AT2G23390

function DUF482 (InterPro IPR007434), Acyl-CoA N-acyltransferase (InterPro IPR016181)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006734
Physical Location & Seq
Reverse (-)
9960365 .. 9963646
3282 bp
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UTR
Exon/CDS
Intron
AT2G23390.1

Sequence Viewer

Length: 1410 bp
ATGGCCGTTGTACTTTCCTACTGCAAACCTTCGCCTCCTCTTCGTCGATTCCATCGTCGCTGCGGAAATTTGTGGAAGAAAGAAAATGTTAGGAGTTCAAGACGATCATCTTCGGTTACTGCTATGTTTTGGAAGTCCAATAAGCCTGCGGAAGTAAAGGAATTCGATATATCACTTAGAGATTACACTCTAACTGAATCAAACATTGAGGAAGCTTTGGAAAACAAGCCGAAGCAAAAGGTGATTTCACTATCAGTTGTTTCTTCAATATTTGAGATACCACAAGCTGAATGGGATGCATGTGCGTTGGATTCTTCTCAACCTGAAAGCTATAATCCATTTCTAAGTTATGGATTTCTTTCCAGTTTAGAAGATACTGGTTGTGCCGTTCGGGAAACAGGTTGGATGCCATTACACATTGTTGCAAAGGATGAATGTGAGAGTATTTTGGGTGTTGTTCCACTTTATCTCAAAAGCCATTCTTATGGCGAATTTGTTTTTGATCATTCTTGGGCTGATGCATACCGAAGTTTTGGCGGAAGATATTATCCTAAACTTCAGTGTTGTGTTCCTTTCACCCCAGTTACTGGTCCTAGGATTCTTATCCGTGATAATCCTTGCAAAGAGCAAGTTTTTGATGCTATTGTTTCTGCCATGACGGAATTGGCATCAAAGTTACAAGTTTCATCTTTGCACATTACATTTCCGTCTGGAGCTGAGTGGGACAAATTGAAAGAGAAAGGCTTCTCACAAAGGATTGGAATGCAGTACCACTGGAAAAATCGTGATTATAAAAATTTTGACGAGTTCTTGATGGACATGAAGCAAAGCAAAAGGAAAAATATCCGACAGGAACGCAAAAAGATTGGTACCCAGAATTTGAAAATGAGACGGCTACAAGGAGATGATATAAAGGCTAGGCACTGGGATTCCTTCTATGATTTCTACAGGAACACAACTGATAACAAATGGGGCACACCTTATCTCACAAGGGATTTCTTTCACGACATGGCATCGAAGTTGGGAGACAAGGTATTGCTTGTTTTAGCTGAAGAAAACGAGGAACCTGTTGCAGGAGCATTGAATCTCATTGGAGGAGATACTCTATTTGGGAGACTATGGGGATGTCGTCCCGACTCCTATTATCCTAGTCTCCATTTTGAAGCATGCTATTACCAGGCAATTGAAGCAGCGATAGAGCTTAATCTGAAAACGGTAGAAGCTGGAGCGCAGGGTGAGCATAAGATTCAGCGAGGCTACCTTCCCGTTAAAACATATAGTTGCCATTACATATTCGATGAAGGTTTCAGGCAAGCCATAGACGAGTTTTTAGTGCGCGAATCAAATCAGATGGATTATGTCATCAGACTGATGCATGAAGATGGACCCTTCAAAGAGAAAATAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FemAB_like

Protein Analysis

469

Amino Acids

54.31

Weight (kDa)

6.87

Isoelectric Point (pI)

57.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FemAB_like PF04339 89 - 466 2.3e-157 Peptidogalycan biosysnthesis/recognition
Acetyltransf_6 PF13480 277 - 412 1.3e-12 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 792
Acc65I GGTACC 1 cut(s) 869
AccB1I GGYRCC 1 cut(s) 869
AccB7I CCANNNNNTGG 1 cut(s) 587
AccII CGCG 1 cut(s) 1338
AciI CCGC 3 cut(s) 63, 149, 537
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 67, 161, 491, 796, 877
AcuI CTGAAG 2 cut(s) 542, 1071
AfaI GTAC 3 cut(s) 12, 770, 871
AfiI CCNNNNNNNGG 2 cut(s) 587, 1073
AgsI TTSAA 8 cut(s) 99, 267, 733, 883, 1084, 1163, 1187, 1393
AjnI CCWGG 1 cut(s) 1176
AluBI AGCT 7 cut(s) 215, 287, 330, 716, 1049, 1201, 1223
AluI AGCT 7 cut(s) 215, 287, 330, 716, 1049, 1201, 1223
Alw26I GTCTC 4 cut(s) 883, 1020, 1108, 1157
AlwNI CAGNNNCTG 1 cut(s) 587
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 60, 1190
ApoI RAATTY 5 cut(s) 67, 161, 491, 796, 877
Asp700I GAANNNNTTC 1 cut(s) 743
Asp718I GGTACC 1 cut(s) 869
AspA2I CCTAGG 1 cut(s) 593
AspLEI GCGC 2 cut(s) 1231, 1338
AspS9I GGNCC 2 cut(s) 590, 1385
AsuHPI GGTGA 3 cut(s) 253, 568, 1247
AvaII GGWCC 2 cut(s) 590, 1385
AvrII CCTAGG 1 cut(s) 593
BaeGI GKGCMC 1 cut(s) 977
BanI GGYRCC 1 cut(s) 869
BbvI GCAGC 2 cut(s) 47, 1202
BccI CCATC 4 cut(s) 60, 808, 1345, 1376
BceAI ACGGC 2 cut(s) 371, 908
BciT130I CCWGG 1 cut(s) 1178
BclI TGATCA 1 cut(s) 502
BcoDI GTCTC 4 cut(s) 883, 1020, 1108, 1157
BfaI CTAG 3 cut(s) 594, 918, 1149
BfmI CTRYAG 1 cut(s) 946
BisI GCNGC 2 cut(s) 61, 1191
BlnI CCTAGG 1 cut(s) 593
BlsI GCNGC 2 cut(s) 62, 1192
Bme1390I CCNGG 1 cut(s) 1178
Bme18I GGWCC 2 cut(s) 590, 1385
BmgT120I GGNCC 2 cut(s) 590, 1385
BmiI GGNNCC 3 cut(s) 871, 1065, 1387
BmrFI CCNGG 1 cut(s) 1178
BmrI ACTGGG 2 cut(s) 575, 934
BmsI GCATC 7 cut(s) 286, 396, 508, 628, 677, 1022, 1362
BmuI ACTGGG 2 cut(s) 575, 934
BpmI CTGGAG 2 cut(s) 732, 1245
BsaBI GATNNNNATC 1 cut(s) 602
BsaJI CCNNGG 1 cut(s) 593
BsaXI ACNNNNNCTCC 2 cut(s) 1017, 1047
Bsc4I CCNNNNNNNGG 2 cut(s) 587, 1073
Bse1I ACTGG 6 cut(s) 363, 382, 581, 592, 779, 929
Bse8I GATNNNNATC 1 cut(s) 602
BseBI CCWGG 1 cut(s) 1178
BseDI CCNNGG 1 cut(s) 593
BseGI GGATG 4 cut(s) 301, 411, 436, 1130
BseJI GATNNNNATC 1 cut(s) 602
BseLI CCNNNNNNNGG 2 cut(s) 587, 1073
BseMII CTCAG 1 cut(s) 708
BseNI ACTGG 6 cut(s) 363, 382, 581, 592, 779, 929
BseRI GAGGAG 2 cut(s) 27, 1110
BseSI GKGCMC 1 cut(s) 977
BseXI GCAGC 2 cut(s) 47, 1202
Bsh1236I CGCG 1 cut(s) 1338
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 869
BslFI GGGAC 2 cut(s) 737, 1116
BslI CCNNNNNNNGG 2 cut(s) 587, 1073
BsmAI GTCTC 4 cut(s) 883, 1020, 1108, 1157
BsmBI CGTCTC 1 cut(s) 883
BsmFI GGGAC 2 cut(s) 737, 1116
BsmI GAATGC 1 cut(s) 768
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 977
Bsp143I GATC 2 cut(s) 104, 502
BspACI CCGC 3 cut(s) 63, 149, 537
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 709
BspFNI CGCG 1 cut(s) 1338
BspLI GGNNCC 3 cut(s) 871, 1065, 1387
BspT107I GGYRCC 1 cut(s) 869
BsrI ACTGG 6 cut(s) 363, 382, 581, 592, 779, 929
BssECI CCNNGG 1 cut(s) 593
BssMI GATC 2 cut(s) 104, 502
BssT1I CCWWGG 1 cut(s) 593
Bst2UI CCWGG 1 cut(s) 1178
Bst4CI ACNGT 1 cut(s) 1216
Bst6I CTCTTC 1 cut(s) 45
BstC8I GCNNGC 3 cut(s) 147, 1168, 1314
BstDEI CTNAG 3 cut(s) 176, 344, 717
BstENI CCTNNNNNAGG 1 cut(s) 1071
BstF5I GGATG 4 cut(s) 301, 411, 436, 1130
BstFNI CGCG 1 cut(s) 1338
BstHHI GCGC 2 cut(s) 1231, 1338
BstKTI GATC 2 cut(s) 107, 505
BstMAI GTCTC 4 cut(s) 883, 1020, 1108, 1157
BstMBI GATC 2 cut(s) 104, 502
BstMWI GCNNNNNNNGC 2 cut(s) 1187, 1237
BstNI CCWGG 1 cut(s) 1178
BstNSI RCATGY 2 cut(s) 303, 1170
BstSCI CCNGG 1 cut(s) 1176
BstSFI CTRYAG 1 cut(s) 946
BstSLI GKGCMC 1 cut(s) 977
BstUI CGCG 1 cut(s) 1338
BstV1I GCAGC 2 cut(s) 47, 1202
BstXI CCANNNNNNTGG 1 cut(s) 485
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 4 cut(s) 301, 411, 436, 1130
BtsIMutI CAGTG 3 cut(s) 566, 772, 922
Cac8I GCNNGC 3 cut(s) 147, 1168, 1314
CaiI CAGNNNCTG 1 cut(s) 587
CfoI GCGC 2 cut(s) 1231, 1338
Cfr13I GGNCC 2 cut(s) 590, 1385
Csp6I GTAC 3 cut(s) 11, 769, 870
CviAII CATG 6 cut(s) 300, 655, 820, 1009, 1167, 1376
CviQI GTAC 3 cut(s) 11, 769, 870
DdeI CTNAG 3 cut(s) 176, 344, 717
DpnI GATC 2 cut(s) 106, 504
DpnII GATC 2 cut(s) 104, 502
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
EciI GGCGGA 1 cut(s) 552
Eco130I CCWWGG 1 cut(s) 593
Eco47I GGWCC 2 cut(s) 590, 1385
Eco57I CTGAAG 2 cut(s) 542, 1071
EcoNI CCTNNNNNAGG 1 cut(s) 1071
EcoRI GAATTC 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 1176
EcoT14I CCWWGG 1 cut(s) 593
EcoT22I ATGCAT 3 cut(s) 301, 523, 1377
ErhI CCWWGG 1 cut(s) 593
Esp3I CGTCTC 1 cut(s) 883
FaeI CATG 6 cut(s) 303, 658, 823, 1012, 1170, 1379
FalI AAGNNNNNCTT 2 cut(s) 466, 498
FaqI GGGAC 2 cut(s) 737, 1116
FatI CATG 6 cut(s) 299, 654, 819, 1008, 1166, 1375
FbaI TGATCA 1 cut(s) 502
Fnu4HI GCNGC 2 cut(s) 61, 1191
FokI GGATG 4 cut(s) 308, 418, 443, 1137
Fsp4HI GCNGC 2 cut(s) 61, 1191
FspBI CTAG 3 cut(s) 594, 918, 1149
GlaI GCGC 2 cut(s) 1230, 1337
GluI GCNGC 2 cut(s) 61, 1191
GsuI CTGGAG 2 cut(s) 732, 1245
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 2 cut(s) 1231, 1338
Hin1II CATG 6 cut(s) 303, 658, 823, 1012, 1170, 1379
Hin6I GCGC 2 cut(s) 1229, 1336
HinP1I GCGC 2 cut(s) 1229, 1336
HindIII AAGCTT 1 cut(s) 213
HinfI GANTC 9 cut(s) 48, 197, 311, 598, 929, 1084, 1136, 1246, 1340
HphI GGTGA 3 cut(s) 253, 568, 1247
Hpy188I TCNGA 4 cut(s) 848, 1209, 1350, 1367
Hpy188III TCNNGA 7 cut(s) 99, 392, 711, 785, 811, 1004, 1133
Hpy99I CGWCG 2 cut(s) 48, 60
HpyAV CCTTC 5 cut(s) 39, 943, 1271, 1295, 1399
HpyCH4III ACNGT 1 cut(s) 1216
HpyCH4V TGCA 9 cut(s) 24, 299, 425, 521, 621, 694, 766, 1073, 1375
HpyF10VI GCNNNNNNNGC 2 cut(s) 1187, 1237
HpyF3I CTNAG 3 cut(s) 176, 344, 717
Hsp92II CATG 6 cut(s) 303, 658, 823, 1012, 1170, 1379
HspAI GCGC 2 cut(s) 1229, 1336
KpnI GGTACC 1 cut(s) 873
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 2 cut(s) 104, 502
LmnI GCTCC 3 cut(s) 713, 1076, 1226
Lsp1109I GCAGC 2 cut(s) 47, 1202
LweI GCATC 7 cut(s) 286, 396, 508, 628, 677, 1022, 1362
MaeI CTAG 3 cut(s) 594, 918, 1149
MaeIII GTNAC 3 cut(s) 115, 583, 675
MalI GATC 2 cut(s) 106, 504
MboI GATC 2 cut(s) 104, 502
MboII GAAGA 9 cut(s) 32, 88, 102, 255, 306, 383, 552, 1064, 1391
MfeI CAATTG 1 cut(s) 1182
MhlI GDGCHC 1 cut(s) 977
MluCI AATT 8 cut(s) 67, 161, 491, 662, 728, 796, 877, 1182
MlyI GAGTC 1 cut(s) 1130
MmeI TCCRAC 3 cut(s) 288, 383, 871
MnlI CCTC 6 cut(s) 45, 48, 202, 1054, 1088, 1247
Mph1103I ATGCAT 3 cut(s) 301, 523, 1377
MroXI GAANNNNTTC 1 cut(s) 743
MseI TTAA 2 cut(s) 1203, 1269
MslI CAYNNNNRTG 2 cut(s) 483, 1380
MspR9I CCNGG 1 cut(s) 1178
MunI CAATTG 1 cut(s) 1182
Mva1269I GAATGC 1 cut(s) 768
MvaI CCWGG 1 cut(s) 1178
MvnI CGCG 1 cut(s) 1338
MwoI GCNNNNNNNGC 2 cut(s) 1187, 1237
NdeII GATC 2 cut(s) 104, 502
NlaIII CATG 6 cut(s) 303, 658, 823, 1012, 1170, 1379
NlaIV GGNNCC 3 cut(s) 871, 1065, 1387
NsiI ATGCAT 3 cut(s) 301, 523, 1377
NspI RCATGY 2 cut(s) 303, 1170
PaeI GCATGC 1 cut(s) 1170
PcsI WCGNNNNNNNCGW 1 cut(s) 52
PctI GAATGC 1 cut(s) 768
PdmI GAANNNNTTC 1 cut(s) 743
PfeI GAWTC 8 cut(s) 48, 197, 311, 598, 929, 1084, 1246, 1340
PflMI CCANNNNNTGG 1 cut(s) 587
PkrI GCNGC 2 cut(s) 62, 1192
PleI GAGTC 1 cut(s) 1130
PpsI GAGTC 1 cut(s) 1130
PsiI TTATAA 1 cut(s) 792
Psp6I CCWGG 1 cut(s) 1176
PspGI CCWGG 1 cut(s) 1176
PspN4I GGNNCC 3 cut(s) 871, 1065, 1387
PspPI GGNCC 2 cut(s) 590, 1385
PstNI CAGNNNCTG 1 cut(s) 587
RsaI GTAC 3 cut(s) 12, 770, 871
RsaNI GTAC 3 cut(s) 11, 769, 870
RseI CAYNNNNRTG 2 cut(s) 483, 1380
SaqAI TTAA 2 cut(s) 1203, 1269
SatI GCNGC 2 cut(s) 61, 1191
Sau3AI GATC 2 cut(s) 104, 502
Sau96I GGNCC 2 cut(s) 590, 1385
SchI GAGTC 1 cut(s) 1130
ScrFI CCNGG 1 cut(s) 1178
SduI GDGCHC 1 cut(s) 977
SfaNI GCATC 7 cut(s) 286, 396, 508, 628, 677, 1022, 1362
SfcI CTRYAG 1 cut(s) 946
SinI GGWCC 2 cut(s) 590, 1385
SmiMI CAYNNNNRTG 2 cut(s) 483, 1380
SphI GCATGC 1 cut(s) 1170
Sse9I AATT 8 cut(s) 67, 161, 491, 662, 728, 796, 877, 1182
SsiI CCGC 3 cut(s) 63, 149, 537
SspI AATATT 1 cut(s) 270
SspMI CTAG 3 cut(s) 594, 918, 1149
StyD4I CCNGG 1 cut(s) 1176
StyI CCWWGG 1 cut(s) 593
TaaI ACNGT 1 cut(s) 1216
TaqI TCGA 4 cut(s) 46, 165, 1016, 1296
TasI AATT 8 cut(s) 67, 161, 491, 662, 728, 796, 877, 1182
TatI WGTACW 1 cut(s) 10
TfiI GAWTC 8 cut(s) 48, 197, 311, 598, 929, 1084, 1246, 1340
Tru1I TTAA 2 cut(s) 1203, 1269
Tru9I TTAA 2 cut(s) 1203, 1269
TscAI CASTG 3 cut(s) 566, 779, 929
TseI GCWGC 2 cut(s) 60, 1190
TspDTI ATGAA 5 cut(s) 447, 675, 836, 1314, 1392
TspGWI ACGGA 3 cut(s) 596, 674, 696
TspRI CASTG 3 cut(s) 566, 779, 929
Van91I CCANNNNNTGG 1 cut(s) 587
VpaK11BI GGWCC 2 cut(s) 590, 1385
XagI CCTNNNNNAGG 1 cut(s) 1071
XapI RAATTY 5 cut(s) 67, 161, 491, 796, 877
XceI RCATGY 2 cut(s) 303, 1170
XcmI CCANNNNNNNNNTGG 2 cut(s) 288, 661
XmaJI CCTAGG 1 cut(s) 593
XmnI GAANNNNTTC 1 cut(s) 743
XspI CTAG 3 cut(s) 594, 918, 1149
Zsp2I ATGCAT 3 cut(s) 301, 523, 1377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.