1 cut(s) 380
BssMI GATC 1 cut(s) 394
Bst2UI CCWGG 1 cut(s) 211
BstC8I GCNNGC 2 cut(s) 107, 382
BstENI CCTNNNNNAGG 1 cut(s) 208
BstF5I GGATG 1 cut(s) 75
BstFNI CGCG 7 cut(s) 105, 198, 281, 314, 326, 382, 384
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 5 cut(s) 120, 198, 314, 382, 384
BstKTI GATC 1 cut(s) 397
BstMAI GTCTC 1 cut(s) 326
BstMBI GATC 1 cut(s) 394
BstMCI CGRYCG 2 cut(s) 240, 330
BstMWI GCNNNNNNNGC 5 cut(s) 115, 167, 252, 255, 264
BstNI CCWGG 1 cut(s) 211
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 5 cut(s) 122, 164, 165, 209, 423
BstUI CGCG 7 cut(s) 105, 198, 281, 314, 326, 382, 384
BstV1I GCAGC 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 178
BsuRI GGCC 6 cut(s) 95, 170, 201, 230, 299, 338
BtsCI GGATG 1 cut(s) 75
BtuMI TCGCGA 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 107, 382
CfoI GCGC 5 cut(s) 120, 198, 314, 382, 384
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 2 cut(s) 168, 200
Cfr9I CCCGGG 1 cut(s) 165
CseI GACGC 2 cut(s) 270, 332
Csp6I GTAC 1 cut(s) 55
CviAII CATG 2 cut(s) 271, 340
CviQI GTAC 1 cut(s) 55
DpnI GATC 1 cut(s) 396
DpnII GATC 1 cut(s) 394
DrdI GACNNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 182
EaeI YGGCCR 2 cut(s) 93, 336
EciI GGCGGA 3 cut(s) 196, 265, 363
Eco147I AGGCCT 1 cut(s) 230
Eco24I GRGCYC 1 cut(s) 111
Eco47III AGCGCT 1 cut(s) 119
Eco88I CYCGRG 2 cut(s) 165, 224
EcoNI CCTNNNNNAGG 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 209
EcoT38I GRGCYC 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 326
FaeI CATG 2 cut(s) 274, 343
FaiI YATR 2 cut(s) 272, 341
FaqI GGGAC 1 cut(s) 21
FatI CATG 2 cut(s) 270, 339
FauI CCCGC 3 cut(s) 242, 377, 434
FblI GTMKAC 2 cut(s) 321, 402
Fnu4HI GCNGC 8 cut(s) 159, 162, 199, 244, 247, 256, 259, 279
FokI GGATG 1 cut(s) 82
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 8 cut(s) 159, 162, 199, 244, 247, 256, 259, 279
FspBI CTAG 1 cut(s) 21
GlaI GCGC 5 cut(s) 119, 197, 313, 381, 383
GluI GCNGC 8 cut(s) 159, 162, 199, 244, 247, 256, 259, 279
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 6 cut(s) 95, 170, 201, 230, 299, 338
HapII CCGG 4 cut(s) 124, 166, 236, 425
HgaI GACGC 2 cut(s) 270, 332
HhaI GCGC 5 cut(s) 120, 198, 314, 382, 384
Hin1II CATG 2 cut(s) 274, 343
Hin6I GCGC 5 cut(s) 118, 196, 312, 380, 382
HinP1I GCGC 5 cut(s) 118, 196, 312, 380, 382
HincII GTYRAC 2 cut(s) 322, 403
HindII GTYRAC 2 cut(s) 322, 403
HinfI GANTC 2 cut(s) 100, 415
HpaII CCGG 4 cut(s) 124, 166, 236, 425
HphI GGTGA 1 cut(s) 376
Hpy166II GTNNAC 2 cut(s) 322, 403
Hpy188III TCNNGA 3 cut(s) 104, 331, 419
Hpy8I GTNNAC 2 cut(s) 322, 403
Hpy99I CGWCG 4 cut(s) 158, 266, 286, 326
HpyAV CCTTC 3 cut(s) 289, 361, 370
HpyF10VI GCNNNNNNNGC 5 cut(s) 115, 167, 252, 255, 264
Hsp92II CATG 2 cut(s) 274, 343
HspAI GCGC 5 cut(s) 118, 196, 312, 380, 382
Kzo9I GATC 1 cut(s) 394
LmnI GCTCC 2 cut(s) 125, 143
LpnPI CCDG 7 cut(s) 137, 179, 196, 223, 249, 432, 438
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 1 cut(s) 60
MaeI CTAG 1 cut(s) 21
MalI GATC 1 cut(s) 396
MboI GATC 1 cut(s) 394
MboII GAAGA 3 cut(s) 26, 178, 304
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 2 cut(s) 217, 448
MnlI CCTC 8 cut(s) 21, 214, 220, 298, 309, 338, 421, 430
MseI TTAA 1 cut(s) 446
MspI CCGG 4 cut(s) 124, 166, 236, 425
MspR9I CCNGG 5 cut(s) 124, 166, 167, 211, 425
MvaI CCWGG 1 cut(s) 211
MvnI CGCG 7 cut(s) 105, 198, 281, 314, 326, 382, 384
MwoI GCNNNNNNNGC 5 cut(s) 115, 167, 252, 255, 264
NciI CCSGG 4 cut(s) 124, 166, 167, 425
NdeII GATC 1 cut(s) 394
NlaIII CATG 2 cut(s) 274, 343
NlaIV GGNNCC 2 cut(s) 139, 202
NmeAIII GCCGAG 2 cut(s) 114, 121
NruI TCGCGA 1 cut(s) 105
NspI RCATGY 1 cut(s) 274
PauI GCGCGC 1 cut(s) 380
PceI AGGCCT 1 cut(s) 230
PciI ACATGT 1 cut(s) 270
PcsI WCGNNNNNNNCGW 2 cut(s) 180, 327
PfeI GAWTC 2 cut(s) 100, 415
PflFI GACNNNGTC 1 cut(s) 326
PfoI TCCNGGA 1 cut(s) 122
PkrI GCNGC 8 cut(s) 160, 163, 200, 245, 248, 257, 260, 280
PscI ACATGT 1 cut(s) 270
Psp6I CCWGG 1 cut(s) 209
PspGI CCWGG 1 cut(s) 209
PspN4I GGNNCC 2 cut(s) 139, 202
PspPI GGNCC 2 cut(s) 168, 200
PsyI GACNNNGTC 1 cut(s) 326
PteI GCGCGC 1 cut(s) 380
RruI TCGCGA 1 cut(s) 105
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SalI GTCGAC 2 cut(s) 320, 401
SaqAI TTAA 1 cut(s) 446
SatI GCNGC 8 cut(s) 159, 162, 199, 244, 247, 256, 259, 279
Sau3AI GATC 1 cut(s) 394
Sau96I GGNCC 2 cut(s) 168, 200
ScrFI CCNGG 5 cut(s) 124, 166, 167, 211, 425
SduI GDGCHC 1 cut(s) 111
SetI ASST 2 cut(s) 22, 309
SfaNI GCATC 1 cut(s) 60
SmaI CCCGGG 1 cut(s) 167
SrfI GCCCGGGC 1 cut(s) 167
Sse9I AATT 2 cut(s) 217, 448
SseBI AGGCCT 1 cut(s) 230
SspMI CTAG 1 cut(s) 21
StuI AGGCCT 1 cut(s) 230
StyD4I CCNGG 5 cut(s) 122, 164, 165, 209, 423
TaqI TCGA 4 cut(s) 284, 321, 330, 402
TasI AATT 2 cut(s) 217, 448
TauI GCSGC 7 cut(s) 161, 164, 201, 246, 249, 258, 281
TfiI GAWTC 2 cut(s) 100, 415
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TseI GCWGC 1 cut(s) 258
TspDTI ATGAA 1 cut(s) 389
TspGWI ACGGA 2 cut(s) 304, 449
TspMI CCCGGG 1 cut(s) 165
Tth111I GACNNNGTC 1 cut(s) 326
XagI CCTNNNNNAGG 1 cut(s) 208
XceI RCATGY 1 cut(s) 274
XmaI CCCGGG 1 cut(s) 165
XmiI GTMKAC 2 cut(s) 321, 402
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.