Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008603.1

Orthogroup ID

OG0014979

Physical Location & Seq

Genomic Coordinates Reverse (-)

70062 .. 70577

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008603.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atggagggtcaagaagctgcggctgcggccaataggaagagaggcgagaacgacaagccgtacaaggggataaggatgaggaagtggggcaagtgggtggccgagattcgcgagcccaacaagcgctcccggatttggctcgggtcctactccactcccgtcgccgccgcccgcgcctacgacaccgccgtcttctacttgaggggcccgtccgccaggctcaattttcccgaggcgctgccggtcgtcggcggagggtgcggatgcgacggcgacatgtccgcggcgtcgataaggaagaaggccaccgaggtcggcgccagagtcgacgcggtcgagacggccatgcggcaacacagggctgcggcggcgggggggccgatggaggagatgaagccgtgtagggctgtatcggcggaggaggagagcgggttcgtggatcgggtcgacttgaacaagatgcccgacccggaggaaacggacgccggagtcgtctgcgactgggggaggaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

171

Amino Acids

18.59

Weight (kDa)

8.35

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23340 AT3G50260
fragaria_vesca	FvH4_1g16370
malus_domestica	MD02G1176200.v1.1 MD15G1286600.v1.1
prunus_persica	Prupe.6G231500_v2.0.a1
pyrus_communis	pycom02g14240 pycom15g24990
rosa_chinensis	RchiOBHm_Chr2g0106241
rosa_laevigata	RLG00000017482
rosa_multiflora	Rmu_sc0008603.1_g000012
rosa_roxburghii	Rroxscaffold_2G00137340
rosa_rugosa	Rorug02G0133700
rosa_samantha	Rh2AG184800 Rh2CG189900
rosa_wichuraiana	Rw2G014430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	188, 488
AccB1I	GGYRCC	1 cut(s)	317
AccBSI	CCGCTC	1 cut(s)	429
AccI	GTMKAC	2 cut(s)	327, 447
AccII	CGCG	4 cut(s)	111, 174, 284, 332
AclWI	GGATC	1 cut(s)	447
AcoI	YGGCCR	3 cut(s)	27, 99, 342
AcyI	GRCGYC	3 cut(s)	287, 318, 483
AfaI	GTAC	1 cut(s)	62
AfeI	AGCGCT	1 cut(s)	125
AfiI	CCNNNNNNNGG	3 cut(s)	65, 135, 248
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	1 cut(s)	454
AjnI	CCWGG	1 cut(s)	215
AloI	GAACNNNNNNTCC	2 cut(s)	416, 448
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	1 cut(s)	447
Ama87I	CYCGRG	2 cut(s)	140, 230
Aor51HI	AGCGCT	1 cut(s)	125
AoxI	GGCC	6 cut(s)	27, 99, 205, 303, 342, 377
ApaI	GGGCCC	1 cut(s)	209
ApeKI	GCWGC	4 cut(s)	17, 23, 238, 362
AspLEI	GCGC	4 cut(s)	126, 176, 238, 320
AspS9I	GGNCC	4 cut(s)	144, 205, 206, 377
AsuC2I	CCSGG	2 cut(s)	130, 470
AvaI	CYCGRG	2 cut(s)	140, 230
AvaII	GGWCC	1 cut(s)	144
BaeGI	GKGCMC	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	317
BanII	GRGCYC	2 cut(s)	117, 209
BbsI	GAAGAC	1 cut(s)	184
BbvI	GCAGC	4 cut(s)	4, 10, 225, 349
BccI	CCATC	1 cut(s)	376
BceAI	ACGGC	5 cut(s)	43, 173, 286, 357, 382
BciT130I	CCWGG	1 cut(s)	217
BcnI	CCSGG	2 cut(s)	130, 470
BcoDI	GTCTC	1 cut(s)	332
BfoI	RGCGCY	3 cut(s)	127, 239, 321
Bme1390I	CCNGG	3 cut(s)	130, 217, 470
Bme18I	GGWCC	1 cut(s)	144
BmeT110I	CYCGRG	2 cut(s)	140, 230
BmgT120I	GGNCC	4 cut(s)	144, 205, 206, 377
BmiI	GGNNCC	5 cut(s)	145, 206, 207, 319, 378
BmrFI	CCNGG	3 cut(s)	130, 217, 470
BmrI	ACTGGG	1 cut(s)	511
BmsI	GCATC	2 cut(s)	254, 450
BmuI	ACTGGG	1 cut(s)	511
BpiI	GAAGAC	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	220
BpuMI	CCSGG	2 cut(s)	130, 470
BsaHI	GRCGYC	3 cut(s)	287, 318, 483
BsaJI	CCNNGG	3 cut(s)	231, 282, 309
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 416, 446
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 135, 248
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	506
BseBI	CCWGG	1 cut(s)	217
BseDI	CCNNGG	3 cut(s)	231, 282, 309
BseGI	GGATG	2 cut(s)	81, 269
BseLI	CCNNNNNNNGG	3 cut(s)	65, 135, 248
BseNI	ACTGG	1 cut(s)	506
BseRI	GAGGAG	3 cut(s)	401, 434, 437
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	4 cut(s)	4, 10, 225, 349
Bsh1236I	CGCG	4 cut(s)	111, 174, 284, 332
Bsh1285I	CGRYCG	2 cut(s)	246, 336
BshFI	GGCC	6 cut(s)	29, 101, 207, 305, 344, 379
BshNI	GGYRCC	1 cut(s)	317
BsiEI	CGRYCG	2 cut(s)	246, 336
BsiHKCI	CYCGRG	2 cut(s)	140, 230
BsiSI	CCGG	4 cut(s)	130, 242, 470, 486
BslI	CCNNNNNNNGG	3 cut(s)	65, 135, 248
BsmAI	GTCTC	1 cut(s)	332
BsmBI	CGTCTC	1 cut(s)	332
BsnI	GGCC	6 cut(s)	29, 101, 207, 305, 344, 379
BsoBI	CYCGRG	2 cut(s)	140, 230
Bsp120I	GGGCCC	1 cut(s)	205
Bsp1286I	GDGCHC	2 cut(s)	117, 209
Bsp143I	GATC	1 cut(s)	439
Bsp68I	TCGCGA	1 cut(s)	111
BspANI	GGCC	6 cut(s)	29, 101, 207, 305, 344, 379
BspFNI	CGCG	4 cut(s)	111, 174, 284, 332
BspLI	GGNNCC	5 cut(s)	145, 206, 207, 319, 378
BspPI	GGATC	1 cut(s)	447
BspT107I	GGYRCC	1 cut(s)	317
BsrBI	CCGCTC	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	506
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	3 cut(s)	231, 282, 309
BssMI	GATC	1 cut(s)	439
BssNI	GRCGYC	3 cut(s)	287, 318, 483
Bst2UI	CCWGG	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	3 cut(s)	287, 318, 483
BstC8I	GCNNGC	2 cut(s)	113, 172
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	2 cut(s)	81, 269
BstFNI	CGCG	4 cut(s)	111, 174, 284, 332
BstH2I	RGCGCY	3 cut(s)	127, 239, 321
BstHHI	GCGC	4 cut(s)	126, 176, 238, 320
BstKTI	GATC	1 cut(s)	442
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	1 cut(s)	439
BstMCI	CGRYCG	2 cut(s)	246, 336
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 26, 121, 173, 258, 368, 413
BstNI	CCWGG	1 cut(s)	217
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	3 cut(s)	128, 215, 468
BstSLI	GKGCMC	1 cut(s)	209
BstUI	CGCG	4 cut(s)	111, 174, 284, 332
BstV1I	GCAGC	4 cut(s)	4, 10, 225, 349
BstV2I	GAAGAC	1 cut(s)	184
BsuRI	GGCC	6 cut(s)	29, 101, 207, 305, 344, 379
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	81, 269
BtuMI	TCGCGA	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	113, 172
CfoI	GCGC	4 cut(s)	126, 176, 238, 320
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	4 cut(s)	144, 205, 206, 377
Cfr42I	CCGCGG	1 cut(s)	285
CseI	GACGC	3 cut(s)	276, 338, 491
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	2 cut(s)	277, 346
CviQI	GTAC	1 cut(s)	61
DinI	GGCGCC	1 cut(s)	319
DpnI	GATC	1 cut(s)	441
DpnII	GATC	1 cut(s)	439
DrdI	GACNNNNNNGTC	2 cut(s)	188, 488
DseDI	GACNNNNNNGTC	2 cut(s)	188, 488
EaeI	YGGCCR	3 cut(s)	27, 99, 342
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EciI	GGCGGA	3 cut(s)	202, 267, 431
Eco24I	GRGCYC	2 cut(s)	117, 209
Eco47I	GGWCC	1 cut(s)	144
Eco47III	AGCGCT	1 cut(s)	125
Eco88I	CYCGRG	2 cut(s)	140, 230
EcoO109I	RGGNCCY	2 cut(s)	144, 205
EcoRII	CCWGG	1 cut(s)	215
EcoT38I	GRGCYC	2 cut(s)	117, 209
EgeI	GGCGCC	1 cut(s)	319
EheI	GGCGCC	1 cut(s)	319
Esp3I	CGTCTC	1 cut(s)	332
FaeI	CATG	2 cut(s)	280, 349
FaiI	YATR	2 cut(s)	278, 347
FatI	CATG	2 cut(s)	276, 345
FauI	CCCGC	3 cut(s)	179, 364, 422
FblI	GTMKAC	2 cut(s)	327, 447
FokI	GGATG	2 cut(s)	88, 276
FriOI	GRGCYC	2 cut(s)	117, 209
GlaI	GCGC	4 cut(s)	125, 175, 237, 319
HaeII	RGCGCY	3 cut(s)	127, 239, 321
HaeIII	GGCC	6 cut(s)	29, 101, 207, 305, 344, 379
HapII	CCGG	4 cut(s)	130, 242, 470, 486
HgaI	GACGC	3 cut(s)	276, 338, 491
HhaI	GCGC	4 cut(s)	126, 176, 238, 320
Hin1I	GRCGYC	3 cut(s)	287, 318, 483
Hin1II	CATG	2 cut(s)	280, 349
Hin6I	GCGC	4 cut(s)	124, 174, 236, 318
HinP1I	GCGC	4 cut(s)	124, 174, 236, 318
HincII	GTYRAC	2 cut(s)	328, 448
HindII	GTYRAC	2 cut(s)	328, 448
HinfI	GANTC	3 cut(s)	106, 324, 489
HpaII	CCGG	4 cut(s)	130, 242, 470, 486
Hpy166II	GTNNAC	2 cut(s)	328, 448
Hpy188III	TCNNGA	4 cut(s)	11, 110, 230, 337
Hpy8I	GTNNAC	2 cut(s)	328, 448
Hpy99I	CGWCG	5 cut(s)	164, 251, 272, 292, 332
HpyAV	CCTTC	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 26, 121, 173, 258, 368, 413
Hsp92I	GRCGYC	3 cut(s)	287, 318, 483
Hsp92II	CATG	2 cut(s)	280, 349
HspAI	GCGC	4 cut(s)	124, 174, 236, 318
KasI	GGCGCC	1 cut(s)	317
KspI	CCGCGG	1 cut(s)	285
Kzo9I	GATC	1 cut(s)	439
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	9 cut(s)	143, 202, 229, 255, 334, 343, 483, 487, 499
Lsp1109I	GCAGC	4 cut(s)	4, 10, 225, 349
LweI	GCATC	2 cut(s)	254, 450
MalI	GATC	1 cut(s)	441
MbiI	CCGCTC	1 cut(s)	429
MboI	GATC	1 cut(s)	439
MboII	GAAGA	3 cut(s)	49, 184, 310
MhlI	GDGCHC	2 cut(s)	117, 209
MluCI	AATT	2 cut(s)	223, 511
Mly113I	GGCGCC	1 cut(s)	318
MlyI	GAGTC	2 cut(s)	333, 498
MseI	TTAA	1 cut(s)	514
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	4 cut(s)	130, 242, 470, 486
MspR9I	CCNGG	3 cut(s)	130, 217, 470
MvaI	CCWGG	1 cut(s)	217
MvnI	CGCG	4 cut(s)	111, 174, 284, 332
MwoI	GCNNNNNNNGC	7 cut(s)	23, 26, 121, 173, 258, 368, 413
NarI	GGCGCC	1 cut(s)	318
NciI	CCSGG	2 cut(s)	130, 470
NdeII	GATC	1 cut(s)	439
NlaIII	CATG	2 cut(s)	280, 349
NlaIV	GGNNCC	5 cut(s)	145, 206, 207, 319, 378
NmeAIII	GCCGAG	1 cut(s)	127
NruI	TCGCGA	1 cut(s)	111
NspI	RCATGY	1 cut(s)	280
PciI	ACATGT	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	3 cut(s)	186, 333, 489
PfeI	GAWTC	1 cut(s)	106
PflFI	GACNNNGTC	1 cut(s)	332
PfoI	TCCNGGA	1 cut(s)	128
PleI	GAGTC	2 cut(s)	332, 497
PluTI	GGCGCC	1 cut(s)	321
PpsI	GAGTC	2 cut(s)	332, 497
PpuMI	RGGWCCY	1 cut(s)	144
PscI	ACATGT	1 cut(s)	276
Psp5II	RGGWCCY	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	215
PspN4I	GGNNCC	5 cut(s)	145, 206, 207, 319, 378
PspOMI	GGGCCC	1 cut(s)	205
PspPI	GGNCC	4 cut(s)	144, 205, 206, 377
PspPPI	RGGWCCY	1 cut(s)	144
PsyI	GACNNNGTC	1 cut(s)	332
RruI	TCGCGA	1 cut(s)	111
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SacII	CCGCGG	1 cut(s)	285
SalI	GTCGAC	2 cut(s)	326, 446
SaqAI	TTAA	1 cut(s)	514
Sau3AI	GATC	1 cut(s)	439
Sau96I	GGNCC	4 cut(s)	144, 205, 206, 377
SchI	GAGTC	2 cut(s)	333, 498
ScrFI	CCNGG	3 cut(s)	130, 217, 470
SduI	GDGCHC	2 cut(s)	117, 209
SetI	ASST	2 cut(s)	19, 315
SfaNI	GCATC	2 cut(s)	254, 450
SfoI	GGCGCC	1 cut(s)	319
Sfr303I	CCGCGG	1 cut(s)	285
SgrBI	CCGCGG	1 cut(s)	285
SinI	GGWCC	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	2 cut(s)	223, 511
SspDI	GGCGCC	1 cut(s)	317
StyD4I	CCNGG	3 cut(s)	128, 215, 468
TaqI	TCGA	4 cut(s)	290, 327, 336, 447
TasI	AATT	2 cut(s)	223, 511
TauI	GCSGC	8 cut(s)	23, 29, 167, 170, 287, 352, 368, 371
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	1 cut(s)	514
Tru9I	TTAA	1 cut(s)	514
TseI	GCWGC	4 cut(s)	17, 23, 238, 362
TspDTI	ATGAA	1 cut(s)	407
TspGWI	ACGGA	1 cut(s)	494
Tth111I	GACNNNGTC	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	144
XceI	RCATGY	1 cut(s)	280
XmiI	GTMKAC	2 cut(s)	327, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.