Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014979

Physical Location & Seq

Genomic Coordinates Forward (+)

75087260 .. 75087652

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00137340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAGGGTCATGAAGAAGCGGCTGCGGCCAATAGGAAGAGAGGCGAGAACGACAAGCCGTACAAGGGGATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCCGAGATTCGCGAGCCCAACAAGCGCTCCCGGATTTGGCTCGGCTCTTACTCGACTCCCGTCGCCGCCGCCCGGGCCTACGACACCGCCGTCTTCTACTTGAGGGGCCCCTCCGCGCGGCTCAATTTTCCCGAGGCTCTGCCGGTCGGCGGCGGCGGCTGCGGCTGCGACGGCGACATGTCGGCGGCGTCGATAAGGAAGAAGGCCACCGAGGTCGGCGCCAGAGTCGACGCGGTCGAGATGGCCATGCGGCAACACAGGGCGGCGGCGGCGGGGGTCCGATGGAGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

130

Amino Acids

14.32

Weight (kDa)

10.27

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	21 - 69	3e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23340 AT3G50260
fragaria_vesca	FvH4_1g16370
malus_domestica	MD02G1176200.v1.1 MD15G1286600.v1.1
prunus_persica	Prupe.6G231500_v2.0.a1
pyrus_communis	pycom02g14240 pycom15g24990
rosa_chinensis	RchiOBHm_Chr2g0106241
rosa_laevigata	RLG00000017482
rosa_multiflora	Rmu_sc0008603.1_g000012
rosa_roxburghii	Rroxscaffold_2G00137340
rosa_rugosa	Rorug02G0133700
rosa_samantha	Rh2AG184800 Rh2CG189900
rosa_wichuraiana	Rw2G014430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	188
AccB1I	GGYRCC	1 cut(s)	317
AccI	GTMKAC	1 cut(s)	327
AccII	CGCG	4 cut(s)	111, 215, 217, 332
AcoI	YGGCCR	3 cut(s)	27, 99, 342
AcyI	GRCGYC	2 cut(s)	287, 318
AfaI	GTAC	1 cut(s)	62
AfeI	AGCGCT	1 cut(s)	125
AfiI	CCNNNNNNNGG	5 cut(s)	65, 135, 171, 216, 248
AflIII	ACRYGT	1 cut(s)	276
Ama87I	CYCGRG	2 cut(s)	171, 230
Aor51HI	AGCGCT	1 cut(s)	125
AoxI	GGCC	6 cut(s)	27, 99, 174, 205, 303, 342
ApaI	GGGCCC	1 cut(s)	209
ApeKI	GCWGC	3 cut(s)	23, 258, 264
AspLEI	GCGC	3 cut(s)	126, 217, 320
AspS9I	GGNCC	4 cut(s)	174, 205, 206, 376
AsuC2I	CCSGG	3 cut(s)	130, 172, 173
AvaI	CYCGRG	2 cut(s)	171, 230
AvaII	GGWCC	1 cut(s)	376
BaeGI	GKGCMC	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	344
BanI	GGYRCC	1 cut(s)	317
BanII	GRGCYC	2 cut(s)	117, 209
BbsI	GAAGAC	1 cut(s)	184
BbvI	GCAGC	3 cut(s)	10, 245, 251
BccI	CCATC	2 cut(s)	334, 375
BceAI	ACGGC	3 cut(s)	43, 173, 286
BcnI	CCSGG	3 cut(s)	130, 172, 173
BfoI	RGCGCY	2 cut(s)	127, 321
BglI	GCCNNNNNGGC	1 cut(s)	173
Bme1390I	CCNGG	3 cut(s)	130, 172, 173
Bme18I	GGWCC	1 cut(s)	376
BmeT110I	CYCGRG	2 cut(s)	171, 230
BmgT120I	GGNCC	4 cut(s)	174, 205, 206, 376
BmiI	GGNNCC	5 cut(s)	206, 207, 208, 319, 377
BmrFI	CCNGG	3 cut(s)	130, 172, 173
BoxI	GACNNNNGTC	1 cut(s)	158
BpiI	GAAGAC	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	220
BpuMI	CCSGG	3 cut(s)	130, 172, 173
BsaHI	GRCGYC	2 cut(s)	287, 318
BsaJI	CCNNGG	3 cut(s)	171, 231, 309
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	5 cut(s)	65, 135, 171, 216, 248
Bse118I	RCCGGY	1 cut(s)	241
BseDI	CCNNGG	3 cut(s)	171, 231, 309
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	5 cut(s)	65, 135, 171, 216, 248
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	3 cut(s)	10, 245, 251
Bsh1236I	CGCG	4 cut(s)	111, 215, 217, 332
Bsh1285I	CGRYCG	2 cut(s)	246, 336
BshFI	GGCC	6 cut(s)	29, 101, 176, 207, 305, 344
BshNI	GGYRCC	1 cut(s)	317
BsiEI	CGRYCG	2 cut(s)	246, 336
BsiHKCI	CYCGRG	2 cut(s)	171, 230
BsiSI	CCGG	3 cut(s)	130, 172, 242
BslI	CCNNNNNNNGG	5 cut(s)	65, 135, 171, 216, 248
BsnI	GGCC	6 cut(s)	29, 101, 176, 207, 305, 344
BsoBI	CYCGRG	2 cut(s)	171, 230
Bsp120I	GGGCCC	1 cut(s)	205
Bsp1286I	GDGCHC	2 cut(s)	117, 209
Bsp68I	TCGCGA	1 cut(s)	111
BspANI	GGCC	6 cut(s)	29, 101, 176, 207, 305, 344
BspFNI	CGCG	4 cut(s)	111, 215, 217, 332
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	5 cut(s)	206, 207, 208, 319, 377
BspT107I	GGYRCC	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	3 cut(s)	171, 231, 309
BssNI	GRCGYC	2 cut(s)	287, 318
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	2 cut(s)	287, 318
BstC8I	GCNNGC	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	4 cut(s)	111, 215, 217, 332
BstH2I	RGCGCY	2 cut(s)	127, 321
BstHHI	GCGC	3 cut(s)	126, 217, 320
BstMCI	CGRYCG	2 cut(s)	246, 336
BstMWI	GCNNNNNNNGC	9 cut(s)	26, 121, 173, 255, 258, 261, 264, 270, 368
BstNSI	RCATGY	1 cut(s)	280
BstPAI	GACNNNNGTC	1 cut(s)	158
BstSCI	CCNGG	3 cut(s)	128, 170, 171
BstSLI	GKGCMC	1 cut(s)	209
BstUI	CGCG	4 cut(s)	111, 215, 217, 332
BstV1I	GCAGC	3 cut(s)	10, 245, 251
BstV2I	GAAGAC	1 cut(s)	184
BsuRI	GGCC	6 cut(s)	29, 101, 176, 207, 305, 344
BtsCI	GGATG	1 cut(s)	81
BtuMI	TCGCGA	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	113
CciI	TCATGA	1 cut(s)	10
CfoI	GCGC	3 cut(s)	126, 217, 320
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	4 cut(s)	174, 205, 206, 376
Cfr9I	CCCGGG	1 cut(s)	171
CseI	GACGC	2 cut(s)	276, 338
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	3 cut(s)	11, 277, 346
CviQI	GTAC	1 cut(s)	61
DinI	GGCGCC	1 cut(s)	319
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
EaeI	YGGCCR	3 cut(s)	27, 99, 342
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco24I	GRGCYC	2 cut(s)	117, 209
Eco47I	GGWCC	1 cut(s)	376
Eco47III	AGCGCT	1 cut(s)	125
Eco88I	CYCGRG	2 cut(s)	171, 230
EcoO109I	RGGNCCY	2 cut(s)	205, 206
EcoT38I	GRGCYC	2 cut(s)	117, 209
EgeI	GGCGCC	1 cut(s)	319
EheI	GGCGCC	1 cut(s)	319
FaeI	CATG	3 cut(s)	14, 280, 349
FaiI	YATR	3 cut(s)	12, 278, 347
FatI	CATG	3 cut(s)	10, 276, 345
FauI	CCCGC	1 cut(s)	364
FblI	GTMKAC	1 cut(s)	327
FokI	GGATG	1 cut(s)	88
FriOI	GRGCYC	2 cut(s)	117, 209
GlaI	GCGC	3 cut(s)	125, 216, 319
HaeII	RGCGCY	2 cut(s)	127, 321
HaeIII	GGCC	6 cut(s)	29, 101, 176, 207, 305, 344
HapII	CCGG	3 cut(s)	130, 172, 242
HgaI	GACGC	2 cut(s)	276, 338
HhaI	GCGC	3 cut(s)	126, 217, 320
Hin1I	GRCGYC	2 cut(s)	287, 318
Hin1II	CATG	3 cut(s)	14, 280, 349
Hin6I	GCGC	3 cut(s)	124, 215, 318
HinP1I	GCGC	3 cut(s)	124, 215, 318
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HinfI	GANTC	3 cut(s)	106, 154, 324
HpaII	CCGG	3 cut(s)	130, 172, 242
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	1 cut(s)	380
Hpy188III	TCNNGA	4 cut(s)	11, 110, 230, 337
Hpy8I	GTNNAC	1 cut(s)	328
Hpy99I	CGWCG	4 cut(s)	164, 272, 292, 332
HpyAV	CCTTC	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	9 cut(s)	26, 121, 173, 255, 258, 261, 264, 270, 368
Hsp92I	GRCGYC	2 cut(s)	287, 318
Hsp92II	CATG	3 cut(s)	14, 280, 349
HspAI	GCGC	3 cut(s)	124, 215, 318
KasI	GGCGCC	1 cut(s)	317
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	5 cut(s)	143, 185, 255, 334, 343
Lsp1109I	GCAGC	3 cut(s)	10, 245, 251
MboII	GAAGA	4 cut(s)	26, 49, 184, 310
MhlI	GDGCHC	2 cut(s)	117, 209
MlsI	TGGCCA	1 cut(s)	344
MluCI	AATT	1 cut(s)	223
MluNI	TGGCCA	1 cut(s)	344
Mly113I	GGCGCC	1 cut(s)	318
MlyI	GAGTC	2 cut(s)	148, 333
MnlI	CCTC	7 cut(s)	35, 72, 195, 220, 226, 304, 378
Mox20I	TGGCCA	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	344
Msp20I	TGGCCA	1 cut(s)	344
MspI	CCGG	3 cut(s)	130, 172, 242
MspR9I	CCNGG	3 cut(s)	130, 172, 173
MvnI	CGCG	4 cut(s)	111, 215, 217, 332
MwoI	GCNNNNNNNGC	9 cut(s)	26, 121, 173, 255, 258, 261, 264, 270, 368
NarI	GGCGCC	1 cut(s)	318
NciI	CCSGG	3 cut(s)	130, 172, 173
NlaIII	CATG	3 cut(s)	14, 280, 349
NlaIV	GGNNCC	5 cut(s)	206, 207, 208, 319, 377
NmeAIII	GCCGAG	2 cut(s)	120, 127
NruI	TCGCGA	1 cut(s)	111
NspI	RCATGY	1 cut(s)	280
PagI	TCATGA	1 cut(s)	10
PciI	ACATGT	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	3 cut(s)	186, 287, 333
PfeI	GAWTC	1 cut(s)	106
PflFI	GACNNNGTC	1 cut(s)	332
PfoI	TCCNGGA	1 cut(s)	128
PleI	GAGTC	2 cut(s)	148, 332
PluTI	GGCGCC	1 cut(s)	321
PpsI	GAGTC	2 cut(s)	148, 332
PscI	ACATGT	1 cut(s)	276
PshAI	GACNNNNGTC	1 cut(s)	158
PspN4I	GGNNCC	5 cut(s)	206, 207, 208, 319, 377
PspOMI	GGGCCC	1 cut(s)	205
PspPI	GGNCC	4 cut(s)	174, 205, 206, 376
PsyI	GACNNNGTC	1 cut(s)	332
RruI	TCGCGA	1 cut(s)	111
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SalI	GTCGAC	1 cut(s)	326
Sau96I	GGNCC	4 cut(s)	174, 205, 206, 376
SchI	GAGTC	2 cut(s)	148, 333
ScrFI	CCNGG	3 cut(s)	130, 172, 173
SduI	GDGCHC	2 cut(s)	117, 209
SetI	ASST	1 cut(s)	315
SfoI	GGCGCC	1 cut(s)	319
SinI	GGWCC	1 cut(s)	376
SmaI	CCCGGG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
SrfI	GCCCGGGC	1 cut(s)	173
Sse9I	AATT	1 cut(s)	223
SspDI	GGCGCC	1 cut(s)	317
StyD4I	CCNGG	3 cut(s)	128, 170, 171
TaqI	TCGA	4 cut(s)	152, 290, 327, 336
TasI	AATT	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	106
TseI	GCWGC	3 cut(s)	23, 258, 264
TspDTI	ATGAA	1 cut(s)	27
TspMI	CCCGGG	1 cut(s)	171
Tth111I	GACNNNGTC	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	376
XceI	RCATGY	1 cut(s)	280
XmaI	CCCGGG	1 cut(s)	171
XmiI	GTMKAC	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.